TCONS_00057638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057638
Unique NameTCONS_00057638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057638 ID=TCONS_00057638|Name=TCONS_00057638|organism=Clytia hemisphaerica|type=transcript|length=3685bp
ttttcgatcgcTAAAAAAGATAGGTAAAAAAGAGAAtatgtaaataaaaa
ataaacaaaatataatCATGGATGTTGATGAGAAAACGCCCTTGGGTGAA
AAAGACGCCAAACCTCAGACCGCCCAAACGCCACAGACCGCCCTTCAGAA
CCGCCCACAAGGACCAATTAACAAGCAAGATGCTAACTTCTTATGTGTCG
TATGTAGTGACCGCGCCTCTGGCTACCATTATGGTGTTCCAGCCTGCGAA
GGCTGTAAGGCATTTTTCAAACGTAGTTTACAGTCTAAAGATTTGAATTA
TAAATGCCCGGCCAAAGGGAATTGTGTGATTGATAAGATGAGTCGTAAAT
GTTGTCAAGCTTGTCGATTAAAGAAATGCCAAGATGTTGGAATGTCCAGA
GAATttctTGGCAGTAAAACCAAGAAGGTGAAAGGAGAACGTGGCAAAGA
TTATAGCAAGCcttccaaacaaaagaaaacagaacAGAGTGAGCAAACTG
AGAACTTAGTGGAAAGTACAATAAGTGCGAAAGAAGTCGAGCTGGAAAAC
ATGGTTGATAAATTAAATGTTCTCCATTCTGAATACTTCCTGAAAATCAA
AGATAAATCAGAACCCGGACAGGATGTTAAAGAACAATTGTGTACAACTG
TCGGACAACAATTAATACGGATAATTGACTGGGCTAAGAAACTGCCAGGG
TATTGCCAACTAGCTATTAGTGATCAAGCCATTTTGTTACAAGCTGCTTG
GGTAGATTTGCTTGTTTTGAACTGGCTTTATTTCTCAGTGATCTCCGAAG
GTGGACTTAACATTTCGAGATCATGCCATATTACTAAGGATGACGCTAAA
GAATTGGGATTCGATAATATTCATTCACACATTGTTTTATTGATTGATCG
AGCCAAGAAATATCGAATAGACGAAGAAGAAGTTGCATGCTTGAAAGCCA
TCAGCTTAACGAATGCTGAGTCGAGCAGCCTTGAGGGTCCAGACAAAGTG
AACGATCTTATCACGCAATTCAGTTCAGCCCTCCAATACTATACAGCGAC
CCGACATCGTGAAAATCCACAGAAGTTCGCTAATCTCGTCTTGATTTTAC
CGCAACTAAAATATTTAGTGAATCAATTGATCGAATTCTTGTACACTATG
AAAATTAACTGCTCGGGTCCTGCGTTGACAGATCTGGTCATTGAAATGTT
GGAAGCAAAACAACGGTTATAGAGAAAGTGATAgtgaatgttttgttttg
agatgGATATTGGTGCTGAGGCTTTGAGAACCTTCCTCGAACGAATTCAA
AAATATAGTGAGTTTGGTCCAAAATTCGCGCTATCGGTACCTTAGAGTCG
TATTTTTACTCCAAACTGTAAGATGAAATGAGCTCGAAAAGATGAGTTAA
ATATGTTGACTCCAATAATCCGTTGCTTGAAAATCGGAAATTCTTTTCAA
ACAATATATCGCATGCTAACGGAGATATGAAGACAGAATCTTAAATGaat
aagataaaaatgaaaGCCTGCAATCATTAAATGTGATTGTCTCATCAGGG
AACATGAATGTGTGGAGGGAAACACCTTccataaatttgaaaaagtgtgA
CCTTGTTCCAAAAATGACGATAAGTTACAGAATAGAGCGTATTTGTTTTG
ATATGCTCAtaaacccagctgacacacaatgTTGTTTATATTTCAACATT
TATAACTCTAATTTAACATGGGTCGAGCGTAAGTAGCGTTCTATGCCTTC
tgagaattttttaaatctacatcgcttttcataaattatatcGGAAACAA
Cgtttacctcgttttcaaaaaattgctatggtgattgattcccagaggag
ttcaCAAGAAgtttactatatttacaataATAAAacttaatcaccttggt
aatggtttcaaaacgaggtagtcgttgcactcaaaataatttatgaaaaa
gcctAATACAATAAGTATTCATCTGATCTTGTTGGACGTTCTTCTACACA
AGAAAATAAGGCCAGAATTTTACCGCATAATACTGCAAGAAATTAGCTCA
ATCATATTACGTTGttcaaattttacaattggATGAAGATAATCCATCAA
TTAAAACGAATCTAACATTAGATTGGTTACATCCACAGATTTCTGAAGAA
ATTGNTCGTATTTTTACTCCAAACTGTAAGATGAAATGAGCTCGAAAAGA
TGAGTTAAATATGTTGACTCCAATAATCCGTTGCTTGAAAATCGGAAATT
CTTTTCAAACAATATATCGCATGCTAACGGAGATATGAAGACAGAATCTT
AAATGaataagataaaaatgaaaGCCTGCAATCATTAAATGTGATTGTCT
CATCAGGGAACATGAATGTGTGGAGGGAAACACCTTccataaatttgaaa
aagtgtgACCTTGTTCCAAAAATGACGATAAGTTACAGAATAGAGCGTAT
TTGTTTTGATATGCTCAtaaacccagctgacacacaatgTTGTTTATATT
TCAACATTTATAACTCTAATTTAACATGGGTCGAGCGTAAGTAGCGTTCT
ATGCCTTCtgagaattttttaaatctacatcgcttttcataaattatatc
GGAAACAACgtttacctcgttttcaaaaaattgctatggtgattgattcc
cagaggagttcaCAAGAAgtttactatatttacaataATAAAacttaatc
accttggtaatggtttcaaaacgaggtagtcgttgcactcaaaataattt
atgaaaaagcctAATACAATAAGTATTCATCTGATCTTGTTGGACGTTCT
TCTACACAAGAAAATAAGGCCAGAATTTTACCGCATAATACTGCAAGAAA
TTAGCTCAATCATATTACGTTGttcaaattttacaattggATGAAGATAA
TCCATCAATTAAAACGAATCTAACATTAGATTGGTTACATCCACAGATTT
CTGAAGAAATTGAAAGAATATTGCtactattgttttcgaaaacccgcgaa
gcttcttatCGGTCAAGCgttgaaattatattgtaatgttacgtgaccta
ggtaggatttcctacctaacctcggcacacttttcagccaaagcacgacc
tCTAGCCCgccgggctttataaatctttggTTACACCCCCTGTAAATTCT
TGCTCGCTATACTCTACGTAGTTTTTAGGCTATAGCTATACTGATTCCCC
TCTTTAATTTGTATATATTTATGCTCGATTTTCaacttttacattttatt
tacagtttttgaattttttttcaaatcatcgGGGAATAGTATTTGGCGTG
TAGccatgataaaaatgtaacgTTGCTCTTTGCTAAAAGACAGTTGACAG
TTGGGCGGGGCGCTTTTATATACACGTTCCTCTTTTGAGGGGCGTCCTTC
GATTTGTAGAGGGCCTTTTGGCCCTTTCGAGCACCtgcgtcttttctttt
ttttctcgcaTAGATTGGtcgaatgtttttaaaatgaatcaacaaaaaca
aaacttagcATGAAACTCATTCAAAGCTACATTTGTAAGCTTAATTTCCG
CCTAAACAGTTTTGAAATGATCTGCGCAATCTAGCCTCGTATTGACAGGT
CGATAAGTTCAGGGACTTCTGCCCGAAAGTCCTTGCTTTTCCAACTGGAA
ATTTGAAGCGCAAATAAGGATCAACTGGAATACTT
Run BLAST on NCBI

protein sequence of TCONS_00057638-protein

>TCONS_00057638-protein ID=TCONS_00057638-protein|Name=TCONS_00057638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MDVDEKTPLGEKDAKPQTAQTPQTALQNRPQGPINKQDANFLCVVCSDRA
SGYHYGVPACEGCKAFFKRSLQSKDLNYKCPAKGNCVIDKMSRKCCQACR
LKKCQDVGMSREFLGSKTKKVKGERGKDYSKPSKQKKTEQSEQTENLVES
TISAKEVELENMVDKLNVLHSEYFLKIKDKSEPGQDVKEQLCTTVGQQLI
RIIDWAKKLPGYCQLAISDQAILLQAAWVDLLVLNWLYFSVISEGGLNIS
RSCHITKDDAKELGFDNIHSHIVLLIDRAKKYRIDEEEVACLKAISLTNA
ESSSLEGPDKVNDLITQFSSALQYYTATRHRENPQKFANLVLILPQLKYL
VNQLIEFLYTMKINCSGPALTDLVIEMLEAKQRL
Run BLAST on NCBI

transcript from alignment at scaffold_295:16128..23128-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057638 ID=TCONS_00057638|Name=TCONS_00057638|organism=Clytia hemisphaerica|type=transcript|length=7001bp|location=Sequence derived from alignment at scaffold_295:16128..23128- (Clytia hemisphaerica)
TTTTCGATCGCTAAAAAAGATAGGTAAAAAAGGTAGGTAACTTTTTTTTA
ATGGCCCCAAAATGTAGTTTGCAATTTTAGCGATTTCTCGAGATCTCTTT
AAAATATGAACACAATTTTTTTACCACAATTTGGATATTTGATTGAGTGA
GAGGGTTTTGGGCATAAATTTGTTTGATAAATTTTTTACAATTCACCCCT
GGTTGTTAAAACGCAGGTTTGGGGCCCCCAAATGTTAGGTGTAGTGAAAA
TTTAATTATGAAGCCCAGTGGTAATAGGGGGAGAAACTATGAACATATAA
GAGTTGTGTGTTGTGATGAGAGAAAGAACATGAGTGAAAAAAGGAAGAAA
AGTGGTGCAGAAAATTAAAAAAAAAAAAACAGAAAAGAAGACTAGAAGAA
GAGTCAGCTCTAAGAATTATAGTTTGAATAGCAGACCTCTATAGATATAC
TTCCTATAACAAACTATTTTCGCTAGAGGATGAGCAGAAGCCTATAAGAA
TTTAGTATTAATTTTTGATTTTCACCTTCATGATGGTAAGGCTTTTCGGC
AGTCAGTGCATAATTTCAGAAAAAAATCTATTAGAATAAACATCAGATAT
ATCATCTTTTAACAAGAGAACTGCTTTATTCTTCTCATTCTCATTCTTCT
CATTCAAGTTTCGCCTCAAAATTTTCCGCTTTCGATTAGTAGTGGTAAAG
ATAAATAAGAGGGTAAAACGTACTGGGTTTGTTTTGTTATCTCTTGTTTA
TATGCGCAAATCTTCTATGGCTGTTATTTTTTGGTCTATGGTATTTCTTA
TATAGTTCTTACATTACGTCATTGTTTTTGAAATACGTGCCATTGAACAC
GCATACATGATTCTCTTTTTAATATGATAGGGGCAGTTGACATGTATAAG
TATAAGTTTAGTTTTGCCTTTTGATCTATGGTTGGCGAATCACAAAATGT
TATGTTGGGTATACACCTATTTTGCTATCTTATATCTAAATCATGTTTTG
GGCAGGAGTATATGGAATGTACGTAGGGTAAACACCTATTTTACTACACA
AACATCCGATTTCTTAGTAAAATGGGTAAAAATGGTCGAAAAATGGCGAA
AATAAGAACATATTAAGAACATTTTTAGGCTTAAAACCCAAAAAAATTTT
CTAGCGAAGAGGTGTACATTGCACGCTTGCACTTTTTTATAAGAAGCATT
TTACATGAACAATAATGAGGCTCAGAATGTCTAAAAAGTAACAGCAGCTA
AAAACAATGCTTAGATTGAAATGACTAATTTTTAAGGCACATGTTAAAAA
ACAGGATAAAAAAAGAATTTGAAGTTCATAGTTTAAAAAGATTAGAACAG
ACTAGTCTCCCCGGAACTTACAAGTCCTGATTAAAAATGCGTGTAATTTA
GAAGCCTGTACTGAAATCCTGTTTCATGGTCTTTGCTTGCTGCTTGTCCA
GTCAGTACAAATCTTAATTACCCATCAATGTAGTTTCTCAATCTACTAAT
GACTGTTTAGGTCGTTTGGGAGTGATTTCAAGCTAAATAATATAGTTGTC
CTTAGAGATTAATGGCATTAACGTCGTTTTGATGTGACGCTGACCTAACC
TGACCCGCTCAAGGTCAAATGCACATAAATTAGTGGTTTGCATTAAAATA
ATGTCTTTTTAAGGGAAGCGTTTTATGCTTAGTACTAACAACTTTAAGAC
CGATCATGTTCAAAATTGAATTCTGTACAATTTTTTTCATCCTATACTTT
CAGAGAATATGTAAATAAAAAATAAACAAAATATAATCATGGATGTTGAT
GAGAAAACGCCCTTGGGTGAAAAAGACGCCAAACCTCAGACCGCCCAAAC
GCCACAGACCGCCCTTCAGAACCGCCCACAAGGACCAATTAACAAGCAAG
ATGCTAACTTCTTATGTGTCGTATGTAGTGACCGCGCCTCTGGCTACCAT
TATGGTGTTCCAGCCTGCGAAGGCTGTAAGGCATTTTTCAAACGTAGTTT
ACAGTCTAAAGATTTGAATTATAAATGCCCGGCCAAAGGGAATTGTGTGA
TTGATAAGATGAGTCGTAAATGTTGTCAAGCTTGTCGATTAAAGAAATGC
CAAGATGTTGGAATGTCCAGAGAATGTAAGCTTGTTTTCCTTCCTTTCTT
TTAAAGTAAAATCTCTTTATGGCGTGCACCGCAAAACTGATATACGATTT
TTTGGAATTTTTTTTCGACCGTGAAAATAAGTTTTCACTAAATTAGTTGC
CTCCCCGTTTTCTCAAAGCAAAGGTAACGAAACCTTTTTATAAAAGACTT
ACAGAGATGATTGAAGATTATCATTATCTCCATCATTTCTGAATTTTATT
GATTATCTCCCTAATATTCATTGTTCAACGATTCAATCATTTTTCATTCA
GTTCTTGGCAGTAAAACCAAGAAGGTGAAAGGAGAACGTGGCAAAGATTA
TAGCAAGCCTTCCAAACAAAAGAAAACAGAACAGAGTGAGCAAACTGAGA
ACTTAGTGGAAAGTACAATAAGTGCGAAAGAAGTCGAGCTGGAAAACATG
GTTGATAAATTAAATGTTCTCCATTCTGAATACTTCCTGAAAATCAAAGA
TAAATCAGAACCCGGACAGGATGTTAAAGAACAATTGTGTACAACTGTCG
GACAACAATTAATACGGATAATTGACTGGGCTAAGAAACTGCCAGGGTAT
TGCCAACTAGCTATTAGTGATCAAGCCATTTTGTTACAAGCTGCTTGGGT
AGATTTGCTTGTTTTGAACTGGCTTTATTTCTCAGTGATCTCCGAAGGTG
GACTTAACATTTCGAGATCATGCCATATTACTAAGGATGACGCTAAAGAA
TTGGGATTCGATAATATTCATTCACACATTGTTTTATTGATTGATCGAGC
CAAGAAATATCGAATAGACGAAGAAGAAGTTGCATGCTTGAAAGCCATCA
GCTTAACGAATGCTGGTAAGTCAATTTCCAAGGCTGATTTTTCTGATTCT
TTCAGTTTGATTTTGGGATTGCCGTTTAATTTCTTGCAGGGGTAAATCCA
CTAAGAATTATACTTTCCCTAATTTTATTTTTAAACAGCCAAAAATATTA
TCTGCTGTCATCCTCAGAATTTAGTGAAAATCGTTGTGTCAAAGTGACCT
AATTAAGAAGGAGATGCTAAAGTCCAGAACGATTGTAATTGAAGTAATCC
TTGTGATAACACTTAAATTCTCTTGACACAGATTTCAATCCAAATATTAG
CGTAATAACAGAGTGATTCTACCATATCGTGCTTAAAAAACGAATATATT
TTCTCCACCTGGGTCAAACCAAGGTCATGAGTTCAATTTTTAATATTGTG
AAAGTTGAAGGGCTGCCATCGAAAATATTAAAATAAATAAAAAACTTCCT
GAGAGCCAGACGTTTTGTCCTGACTCAGCTCGATGTGAAAGTTTTGTGGT
TCTTTCATCCTGTTTTTGATACACTCACTTATCTTAAGTGCTTTTTTCGC
GTTTTTCGAATTCTAGAGTCACGAAATGACATTGTTAACCGGAAAGTTTC
ACTTTTTTGTCAAAGGAATAATGATGCAAGTTCTCATCACAAATGCTTTG
CAAGGAATATTGTCAAGCCTTGTTTTTGATAAGGAGTATGACGCAAAGAG
AAACTAAAAAAAAGTCCATTCAAGAGCGCTAAAATCTATGATTCCTAAAG
TTTTTTTTTGAGAGAGAGACAGTCCTTCCGATGAACGGAGCAGACCCTAT
CCAGGACAGCATTCACTATCCTAGAATAGGGAGATCACTGTGTTTACCTG
ACTCTGCCAACTCGTGCTTATGACACATCGAGTAGCTGGTGTATAGTTAC
TATACTCGAACGACTCGTGGTCAAACCTGACAAGTATTAGCAACCACACC
ACAGGGTCAGGCAAAGTTTTTTGAAAATGGAGAAAAAGAAAAAGAACTCT
TTTTGTTCATAGGCGCAACGATGGCCTTTGGACTGGAGATGGCTCGTTGA
AATATTTTGAAACAGTTTCTGCTCCCTATCAACTGAACATTCTTAAGACT
TGAAATCTAGTTAAAACCTTTCTTAATTCTTGTCTGAACCCTAAACAGAG
AAAGAACATGGTCAGGAATGGAATCTAAAATTTCTTTTTTTTTCATCTTT
GATTTTAGAGTCGAGCAGCCTTGAGGGTCCAGACAAAGTGAACGACCTTA
TCACGCAATTCAGCNCCTAAACAGAGAAAGAACATGGTCAGGAATGGAAT
CTAAAATTTCTCTTTTTTTCATCTTTGATTTTAGAGTCGAGCAGCCTTGA
GGGTCCAGACAAAGTGAACGATCTTATCACGCAATTCAGTTCAGCCCTCC
AATACTATACAGCGACCCGACATCGTGAAAATCCACAGAAGTTCGCTAAT
CTCGTCTTGATTTTACCGCAACTAAAATATTTAGTGAATCAATTGATCGA
ATTCTTGTACACTATGAAAATTAACTGCTCGGGTCCTGCGTTGACAGATC
TGGTCATTGAAATGTTGGAAGCAAAACAACGGTTATAGAGAAAGTGATAG
TGAATGTTTTGTTTTGAGATGGATATTGGTGCTGAGGCTTTGAGAACCTT
CCTCGAACGAATTCAAAAATATAGTGAGTTTGGTCCAAAATTCGCGCTAT
CGGTACCTTAGAGTCGTATTTTTACTCCAAACTGTAAGATGAAATGAGCT
CGAAAAGATGAGTTAAATATGTTGACTCCAATAATCCGTTGCTTGAAAAT
CGGAAATTCTTTTCAAACAATATATCGCATGCTAACGGAGATATGAAGAC
AGAATCTTAAATGAATAAGATAAAAATGAAAGCCTGCAATCATTAAATGT
GATTGTCTCATCAGGGAACATGAATGTGTGGAGGGAAACACCTTCCATAA
ATTTGAAAAAGTGTGACCTTGTTCCAAAAATGACGATAAGTTACAGAATA
GAGCGTATTTGTTTTGATATGCTCATAAACCCAGCTGACACACAATGTTG
TTTATATTTCAACATTTATAACTCTAATTTAACATGGGTCGAGCGTAAGT
AGCGTTCTATGCCTTCTGAGAATTTTTTAAATCTACATCGCTTTTCATAA
ATTATATCGGAAACAACGTTTACCTCGTTTTCAAAAAATTGCTATGGTGA
TTGATTCCCAGAGGAGTTCACAAGAAGTTTACTATATTTACAATAATAAA
ACTTAATCACCTTGGTAATGGTTTCAAAACGAGGTAGTCGTTGCACTCAA
AATAATTTATGAAAAAGCCTAATACAATAAGTATTCATCTGATCTTGTTG
GACGTTCTTCTACACAAGAAAATAAGGCCAGAATTTTACCGCATAATACT
GCAAGAAATTAGCTCAATCATATTACGTTGTTCAAATTTTACAATTGGAT
GAAGATAATCCATCAATTAAAACGAATCTAACATTAGATTGGTTACATCC
ACAGATTTCTGAAGAAATTGNTCGTATTTTTACTCCAAACTGTAAGATGA
AATGAGCTCGAAAAGATGAGTTAAATATGTTGACTCCAATAATCCGTTGC
TTGAAAATCGGAAATTCTTTTCAAACAATATATCGCATGCTAACGGAGAT
ATGAAGACAGAATCTTAAATGAATAAGATAAAAATGAAAGCCTGCAATCA
TTAAATGTGATTGTCTCATCAGGGAACATGAATGTGTGGAGGGAAACACC
TTCCATAAATTTGAAAAAGTGTGACCTTGTTCCAAAAATGACGATAAGTT
ACAGAATAGAGCGTATTTGTTTTGATATGCTCATAAACCCAGCTGACACA
CAATGTTGTTTATATTTCAACATTTATAACTCTAATTTAACATGGGTCGA
GCGTAAGTAGCGTTCTATGCCTTCTGAGAATTTTTTAAATCTACATCGCT
TTTCATAAATTATATCGGAAACAACGTTTACCTCGTTTTCAAAAAATTGC
TATGGTGATTGATTCCCAGAGGAGTTCACAAGAAGTTTACTATATTTACA
ATAATAAAACTTAATCACCTTGGTAATGGTTTCAAAACGAGGTAGTCGTT
GCACTCAAAATAATTTATGAAAAAGCCTAATACAATAAGTATTCATCTGA
TCTTGTTGGACGTTCTTCTACACAAGAAAATAAGGCCAGAATTTTACCGC
ATAATACTGCAAGAAATTAGCTCAATCATATTACGTTGTTCAAATTTTAC
AATTGGATGAAGATAATCCATCAATTAAAACGAATCTAACATTAGATTGG
TTACATCCACAGATTTCTGAAGAAATTGAAAGAATATTGCTACTATTGTT
TTCGAAAACCCGCGAAGCTTCTTATCGGTCAAGCGTTGAAATTATATTGT
AATGTTACGTGACCTAGGTAGGATTTCCTACCTAACCTCGGCACACTTTT
CAGCCAAAGCACGACCTCTAGCCCGCCGGGCTTTATAAATCTTTGGTTAC
ACCCCCTGTAAATTCTTGCTCGCTATACTCTACGTAGTTTTTAGGCTATA
GCTATACTGATTCCCCTCTTTAATTTGTATATATTTATGCTCGATTTTCA
ACTTTTACATTTTATTTACAGTTTTTGAATTTTTTTTCAAATCATCGGGG
AATAGTATTTGGCGTGTAGCCATGATAAAAATGTAACGTTGCTCTTTGCT
AAAAGACAGTTGACAGTTGGGCGGGGCGCTTTTATATACACGTTCCTCTT
TTGAGGGGCGTCCTTCGATTTGTAGAGGGCCTTTTGGCCCTTTCGAGCAC
CTGCGTCTTTTCTTTTTTTTCTCGCATAGATTGGTCGAATGTTTTTAAAA
TGAATCAACAAAAACAAAACTTAGCATGAAACTCATTCAAAGCTACATTT
GTAAGCTTAATTTCCGCCTAAACAGTTTTGAAATGATCTGCGCAATCTAG
CCTCGTATTGACAGGTCGATAAGTTCAGGGACTTCTGCCCGAAAGTCCTT
GCTTTTCCAACTGGAAATTTGAAGCGCAAATAAGGATCAACTGGAATACT
T

Coding sequence (CDS) from alignment at scaffold_295:16128..23128-

>TCONS_00057638 ID=TCONS_00057638|Name=TCONS_00057638|organism=Clytia hemisphaerica|type=CDS|length=3465bp|location=Sequence derived from alignment at scaffold_295:16128..23128- (Clytia hemisphaerica)
AGTCGAGCAGCCTTGAGGGTCCAGACAAAGTGAACGATCTTATCACGCAA
TTCAGTTCAGCCCTCCAATACTATACAGCGACCCGACATCGTGAAAATCC
ACAGAAGTTCGCTAATCTCGTCTTGATTTTACCGCAACTAAAATATTTAG
TGAATCAATTGATCGAATTCTTGTACACTATGAAAATTAACTGCTCGGGT
CCTGCGTTGACAGATCTGGTCATTGAAATGTTGGAAGCAAAACAACGGTT
ATAGTTCTTGGCAGTAAAACCAAGAAGGTGAAAGGAGAACGTGGCAAAGA
TTATAGCAAGCCTTCCAAACAAAAGAAAACAGAACAGAGTGAGCAAACTG
AGAACTTAGTGGAAAGTACAATAAGTGCGAAAGAAGTCGAGCTGGAAAAC
ATGGTTGATAAATTAAATGTTCTCCATTCTGAATACTTCCTGAAAATCAA
AGATAAATCAGAACCCGGACAGGATGTTAAAGAACAATTGTGTACAACTG
TCGGACAACAATTAATACGGATAATTGACTGGGCTAAGAAACTGCCAGGG
TATTGCCAACTAGCTATTAGTGATCAAGCCATTTTGTTACAAGCTGCTTG
GGTAGATTTGCTTGTTTTGAACTGGCTTTATTTCTCAGTGATCTCCGAAG
GTGGACTTAACATTTCGAGATCATGCCATATTACTAAGGATGACGCTAAA
GAATTGGGATTCGATAATATTCATTCACACATTGTTTTATTGATTGATCG
AGCCAAGAAATATCGAATAGACGAAGAAGAAGTTGCATGCTTGAAAGCCA
TCAGCTTAACGAATGCTGATGGATGTTGATGAGAAAACGCCCTTGGGTGA
AAAAGACGCCAAACCTCAGACCGCCCAAACGCCACAGACCGCCCTTCAGA
ACCGCCCACAAGGACCAATTAACAAGCAAGATGCTAACTTCTTATGTGTC
GTATGTAGTGACCGCGCCTCTGGCTACCATTATGGTGTTCCAGCCTGCGA
AGGCTGTAAGGCATTTTTCAAACGTAGTTTACAGTCTAAAGATTTGAATT
ATAAATGCCCGGCCAAAGGGAATTGTGTGATTGATAAGATGAGTCGTAAA
TGTTGTCAAGCTTGTCGATTAAAGAAATGCCAAGATGTTGGAATGTCCAG
AGAATAGTCGAGCAGCCTTGAGGGTCCAGACAAAGTGAACGATCTTATCA
CGCAATTCAGTTCAGCCCTCCAATACTATACAGCGACCCGACATCGTGAA
AATCCACAGAAGTTCGCTAATCTCGTCTTGATTTTACCGCAACTAAAATA
TTTAGTGAATCAATTGATCGAATTCTTGTACACTATGAAAATTAACTGCT
CGGGTCCTGCGTTGACAGATCTGGTCATTGAAATGTTGGAAGCAAAACAA
CGGTTATAGTTCTTGGCAGTAAAACCAAGAAGGTGAAAGGAGAACGTGGC
AAAGATTATAGCAAGCCTTCCAAACAAAAGAAAACAGAACAGAGTGAGCA
AACTGAGAACTTAGTGGAAAGTACAATAAGTGCGAAAGAAGTCGAGCTGG
AAAACATGGTTGATAAATTAAATGTTCTCCATTCTGAATACTTCCTGAAA
ATCAAAGATAAATCAGAACCCGGACAGGATGTTAAAGAACAATTGTGTAC
AACTGTCGGACAACAATTAATACGGATAATTGACTGGGCTAAGAAACTGC
CAGGGTATTGCCAACTAGCTATTAGTGATCAAGCCATTTTGTTACAAGCT
GCTTGGGTAGATTTGCTTGTTTTGAACTGGCTTTATTTCTCAGTGATCTC
CGAAGGTGGACTTAACATTTCGAGATCATGCCATATTACTAAGGATGACG
CTAAAGAATTGGGATTCGATAATATTCATTCACACATTGTTTTATTGATT
GATCGAGCCAAGAAATATCGAATAGACGAAGAAGAAGTTGCATGCTTGAA
AGCCATCAGCTTAACGAATGCTGATGGATGTTGATGAGAAAACGCCCTTG
GGTGAAAAAGACGCCAAACCTCAGACCGCCCAAACGCCACAGACCGCCCT
TCAGAACCGCCCACAAGGACCAATTAACAAGCAAGATGCTAACTTCTTAT
GTGTCGTATGTAGTGACCGCGCCTCTGGCTACCATTATGGTGTTCCAGCC
TGCGAAGGCTGTAAGGCATTTTTCAAACGTAGTTTACAGTCTAAAGATTT
GAATTATAAATGCCCGGCCAAAGGGAATTGTGTGATTGATAAGATGAGTC
GTAAATGTTGTCAAGCTTGTCGATTAAAGAAATGCCAAGATGTTGGAATG
TCCAGAGAATAGTCGAGCAGCCTTGAGGGTCCAGACAAAGTGAACGATCT
TATCACGCAATTCAGTTCAGCCCTCCAATACTATACAGCGACCCGACATC
GTGAAAATCCACAGAAGTTCGCTAATCTCGTCTTGATTTTACCGCAACTA
AAATATTTAGTGAATCAATTGATCGAATTCTTGTACACTATGAAAATTAA
CTGCTCGGGTCCTGCGTTGACAGATCTGGTCATTGAAATGTTGGAAGCAA
AACAACGGTTATAGTTCTTGGCAGTAAAACCAAGAAGGTGAAAGGAGAAC
GTGGCAAAGATTATAGCAAGCCTTCCAAACAAAAGAAAACAGAACAGAGT
GAGCAAACTGAGAACTTAGTGGAAAGTACAATAAGTGCGAAAGAAGTCGA
GCTGGAAAACATGGTTGATAAATTAAATGTTCTCCATTCTGAATACTTCC
TGAAAATCAAAGATAAATCAGAACCCGGACAGGATGTTAAAGAACAATTG
TGTACAACTGTCGGACAACAATTAATACGGATAATTGACTGGGCTAAGAA
ACTGCCAGGGTATTGCCAACTAGCTATTAGTGATCAAGCCATTTTGTTAC
AAGCTGCTTGGGTAGATTTGCTTGTTTTGAACTGGCTTTATTTCTCAGTG
ATCTCCGAAGGTGGACTTAACATTTCGAGATCATGCCATATTACTAAGGA
TGACGCTAAAGAATTGGGATTCGATAATATTCATTCACACATTGTTTTAT
TGATTGATCGAGCCAAGAAATATCGAATAGACGAAGAAGAAGTTGCATGC
TTGAAAGCCATCAGCTTAACGAATGCTGATGGATGTTGATGAGAAAACGC
CCTTGGGTGAAAAAGACGCCAAACCTCAGACCGCCCAAACGCCACAGACC
GCCCTTCAGAACCGCCCACAAGGACCAATTAACAAGCAAGATGCTAACTT
CTTATGTGTCGTATGTAGTGACCGCGCCTCTGGCTACCATTATGGTGTTC
CAGCCTGCGAAGGCTGTAAGGCATTTTTCAAACGTAGTTTACAGTCTAAA
GATTTGAATTATAAATGCCCGGCCAAAGGGAATTGTGTGATTGATAAGAT
GAGTCGTAAATGTTGTCAAGCTTGTCGATTAAAGAAATGCCAAGATGTTG
GAATGTCCAGAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036354XLOC_036354Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057638-proteinTCONS_00057638-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057638-exon-scaffold_295-1575043694:23097..23128TCONS_00057638-exon-scaffold_295-1575043694:23097..23128Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1575043694:21004..21375TCONS_00057638-exon-scaffold_295-1575043694:21004..21375Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1575043694:20164..20727TCONS_00057638-exon-scaffold_295-1575043694:20164..20727Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1575043694:16128..18844TCONS_00057638-exon-scaffold_295-1575043694:16128..18844Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1510915933:23097..23128TCONS_00057638-exon-scaffold_295-1510915933:23097..23128Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1510915933:21004..21375TCONS_00057638-exon-scaffold_295-1510915933:21004..21375Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1510915933:20164..20727TCONS_00057638-exon-scaffold_295-1510915933:20164..20727Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1510915933:16128..18844TCONS_00057638-exon-scaffold_295-1510915933:16128..18844Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1491911889:23097..23128TCONS_00057638-exon-scaffold_295-1491911889:23097..23128Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1491911889:21004..21375TCONS_00057638-exon-scaffold_295-1491911889:21004..21375Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1491911889:20164..20727TCONS_00057638-exon-scaffold_295-1491911889:20164..20727Clytia hemisphaericaexon
TCONS_00057638-exon-scaffold_295-1491911889:16128..18844TCONS_00057638-exon-scaffold_295-1491911889:16128..18844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:16128..23128 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.15498	4.16702	1.84434	1.15148	20.8391	14.502	11.8849	13.1526	6.08381	5.91981	6.34922	3.55189	12.211	10.2452	11.9498	12.9992	8.49852	7.84254	18.3172	16.903	6.90725	7.08048	9.81366	8.3408	5.84846	7.49404	5.10276	4.6969	7.32417	7.49622
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00057638 vs. Swiss-Prot (Human)
Match: ERR3 (Estrogen-related receptor gamma OS=Homo sapiens GN=ESRRG PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 2.506e-60
Identity = 122/342 (35.67%), Postives = 191/342 (55.85%), Query Frame = 2 
Query:  191 LCVVCSDRASGYHYGVPACEGCKAFFKRSLQSKDLNYKCPAKGNCVIDKMSRKCCQACRLKKCQDVGMSREFLGSKTKKVKGERGKDYSKPSKQKKTEQSEQTENLVESTISAKEVELENMVDKLNVLHSEYFLKIKDKSEPGQDVK--EQLCTTVGQQLIRIIDWAKKLPGYCQLAISDQAILLQAAWVDLLVLNWLYFSVISEGGLNISRSCHITKDDAKELGFDNIHSHIVLLIDRAKKYRIDEEEVACLKAISLTNAESSSLEGPDKVNDLITQFSSALQYYTATRHRENPQKFANLVLILPQLKYLVNQLIEFLYTMKINCSGPALTDLVIEMLEAK 1210
            LC+VC D ASGYHYGV +CE CKAFFKR++Q  ++ Y CPA   C I K  RK CQACR  KC  VGM +E  G +  +V+G R        K K+   +E +  L    +   +     +V  L V   E    + D + P  D+K    LC    ++L+ II WAK +PG+  L+++DQ  LLQ+AW+++L+L  +Y S+  E  L  +    + +D +K  G  ++++ I+ L+ + K  ++++EE   LKAI+L N++S  +E  + V  L      ALQ Y A +H E+P++   +++ LP L+    + ++  Y +K+    P +  L +EMLEAK
Sbjct:  127 LCLVCGDIASGYHYGVASCEACKAFFKRTIQG-NIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKE--GVRLDRVRGGR-------QKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVP-MHKLFLEMLEAK 457
The following BLAST results are available for this feature:
BLAST of TCONS_00057638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERR32.506e-6035.67Estrogen-related receptor gamma OS=Homo sapiens GN... [more]
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