TCONS_00057645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057645
Unique NameTCONS_00057645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057645 ID=TCONS_00057645|Name=TCONS_00057645|organism=Clytia hemisphaerica|type=transcript|length=724bp
TTCATCTTTTGTCGAAATCTTGATGTTTGATTTTCATAAGTGTAAAAGTC
ATTAGGCTGAGTTATAGAGATGTCATTATTGATACTGCTATCTAATGGTA
TTTCATTGACAATTTCGTTAATGTctttatcaactttttcatgatcTTTA
TTCAAAACAGGAACATTTTCAATAGTGTTTTTTGAGAGAGAGAAAGTTTT
GATAAGTTGAGCGTTGTTATCAAGAGcgatttttagattttcttgagAAG
TGTTAAGCTGTTGTTGCAAGAGATTAATAACAGTGTCTTTCAGTTCAAGG
GTGGAATccatttttatgactttttcatTCAGAGCACTCAAAGTTTCGGT
CACATATATTTTAAAGTCCACAAAGTCGGAGTACAtatctttctctctct
ctcgtGTAGAATTGGTATAGGAACTACAGCTTGCAGCAATGAAAACGTTA
CCTTTCCTGCTCTTGTAGATTCTTTGATGCATCCCATTGACTTGAGCTTG
TTAATGGTAGTTTTAAAATCATTCCCATCCATTTTATNTGGACTTTAGCT
TGTTAATGGTAGTTTTGAAATCATCCCCATCCATTTTAAATCTCTCCCAG
CAATCTTTTAGAAGAGTGTCAAAATCACAGCTCTTCTTTTTGTCTTTCCT
CTCCTTGATCAGAGCGAGTAATGCATCTCTGTTATCAACAGCTTTATCAT
TTACTTCAGGAGGTTCAGTTATTG
Run BLAST on NCBI

protein sequence of TCONS_00057645-protein

>TCONS_00057645-protein ID=TCONS_00057645-protein|Name=TCONS_00057645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MHQRIYKSRKGNVFIAASCSSYTNSTREREKDMYSDFVDFKIYVTETLSA
LNEKVIKMDSTLELKDTVINLLQQQLNTSQENLKIALDNNAQLIKTFSLS
KNTIENVPVLNKDHEKVDKDINEIVNEIPLDSSINNDISITQPNDFYTYE
NQTSRFRQKM
Run BLAST on NCBI

transcript from alignment at scaffold_295:99376..100099

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057645 ID=TCONS_00057645|Name=TCONS_00057645|organism=Clytia hemisphaerica|type=transcript|length=724bp|location=Sequence derived from alignment at scaffold_295:99376..100099 (Clytia hemisphaerica)
CAATAACTGAACCTCCTGAAGTAAATGATAAAGCTGTTGATAACAGAGAT
GCATTACTCGCTCTGATCAAGGAGAGGAAAGACAAAAAGAAGAGCTGTGA
TTTTGACACTCTTCTAAAAGATTGCTGGGAGAGATTTAAAATGGATGGGG
ATGATTTCAAAACTACCATTAACAAGCTAAAGTCCANATAAAATGGATGG
GAATGATTTTAAAACTACCATTAACAAGCTCAAGTCAATGGGATGCATCA
AAGAATCTACAAGAGCAGGAAAGGTAACGTTTTCATTGCTGCAAGCTGTA
GTTCCTATACCAATTCTACacgagagagagagaaagataTGTACTCCGAC
TTTGTGGACTTTAAAATATATGTGACCGAAACTTTGAGTGCTCTGAatga
aaaagtcataaaaatggATTCCACCCTTGAACTGAAAGACACTGTTATTA
ATCTCTTGCAACAACAGCTTAACACTTctcaagaaaatctaaaaatcgCT
CTTGATAACAACGCTCAACTTATCAAAACTTTCTCTCTCTCAAAAAACAC
TATTGAAAATGTTCCTGTTTTGAATAAAgatcatgaaaaagttgataaag
ACATTAACGAAATTGTCAATGAAATACCATTAGATAGCAGTATCAATAAT
GACATCTCTATAACTCAGCCTAATGACTTTTACACTTATGAAAATCAAAC
ATCAAGATTTCGACAAAAGATGAA

Coding sequence (CDS) from alignment at scaffold_295:99376..100099

>TCONS_00057645 ID=TCONS_00057645|Name=TCONS_00057645|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_295:99376..100099 (Clytia hemisphaerica)
ATGCATCAAAGAATCTACAAGAGCAGGAAAGGTAACGTTTTCATTGCTGC
AAGCTGTAGTTCCTATACCAATTCTACacgagagagagagaaagataTGT
ACTCCGACTTTGTGGACTTTAAAATATATGTGACCGAAACTTTGAGTGCT
CTGAatgaaaaagtcataaaaatggATTCCACCCTTGAACTGAAAGACAC
TGTTATTAATCTCTTGCAACAACAGCTTAACACTTctcaagaaaatctaa
aaatcgCTCTTGATAACAACGCTCAACTTATCAAAACTTTCTCTCTCTCA
AAAAACACTATTGAAAATGTTCCTGTTTTGAATAAAgatcatgaaaaagt
tgataaagACATTAACGAAATTGTCAATGAAATACCATTAGATAGCAGTA
TCAATAATGACATCTCTATAACTCAGCCTAATGACTTTTACACTTATGAA
AATCAAACATCAAGATTTCGACAAAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036360XLOC_036360Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057645-proteinTCONS_00057645-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057645-exon-scaffold_295-1491911889:99376..100099TCONS_00057645-exon-scaffold_295-1491911889:99376..100099Clytia hemisphaericaexon
TCONS_00057645-exon-scaffold_295-1510915933:99376..100099TCONS_00057645-exon-scaffold_295-1510915933:99376..100099Clytia hemisphaericaexon
TCONS_00057645-exon-scaffold_295-1575043694:99376..100099TCONS_00057645-exon-scaffold_295-1575043694:99376..100099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:99376..100099 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.826666	0.403065	0.701995	0.839413	5.20242	2.20233	2.21419	2.40456	1.27713	1.43812	0.76773	0.963471	0.641421	0.666122	0.469408	1.21739	0.362002	0.477052	0.878764	1.99239	0.532845	0.292391	0.23696	0.502672	0.295852	0.330051	0.566761	0.302432	0.152922	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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