TCONS_00057646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057646
Unique NameTCONS_00057646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057646 ID=TCONS_00057646|Name=TCONS_00057646|organism=Clytia hemisphaerica|type=transcript|length=365bp
GTAAATGCCTGAAAGCTGCTTTAAATGGAGTAGTTAGTTGAACAGGAAGT
ATTCAGCCCTCAGACAGCGATGAGATTTTAGCTACACCAAGTGTAATTTC
CAAGGCAagcaagcgggggggggggctaatgctactgtcaactgctctag
cCATCTTGTTATGTTGGTCCTGCATGTGGACGGATGAGGCCATATAAAAT
AAACACGAAAACCAACGCCCATTACACgcccctcaaaatgaaaattacac
aaatttgaataatcgaggcaacctatattcgaaaaaagatagtatttttt
aaaaagatagtattttttaaacgaagatagtatgtttacaacaaagatag
tattgttttaaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_295:102303..102667

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057646 ID=TCONS_00057646|Name=TCONS_00057646|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at scaffold_295:102303..102667 (Clytia hemisphaerica)
ctttttaaaacaatactatctttgttgtaaacatactatcttcgtttaaa
aaatactatctttttaaaaaatactatcttttttcgaatataggttgcct
cgattattcaaatttgtgtaattttcattttgaggggcGTGTAATGGGCG
TTGGTTTTCGTGTTTATTTTATATGGCCTCATCCGTCCACATGCAGGACC
AACATAACAAGATGgctagagcagttgacagtagcattagcccccccccc
cgcttgctTGCCTTGGAAATTACACTTGGTGTAGCTAAAATCTCATCGCT
GTCTGAGGGCTGAATACTTCCTGTTCAACTAACTACTCCATTTAAAGCAG
CTTTCAGGCATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036361XLOC_036361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057646-exon-scaffold_295-1491911889:102303..102667TCONS_00057646-exon-scaffold_295-1491911889:102303..102667Clytia hemisphaericaexon
TCONS_00057646-exon-scaffold_295-1510915933:102303..102667TCONS_00057646-exon-scaffold_295-1510915933:102303..102667Clytia hemisphaericaexon
TCONS_00057646-exon-scaffold_295-1575043694:102303..102667TCONS_00057646-exon-scaffold_295-1575043694:102303..102667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:102303..102667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.78657	3.20963	4.50839	4.21424	2.09884	5.84495	1.84633	2.44793	1.59423	2.23042	1.66098	3.95998	1.85249	4.08559	3.18465	1.99453	2.03646	3.23905	2.99548	2.16413	6.33276	7.82253	0.628333	1.22065	1.95623	2.76895	12.3166	4.06448	5.87058	3.84196
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top