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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057650 ID=TCONS_00057650|Name=TCONS_00057650|organism=Clytia hemisphaerica|type=transcript|length=870bp
ATTCGATAAAGACATTGTTAAAGTTAAATGAATTTGCTCTTCAAGAAATC
TTAAGAATCATGAATACTTCGAATCGAATCGAGTATTTGGTTAATTATTC
ATGGAGTTGAAAAGACTAAAATAGTTAAAATGAAGgagATTACAGTATTC
ACACAATCAAGGCAGATGGGGACTGTGGTTTCACGTACAGTAGTGTCAAT
CACTGTTGTCACTTCATCATTCTTAATTCCAAAACCTGAGCCTTACAAAC
CAGAAACAGCAGGTGAGCTGAAGGCTTACGATCCACCCAGATATAAACTC
ATCAAAGGTCCAGACAATTCTATGGCTACAAATGTAATCCCACCAAATTA
TCAAGAAGGCTGGCAACAATCTCTAGTCAATAGAGACCTCCCAGAAGTAA
CTGAAATACAAATATTAGAAGAAATCGATTAATCAAGCCAAACTGAATGA
GTATCACATTGGATCTAAAACTTCAAGCTAGCGCTTTTGGACCAAATGCT
TTCGAAGTTTCCAGAAAGTTAAGTTTAAATCAGCCATTCCATAAAGTAAT
AAGAAAagacaaaaagttttattttattttcagcaaaagcttttcggtaA
AACCATCTTCAGTGCTAGATGTTTAGAAAGAAGGTATTCAGATTCGGAAA
GTATTCGATTCGGAAATGGCTTTTATAACATCTTTTATATAATTATACAT
AAGGACACAcaacaatataaaaaaaataaaaataaaatacaaacaggAAG
AGATAGAGAGAAGAATTGTACAGATCTTATAAATTTTATACCATCTGAGA
ATTTTGTATACGAAATCTTTATGAAAAGAAGTATTATGTAAAATTTGtag
cttttgtaaaaaattatttc Run BLAST on NCBI protein sequence of TCONS_00057650-protein >TCONS_00057650-protein ID=TCONS_00057650-protein|Name=TCONS_00057650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MKEITVFTQSRQMGTVVSRTVVSITVVTSSFLIPKPEPYKPETAGELKAY
DPPRYKLIKGPDNSMATNVIPPNYQEGWQQSLVNRDLPEVTEIQILEEID Run BLAST on NCBI transcript from alignment at scaffold_297:80826..82516+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057650 ID=TCONS_00057650|Name=TCONS_00057650|organism=Clytia hemisphaerica|type=transcript|length=1691bp|location=Sequence derived from alignment at scaffold_297:80826..82516+ (Clytia hemisphaerica)
ATTCGATAAAGACATTGTTAAAGTTAAATGAATTTGCTCTTCAAGAAATC
TTAAGAATCATGAATACTTCGAATCGAATCGAGTATTTGGTTAATTATTC
ATGGAGTTGAAAAGACTAAAATAGTTAAAATGAAGGTCTAAGTGAAGATG
TAAACTTTGTTTTTCCCCatgtaaatcaaaattaaattattcaTGTAATA
TATTGTGGTATTTAATTctattaaattttcaaataaacaaaacagCTAAC
AAGCCAAACTAAACATTTTAAAGTTACTGGGAGATCACTTCAGGAAAGAA
atgataaatttgggttatttaGTATGTAAAGGACACAATTATATTATGAA
GGCTTAAAAAGACTATGAGCAACCTAATCAGGCTTTAAAATGGAACACTA
GGGTGACACTAAGATTTTACATGAATTTTCCTCAGCAAAAAAGttatctc
aaaatttttcaaatgaatCCCTGTGAACCTTTACCAAACCTTGtgtcaaa
tgaaaaataaaaggaGATAGTGTTCATCTTTACCAATTCCAAATTACGTC
ATATTTCTAAAGCCTTATGAATGGGCGCTTGACAAAAAAAGACATTTGCC
ATTGTTGAACTTTGGTCATCCCTAAGCCAATTTTCTCATGGTATCAGGAT
TGTTATAACAAGTGTGTAATATTACTTtcgtactttttattttttaggag
ATTACAGTATTCACACAATCAAGGCAGATGGGGACTGTGGTTTCACGTAC
AGTAGTGTCAATCACTGTTGTCACTTCATCATTCTTAATTCCAAAACCTG
AGCCTTACAAACCAGAAACAGCAGGTACCTCTTCAAATTGTATTTCCTAA
TAAATTTTTTCTAACCCTTATATAAATTGGGtctatgaaaaaaatgaatg
tgaaaaatggatttttagttaaaaagttgatttttttcaaatagtaCATT
TTCCTCGACAGCTCCTTTGACTTTAACAGCTAAAAAACAATCCCACCTTT
CTGTAGATCAGAagagatttaaaaaataatttgatgattTAATGTGAAGT
ATGAAGAAgttcttttgtattttcataATATAGGTGAGCTGAAGGCTTAC
GATCCACCCAGATATAAACTCATCAAAGGTCCAGACAATTCTATGGCTAC
AAATGTAATCCCACCAAATTATCAAGAAGGCTGGCAACAATCTCTAGTCA
ATAGAGACCTCCCAGAAGTAACTGAAATACAAATATTAGAAGAAATCGAT
TAATCAAGCCAAACTGAATGAGTATCACATTGGATCTAAAACTTCAAGCT
AGCGCTTTTGGACCAAATGCTTTCGAAGTTTCCAGAAAGTTAAGTTTAAA
TCAGCCATTCCATAAAGTAATAAGAAAagacaaaaagttttattttattt
tcagcaaaagcttttcggtaAAACCATCTTCAGTGCTAGATGTTTAGAAA
GAAGGTATTCAGATTCGGAAAGTATTCGATTCGGAAATGGCTTTTATAAC
ATCTTTTATATAATTATACATAAGGACACAcaacaatataaaaaaaataa
aaataaaatacaaacaggAAGAGATAGAGAGAAGAATTGTACAGATCTTA
TAAATTTTATACCATCTGAGAATTTTGTATACGAAATCTTTATGAAAAGA
AGTATTATGTAAAATTTGtagcttttgtaaaaaattatttc Coding sequence (CDS) from alignment at scaffold_297:80826..82516+ >TCONS_00057650 ID=TCONS_00057650|Name=TCONS_00057650|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_297:80826..82516+ (Clytia hemisphaerica)
ATGAAGgagATTACAGTATTCACACAATCAAGGCAGATGGGGACTGTGGT
TTCACGTACAGTAGTGTCAATCACTGTTGTCACTTCATCATTCTTAATTC
CAAAACCTGAGCCTTACAAACCAGAAACAGCAGGTGAGCTGAAGGCTTAC
GATCCACCCAGATATAAACTCATCAAAGGTCCAGACAATTCTATGGCTAC
AAATGTAATCCCACCAAATTATCAAGAAGGCTGGCAACAATCTCTAGTCA
ATAGAGACCTCCCAGAAGTAACTGAAATACAAATATTAGAAGAAATCGAT
TAAATGAAGgagATTACAGTATTCACACAATCAAGGCAGATGGGGACTGT
GGTTTCACGTACAGTAGTGTCAATCACTGTTGTCACTTCATCATTCTTAA
TTCCAAAACCTGAGCCTTACAAACCAGAAACAGCAGGTGAGCTGAAGGCT
TACGATCCACCCAGATATAAACTCATCAAAGGTCCAGACAATTCTATGGC
TACAAATGTAATCCCACCAAATTATCAAGAAGGCTGGCAACAATCTCTAG
TCAATAGAGACCTCCCAGAAGTAACTGAAATACAAATATTAGAAGAAATC
GATTAAATGAAGgagATTACAGTATTCACACAATCAAGGCAGATGGGGAC
TGTGGTTTCACGTACAGTAGTGTCAATCACTGTTGTCACTTCATCATTCT
TAATTCCAAAACCTGAGCCTTACAAACCAGAAACAGCAGGTGAGCTGAAG
GCTTACGATCCACCCAGATATAAACTCATCAAAGGTCCAGACAATTCTAT
GGCTACAAATGTAATCCCACCAAATTATCAAGAAGGCTGGCAACAATCTC
TAGTCAATAGAGACCTCCCAGAAGTAACTGAAATACAAATATTAGAAGAA
ATCGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057650-exon-scaffold_297-1491911889:80826..80960 | TCONS_00057650-exon-scaffold_297-1491911889:80826..80960 | Clytia hemisphaerica | exon |
| TCONS_00057650-exon-scaffold_297-1510915933:80826..80960 | TCONS_00057650-exon-scaffold_297-1510915933:80826..80960 | Clytia hemisphaerica | exon |
| TCONS_00057650-exon-scaffold_297-1575043694:80826..80960 | TCONS_00057650-exon-scaffold_297-1575043694:80826..80960 | Clytia hemisphaerica | exon |
| TCONS_00057650-exon-scaffold_297-1491911889:81523..81649 | TCONS_00057650-exon-scaffold_297-1491911889:81523..81649 | Clytia hemisphaerica | exon |
| TCONS_00057650-exon-scaffold_297-1510915933:81523..81649 | TCONS_00057650-exon-scaffold_297-1510915933:81523..81649 | Clytia hemisphaerica | exon |
| TCONS_00057650-exon-scaffold_297-1575043694:81523..81649 | TCONS_00057650-exon-scaffold_297-1575043694:81523..81649 | Clytia hemisphaerica | exon |
| TCONS_00057650-exon-scaffold_297-1491911889:81909..82516 | TCONS_00057650-exon-scaffold_297-1491911889:81909..82516 | Clytia hemisphaerica | exon |
| TCONS_00057650-exon-scaffold_297-1510915933:81909..82516 | TCONS_00057650-exon-scaffold_297-1510915933:81909..82516 | Clytia hemisphaerica | exon |
| TCONS_00057650-exon-scaffold_297-1575043694:81909..82516 | TCONS_00057650-exon-scaffold_297-1575043694:81909..82516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_297 | supercontig | scaffold_297:80826..82516 + |
Blast
The following BLAST results are available for this feature:
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