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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057647 ID=TCONS_00057647|Name=TCONS_00057647|organism=Clytia hemisphaerica|type=transcript|length=3103bp
TTTCCTGACACCACATGAAGTTAACGATGCTGTCGTCGCCCACATTTCTG
CAATTCGAGAGTCCTGGTGATTTTTCAACGAAAGTTTGTCTCTGTCCATT
TTCCAATTGAAACCCAGATGTTTGAGTTGACACTGCTGTTCAATTTGTTT
TTCATTGAGGGTAATACATGGATTGCATAAAGGTGATTGCCCGGATATCA
GAAATTGTGTTTTAGAAGGGTTGAATTTGAGACCGTTTTCAATTCCAAAA
AGTGTACATTCGTTAATCATTTGCTGTAGGTGTTTCAAATTTGGACTCAA
GAGGATGATATCGTCAGCGAATACTATAATCGATGTGTTAATTTGACCTG
GTAGATATGTCCCGATATTGAGTCTCTGAATATTATCAATGATGTCTTCT
GTGTAAAAGTTATACAAGTATGGGGATAATATTGAGCCTTGACGTACACC
CTGGGCAAGACGAAAGGGTGATGTAATGAAGTTTCTGTATTTTGTAGCTG
CCTCACCATTTATgtataattttatcaaaaatcttaGCACAACATCTGGt
agctttctttgatttttcaatttctcgaAAAGGACATACCAGTTACAACT
ATCGAACGCCTTTTCAGCATCCAGGCTGCAGATGTAAACCGGTGAGCCTT
TAGAGTTGTAAAATGAGATGGTGTCACGTATCAAAAGTTCAGCATGTATA
GTGGAGGCGTCTGAAGTGAATCCAAATTGGGTGTCTTTATGTTCTTTCAG
TTGAGGGCATTTAAGAATGATCAGTTTTTCTATGAGTTTGGTTAGGATTG
GAATTAGGCTCACTCCACGGTAGTTGTTTGGGTCGTTGATAGGTTTGCGG
TGTGATTTCAAAATTGGGACAATGTGGGAAGTTGAGAGGATTGTTGGTAG
TCTGGGCGCGTTTAGGATTCTGTTGACAAGGTTAGCTATGTATGATAAAA
CCTTTTCGTTGGTACAGTGAATGAAATGTTCTGCCTTGATCTCGTAGGGG
TCAAAGGTTTTGTTCTTGTTAAGACTGTTGATAGCGGAAAGTATATCGGA
ATCTGTGATGTGAAAGTCATTTTCTCTGTGTTCTTCTAGTTCTCCTAACA
TTTTATCAAGATGCTGATTGGAAGTATTGTTGTCAATGTTGTCTGTTCTG
GGAGTGTTgagaagattttcaaagtgtgaGTTGAAGCCTTTTGTAATATC
AGGAATATCAGAGCTGTTGTTAATTGTGTATAGTTTGGACTCTTCTGATT
TGGCCGATCGTATTTGATTCCAGTAGGAACGTGGtttgatctttttaatt
ttatctaTATTAACGTAATGCTCTGCAGTAGAttgatttttggacttttt
ggcTAGGTTTCGAAATTCTTTTCTGGCAAGTAGGTATCTGTTATAATGGA
CGTTATGAGGGTCTctggaaaaattgtcctctCTCCAGGaattgaacatt
ttttgaaggatttttcttttgttcgtTAGGTCAGCACTCCACCATCGCTT
AGTGTTAACAAAATGAAAGTCAGACTCCTTTTTCAAATCTAAATATGCTT
GGCTAGCACAGTCTTTTAATGTTTGATGTAAGGTAGAAATCTCTTCTTCG
ATAATGTCCTGGCATTTTATGGTCTCTATCTTGTTTGTGACTAATGAATT
GTAGTTgtttaagaaatttttattcTTCCACATGAAGTTTGGAATATGGT
TGGATTGTTTAGCTTTATATGTATTAGTGTTACTTGTTTCCATGGTCATT
TCGGCTGTTACCGGTAAGTGGTCACTAGTATTTAGGTAGTGCGGTGGGGT
TATTCCTGTGCCGACTATTTTGCTGAGGATATTGTGTGATGTTAGTATGT
GGTCAATGTAAGATTTATTGTCAAGAGAAACATGATGGTATGTAAAATCT
GGTCCTGTTCCATGTGTGATATCAATGGGTGTTAATTGTTGGTCAAGAAT
AAAGCTGTTTAGGTTTTCAGTCAATGCATTTTTATTTCTAGTTCGTTCTG
TTTGATGGGTTGACGGACAGGATTGAAAGTCACCTAGTATGATCGGTTCG
GTACTGTTGCTGAATTGTTTGATTATACCTCCAACACTTGCTAATTGTGA
GGCATATATATCTTTGAAATTGCTAGTTTTGGAGGTTGATTGTAGGTATA
CTCCAATTAGAAGAAGGGCATAGTTTCGTAACTGAATCTTTATTATAGTG
GTGAAGTCGTTTTTCATGATTAGTTCGGGTTTAGGTAATGATTTCCTAAT
CAAAAGAGCAGTACCCCCAAAAGGGCGACCAGATTCTCCTTGAGCTGCTG
GTTGAAAGTAGACATTGAAGTCAATATTAAACGAATTGAGAAGATGCTTT
TCAGATTCTGTAATCCAAAGCTCGGAGAGATAAATTATGTCATATGAAGT
TGTAAGTAGATTAATATAGTCAGAGTTCGTTTTAAAGCCGTGGCAGTTCA
AAGCAGTAAGTTTAGTAGTCGTTGTATCCATTGTCATTTCCATAAAGTTC
GTTGTCTAGGTATTCATATCTGTTGGGATGGGCGAAATTGGGGGTTTGTA
GGTTAAATCGATATCGGTTTCCATTCTGGTTTCGGGTTCGGTTATTGTTT
GATGGTGGGTTATGTCTGTGGTTTTGATACTGGTTGAAAGGTCGATCAGT
CATGGTTTTTCTTTATCTGAATGGTCTCACTATGGGCCCTTCAACCCATG
TGTCAGGCTTGAGAGCTTGGTCTTTCTCTCGTGACTCGATGTCAATTTTG
AACGATTGGTTGTGGCTATTTCGTTTGACTTGGGTGATATCCAACACTTT
AATTCCGATTTCACTGTTTACAATGTAACCTACGTCCTTCAACGAAAGGT
CTAGGTTGCAGCCCCCCACGAAGAGTGAAAATGGTTTGCGGTTACCGATT
ATGCTAGGGTCATTTGCGGTTCTCGTTCCAAAAACAGGATCTTTTGCTTT
GTACGATGGACACGTTATCTCCTGGAGACGGTCGAGATGGTTCAGTTGAT
GCAGTTGAAGATCGGTAATCATCATTGAAGAAGGTATGTTGTTCTCAACT
CGACTTTGATTGGTTGGTGCTCGGTTTGAAGTCTGCGTGGGCTGGGGAAG
CTG Run BLAST on NCBI protein sequence of TCONS_00057647-protein >TCONS_00057647-protein ID=TCONS_00057647-protein|Name=TCONS_00057647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=831bp
MEMTMDTTTTKLTALNCHGFKTNSDYINLLTTSYDIIYLSELWITESEKH
LLNSFNIDFNVYFQPAAQGESGRPFGGTALLIRKSLPKPELIMKNDFTTI
IKIQLRNYALLLIGVYLQSTSKTSNFKDIYASQLASVGGIIKQFSNSTEP
IILGDFQSCPSTHQTERTRNKNALTENLNSFILDQQLTPIDITHGTGPDF
TYHHVSLDNKSYIDHILTSHNILSKIVGTGITPPHYLNTSDHLPVTAEMT
METSNTNTYKAKQSNHIPNFMWKNKNFLNNYNSLVTNKIETIKCQDIIEE
EISTLHQTLKDCASQAYLDLKKESDFHFVNTKRWWSADLTNKRKILQKMF
NSWREDNFSRDPHNVHYNRYLLARKEFRNLAKKSKNQSTAEHYVNIDKIK
KIKPRSYWNQIRSAKSEESKLYTINNSSDIPDITKGFNSHFENLLNTPRT
DNIDNNTSNQHLDKMLGELEEHRENDFHITDSDILSAINSLNKNKTFDPY
EIKAEHFIHCTNEKVLSYIANLVNRILNAPRLPTILSTSHIVPILKSHRK
PINDPNNYRGVSLIPILTKLIEKLIILKCPQLKEHKDTQFGFTSDASTIH
AELLIRDTISFYNSKGSPVYICSLDAEKAFDSCNWYVLFEKLKNQRKLPD
VVLRFLIKLYINGEAATKYRNFITSPFRLAQGVRQGSILSPYLYNFYTED
IIDNIQRLNIGTYLPGQINTSIIVFADDIILLSPNLKHLQQMINECTLFG
IENGLKFNPSKTQFLISGQSPLCNPCITLNEKQIEQQCQLKHLGFNWKMD
RDKLSLKNHQDSRIAEMWATTASLTSCGVRK Run BLAST on NCBI transcript from alignment at scaffold_295:115715..118817 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057647 ID=TCONS_00057647|Name=TCONS_00057647|organism=Clytia hemisphaerica|type=transcript|length=3103bp|location=Sequence derived from alignment at scaffold_295:115715..118817 (Clytia hemisphaerica)
CAGCTTCCCCAGCCCACGCAGACTTCAAACCGAGCACCAACCAATCAAAG
TCGAGTTGAGAACAACATACCTTCTTCAATGATGATTACCGATCTTCAAC
TGCATCAACTGAACCATCTCGACCGTCTCCAGGAGATAACGTGTCCATCG
TACAAAGCAAAAGATCCTGTTTTTGGAACGAGAACCGCAAATGACCCTAG
CATAATCGGTAACCGCAAACCATTTTCACTCTTCGTGGGGGGCTGCAACC
TAGACCTTTCGTTGAAGGACGTAGGTTACATTGTAAACAGTGAAATCGGA
ATTAAAGTGTTGGATATCACCCAAGTCAAACGAAATAGCCACAACCAATC
GTTCAAAATTGACATCGAGTCACGAGAGAAAGACCAAGCTCTCAAGCCTG
ACACATGGGTTGAAGGGCCCATAGTGAGACCATTCAGATAAAGAAAAACC
ATGACTGATCGACCTTTCAACCAGTATCAAAACCACAGACATAACCCACC
ATCAAACAATAACCGAACCCGAAACCAGAATGGAAACCGATATCGATTTA
ACCTACAAACCCCCAATTTCGCCCATCCCAACAGATATGAATACCTAGAC
AACGAACTTTATGGAAATGACAATGGATACAACGACTACTAAACTTACTG
CTTTGAACTGCCACGGCTTTAAAACGAACTCTGACTATATTAATCTACTT
ACAACTTCATATGACATAATTTATCTCTCCGAGCTTTGGATTACAGAATC
TGAAAAGCATCTTCTCAATTCGTTTAATATTGACTTCAATGTCTACTTTC
AACCAGCAGCTCAAGGAGAATCTGGTCGCCCTTTTGGGGGTACTGCTCTT
TTGATTAGGAAATCATTACCTAAACCCGAACTAATCATGAAAAACGACTT
CACCACTATAATAAAGATTCAGTTACGAAACTATGCCCTTCTTCTAATTG
GAGTATACCTACAATCAACCTCCAAAACTAGCAATTTCAAAGATATATAT
GCCTCACAATTAGCAAGTGTTGGAGGTATAATCAAACAATTCAGCAACAG
TACCGAACCGATCATACTAGGTGACTTTCAATCCTGTCCGTCAACCCATC
AAACAGAACGAACTAGAAATAAAAATGCATTGACTGAAAACCTAAACAGC
TTTATTCTTGACCAACAATTAACACCCATTGATATCACACATGGAACAGG
ACCAGATTTTACATACCATCATGTTTCTCTTGACAATAAATCTTACATTG
ACCACATACTAACATCACACAATATCCTCAGCAAAATAGTCGGCACAGGA
ATAACCCCACCGCACTACCTAAATACTAGTGACCACTTACCGGTAACAGC
CGAAATGACCATGGAAACAAGTAACACTAATACATATAAAGCTAAACAAT
CCAACCATATTCCAAACTTCATGTGGAAgaataaaaatttcttaaacAAC
TACAATTCATTAGTCACAAACAAGATAGAGACCATAAAATGCCAGGACAT
TATCGAAGAAGAGATTTCTACCTTACATCAAACATTAAAAGACTGTGCTA
GCCAAGCATATTTAGATTTGAAAAAGGAGTCTGACTTTCATTTTGTTAAC
ACTAAGCGATGGTGGAGTGCTGACCTAacgaacaaaagaaaaatccttca
aaaaatgttcaattCCTGGAGagaggacaatttttccagAGACCCTCATA
ACGTCCATTATAACAGATACCTACTTGCCAGAAAAGAATTTCGAAACCTA
gccaaaaagtccaaaaatcaaTCTACTGCAGAGCATTACGTTAATAtaga
taaaattaaaaagatcaaaCCACGTTCCTACTGGAATCAAATACGATCGG
CCAAATCAGAAGAGTCCAAACTATACACAATTAACAACAGCTCTGATATT
CCTGATATTACAAAAGGCTTCAACtcacactttgaaaatcttctcAACAC
TCCCAGAACAGACAACATTGACAACAATACTTCCAATCAGCATCTTGATA
AAATGTTAGGAGAACTAGAAGAACACAGAGAAAATGACTTTCACATCACA
GATTCCGATATACTTTCCGCTATCAACAGTCTTAACAAGAACAAAACCTT
TGACCCCTACGAGATCAAGGCAGAACATTTCATTCACTGTACCAACGAAA
AGGTTTTATCATACATAGCTAACCTTGTCAACAGAATCCTAAACGCGCCC
AGACTACCAACAATCCTCTCAACTTCCCACATTGTCCCAATTTTGAAATC
ACACCGCAAACCTATCAACGACCCAAACAACTACCGTGGAGTGAGCCTAA
TTCCAATCCTAACCAAACTCATAGAAAAACTGATCATTCTTAAATGCCCT
CAACTGAAAGAACATAAAGACACCCAATTTGGATTCACTTCAGACGCCTC
CACTATACATGCTGAACTTTTGATACGTGACACCATCTCATTTTACAACT
CTAAAGGCTCACCGGTTTACATCTGCAGCCTGGATGCTGAAAAGGCGTTC
GATAGTTGTAACTGGTATGTCCTTTtcgagaaattgaaaaatcaaagaaa
gctaCCAGATGTTGTGCtaagatttttgataaaattatacATAAATGGTG
AGGCAGCTACAAAATACAGAAACTTCATTACATCACCCTTTCGTCTTGCC
CAGGGTGTACGTCAAGGCTCAATATTATCCCCATACTTGTATAACTTTTA
CACAGAAGACATCATTGATAATATTCAGAGACTCAATATCGGGACATATC
TACCAGGTCAAATTAACACATCGATTATAGTATTCGCTGACGATATCATC
CTCTTGAGTCCAAATTTGAAACACCTACAGCAAATGATTAACGAATGTAC
ACTTTTTGGAATTGAAAACGGTCTCAAATTCAACCCTTCTAAAACACAAT
TTCTGATATCCGGGCAATCACCTTTATGCAATCCATGTATTACCCTCAAT
GAAAAACAAATTGAACAGCAGTGTCAACTCAAACATCTGGGTTTCAATTG
GAAAATGGACAGAGACAAACTTTCGTTGAAAAATCACCAGGACTCTCGAA
TTGCAGAAATGTGGGCGACGACAGCATCGTTAACTTCATGTGGTGTCAGG
AAA Coding sequence (CDS) from alignment at scaffold_295:115715..118817 >TCONS_00057647 ID=TCONS_00057647|Name=TCONS_00057647|organism=Clytia hemisphaerica|type=CDS|length=2493bp|location=Sequence derived from alignment at scaffold_295:115715..118817 (Clytia hemisphaerica)
ATGGAAATGACAATGGATACAACGACTACTAAACTTACTGCTTTGAACTG
CCACGGCTTTAAAACGAACTCTGACTATATTAATCTACTTACAACTTCAT
ATGACATAATTTATCTCTCCGAGCTTTGGATTACAGAATCTGAAAAGCAT
CTTCTCAATTCGTTTAATATTGACTTCAATGTCTACTTTCAACCAGCAGC
TCAAGGAGAATCTGGTCGCCCTTTTGGGGGTACTGCTCTTTTGATTAGGA
AATCATTACCTAAACCCGAACTAATCATGAAAAACGACTTCACCACTATA
ATAAAGATTCAGTTACGAAACTATGCCCTTCTTCTAATTGGAGTATACCT
ACAATCAACCTCCAAAACTAGCAATTTCAAAGATATATATGCCTCACAAT
TAGCAAGTGTTGGAGGTATAATCAAACAATTCAGCAACAGTACCGAACCG
ATCATACTAGGTGACTTTCAATCCTGTCCGTCAACCCATCAAACAGAACG
AACTAGAAATAAAAATGCATTGACTGAAAACCTAAACAGCTTTATTCTTG
ACCAACAATTAACACCCATTGATATCACACATGGAACAGGACCAGATTTT
ACATACCATCATGTTTCTCTTGACAATAAATCTTACATTGACCACATACT
AACATCACACAATATCCTCAGCAAAATAGTCGGCACAGGAATAACCCCAC
CGCACTACCTAAATACTAGTGACCACTTACCGGTAACAGCCGAAATGACC
ATGGAAACAAGTAACACTAATACATATAAAGCTAAACAATCCAACCATAT
TCCAAACTTCATGTGGAAgaataaaaatttcttaaacAACTACAATTCAT
TAGTCACAAACAAGATAGAGACCATAAAATGCCAGGACATTATCGAAGAA
GAGATTTCTACCTTACATCAAACATTAAAAGACTGTGCTAGCCAAGCATA
TTTAGATTTGAAAAAGGAGTCTGACTTTCATTTTGTTAACACTAAGCGAT
GGTGGAGTGCTGACCTAacgaacaaaagaaaaatccttcaaaaaatgttc
aattCCTGGAGagaggacaatttttccagAGACCCTCATAACGTCCATTA
TAACAGATACCTACTTGCCAGAAAAGAATTTCGAAACCTAgccaaaaagt
ccaaaaatcaaTCTACTGCAGAGCATTACGTTAATAtagataaaattaaa
aagatcaaaCCACGTTCCTACTGGAATCAAATACGATCGGCCAAATCAGA
AGAGTCCAAACTATACACAATTAACAACAGCTCTGATATTCCTGATATTA
CAAAAGGCTTCAACtcacactttgaaaatcttctcAACACTCCCAGAACA
GACAACATTGACAACAATACTTCCAATCAGCATCTTGATAAAATGTTAGG
AGAACTAGAAGAACACAGAGAAAATGACTTTCACATCACAGATTCCGATA
TACTTTCCGCTATCAACAGTCTTAACAAGAACAAAACCTTTGACCCCTAC
GAGATCAAGGCAGAACATTTCATTCACTGTACCAACGAAAAGGTTTTATC
ATACATAGCTAACCTTGTCAACAGAATCCTAAACGCGCCCAGACTACCAA
CAATCCTCTCAACTTCCCACATTGTCCCAATTTTGAAATCACACCGCAAA
CCTATCAACGACCCAAACAACTACCGTGGAGTGAGCCTAATTCCAATCCT
AACCAAACTCATAGAAAAACTGATCATTCTTAAATGCCCTCAACTGAAAG
AACATAAAGACACCCAATTTGGATTCACTTCAGACGCCTCCACTATACAT
GCTGAACTTTTGATACGTGACACCATCTCATTTTACAACTCTAAAGGCTC
ACCGGTTTACATCTGCAGCCTGGATGCTGAAAAGGCGTTCGATAGTTGTA
ACTGGTATGTCCTTTtcgagaaattgaaaaatcaaagaaagctaCCAGAT
GTTGTGCtaagatttttgataaaattatacATAAATGGTGAGGCAGCTAC
AAAATACAGAAACTTCATTACATCACCCTTTCGTCTTGCCCAGGGTGTAC
GTCAAGGCTCAATATTATCCCCATACTTGTATAACTTTTACACAGAAGAC
ATCATTGATAATATTCAGAGACTCAATATCGGGACATATCTACCAGGTCA
AATTAACACATCGATTATAGTATTCGCTGACGATATCATCCTCTTGAGTC
CAAATTTGAAACACCTACAGCAAATGATTAACGAATGTACACTTTTTGGA
ATTGAAAACGGTCTCAAATTCAACCCTTCTAAAACACAATTTCTGATATC
CGGGCAATCACCTTTATGCAATCCATGTATTACCCTCAATGAAAAACAAA
TTGAACAGCAGTGTCAACTCAAACATCTGGGTTTCAATTGGAAAATGGAC
AGAGACAAACTTTCGTTGAAAAATCACCAGGACTCTCGAATTGCAGAAAT
GTGGGCGACGACAGCATCGTTAACTTCATGTGGTGTCAGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057647-exon-scaffold_295-1491911889:115715..118817 | TCONS_00057647-exon-scaffold_295-1491911889:115715..118817 | Clytia hemisphaerica | exon |
| TCONS_00057647-exon-scaffold_295-1510915933:115715..118817 | TCONS_00057647-exon-scaffold_295-1510915933:115715..118817 | Clytia hemisphaerica | exon |
| TCONS_00057647-exon-scaffold_295-1575043694:115715..118817 | TCONS_00057647-exon-scaffold_295-1575043694:115715..118817 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_295 | supercontig | scaffold_295:115715..118817 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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