TCONS_00057637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057637
Unique NameTCONS_00057637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057637 ID=TCONS_00057637|Name=TCONS_00057637|organism=Clytia hemisphaerica|type=transcript|length=1149bp
ACTGTCTTGCATGGATTACTGAAAATAAAATTTCTTGGCCAGAACTTGGA
AACATTCAACTGAAGAAGTATTAAACATAAAGTTCATAAAAATGGGTGGA
GGGTACAAATTCTCAGACGAAGAAAAAAGACAACTTCAGAAGATTTTCAA
CGATGCTGATGATGATTCTTCCGGAagtattgataaaaaagaattcaaaa
aattatCCAAGAAGTTGAATATTTTCCCTGGTGAAAAAGAATTCGAATCC
ATGTTTAGAGAAGTTGACGCTGACGGTTCTGGTGAAATTGACTTCGACGA
ATTCATGACGTTATTGAAGAAGATTTTAGCCCCACCATCTGATGAAGAAC
TCTTAATGAAATTCAAGAAACTTGATCAAGGAAACAAAGGTTATTTGACG
TTCAAAGATTTGAAGGCTGGCTTCCAAGCAATGAATTATCAGATCAGTGA
CAGCGCCATCAAGGATATGATCGCTGTTGCTAGTGATGATGGTGATGACC
AAGTCTCCATTGAAGAATTTACAGCAGTTGCGAAACGACCAAGGAAATTA
TGAAGACGACCTATGATACAACGCTGAAGTTATATTCTTTGGTGTAGATA
AGGCTTTACATCCGGATGATATCTAGAATTGTAACTAGATTAATATTATT
TTGTCATGTGTCTTTAAATATTTCcacctttttatcaaaattatctacaa
aatgaaaatattgggTGTCAatccttgaaaataaaaaataatcattcaat
cTTAGTAGCATTAAAAACTTGGATGAATTTATAGTATATTAGGAAAACAA
GCTTTTTTCTATCTTatgttttcagttttttgaaagttttaaccTAGTAC
CTGGCCACGtcatattaaattaaaaaatatctaaaattctTCATAAAATC
TAAGCAATGCTAATTTCAATCTTCTTCATCGACATATTTCTCCAAAACAC
TTCGGATCCATTTACCAGACTTTCCATACCTGCCATGGTAACCACAGCAA
CCAACCAAACAAGCTGGTTCACATCCAAGACCAACACCTGTGGAaggaaa
agtaaaattttgaagTCAACATAAACTGATTTGGACAATTTTGGGTGGGC
TATgacttttgatctaaaaaagATAGTTGGAAAAATCtgaataaaaatc
Run BLAST on NCBI

protein sequence of TCONS_00057637-protein

>TCONS_00057637-protein ID=TCONS_00057637-protein|Name=TCONS_00057637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MGGGYKFSDEEKRQLQKIFNDADDDSSGSIDKKEFKKLSKKLNIFPGEKE
FESMFREVDADGSGEIDFDEFMTLLKKILAPPSDEELLMKFKKLDQGNKG
YLTFKDLKAGFQAMNYQISDSAIKDMIAVASDDGDDQVSIEEFTAVAKRP
RKL
Run BLAST on NCBI

transcript from alignment at scaffold_295:9633..12867-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057637 ID=TCONS_00057637|Name=TCONS_00057637|organism=Clytia hemisphaerica|type=transcript|length=3235bp|location=Sequence derived from alignment at scaffold_295:9633..12867- (Clytia hemisphaerica)
ACTGTCTTGCATGGATTACTGAAAATAAAATTTCTTGGCCAGAACTTGGA
AACATTCAACTGAAGAAGTATTAAACATAAAGTTCATAAAAATGGTAAGA
AGTCAACATAATTAGCTTTGCACTAATAGTTTCCGACGTTCTAGAGTTTG
ATATGAATATATTTACAGGCCCGGCGGAACAACCGTTAAAGTGGGGAGGC
TGAAGGCTCAAAATGAGATGAGATTTAGCTTAACAATTAGAGCTTAGAAA
GGGATGCAATCATATTCAAAACTTTAGGTACCATCTTTTAATGACTCGTT
GAGCTGCATTGAGGCTAGAGCAACTTATATTTCACTTATACGGAGATGTT
GAATCTTTCAGGAGCGCTGTCAGGTTCTTTATCACATATGAAAGCCAACC
AGAGACTGGGAACGAATTTGAAACATTTTCCAATTTTTTTTAGGGTGGAG
GGTACAAATTCTCAGACGAAGAAAAAAGACGTAAGTACTGCTACTGGTTT
TGAAATTCAAATTTTCAAGTCCGAAATATTTAAAATTCTCTTTGGCATGG
CCAATTCAATCTCTTTTAAGCACCTCTTATTCGCTAAATCTTCTATGGTG
TATATTTGCCATTCTAGAATAAAAGTGAATTTCTTTGTTCAAATCTAGGA
TTCTTTGTTTTATCTTGAAAGAAAGTTTTTCGGTCTTTTTGACGATAACA
TCTTAAATTATATATAATCCCTTATTTGTGGAAACTTCTTAGAACTTCAG
AAGATTTTCAACGATGCTGATGATGATTCTTCCGGAAGTATTGATAAAAA
AGAATTCAAAAAATTATCCAAGAAGTTGAATATTTTCCCTGGTGAAAAAG
AATTCGAATCCATGTTTAGAGAAGTTGACGCTGACGGTAAGTGGATTCGA
AAAGCTGATCAGAATATCCATTATTAAAACCCTAATAACACCCCTGGCTC
ACAGCCCCGGTGAGACTTTTTCCCACAGCGGGGATGAAATTTTCTATTGA
AAACCCAGTGGAGATAAAAATTCTATTGTCCCTAGGTCGAAAAATCCGGT
GGGATGGTTTTGGAGTGCAATTTTTTTACATTGAATTTTGAATGGGGCTG
AAATCAAAGTCAATTCCTCAATGGGGATGAAATTGTAGGGTAGAAGAAAA
CGGGGACAAGATTTTGGCCGAATTTTCAGCCGGGCTGGGGTCCCAGCGGG
TCTGTGACACAGGGGTGTCTAATAGCAGTTTGGTAAACTTTTAGCTCTAC
ATAAAACGGGGGAGGCAAAACCATCCTGTTATAAAAAAGAATATTTCTCA
ACAAATGCAGTGGGGGAAAAAGCGATACAAATAAATCGTTTTGGTCAACA
TATTTTGCTGCTCTAGAGAACGTTTAAAGTAGCAGTATAAGGAGACAAAA
ATTCTCATAGCTGCGGTGATTTTCTTGAAGTGTTGTTTGTTATAAATAGA
AATTTTCACAATTTAATCGAATTTCCCATATCTGACAATTGGATACTAGA
CTTTCTTTTTTTCTGTATTATTATAGGTTCTGGTGAAATTGACTTCGACG
AATTCATGACGTTATTGAAGAAGATTTTAGCCCCACCATCTGATGAAGAA
CTCTTAATGAAATTCAAGGTGAGGATTACGTATTTTCAAGCTCTCTGTTC
ATCAATTGTTTGGGAAAAATTAAAAGGCTCCTTATTCTGCCTTAGTACTA
ACTAGCCCCTCCTGGATTCAAAAGTTTTTACCACCAAGGATTTCTTATTC
GACCTATATTCCTACTTTAACTTTTGACTTAAACAAAGAATTACACTGAA
CCAGGTGTTAGATTCCCCGAAAGGAAGACCATTTTGTTTAACGTTTAGAA
CCTTGAAGAATATATAATAACAATGTTCGCCTTCATTCTTAATGAGTTTT
TATCTTATCGTAGCATAATTTCCACCATTGACTTTCTTTCCGATATCATT
AGAAACTTGATCAAGGAAACAAAGGTTATTTGACGTTCAAAGATTTGAAG
GCTGGCTTCCAAGCAATGAATTATCAGATCAGTGACAGCGCCATCAAGGA
TATGATCGCTGTTGCTAGTGATGATGGTGATGACCAAGTCTCCATTGAAG
GTAATCAAACACCCCTGTCTCGAAGGTCTGAAAGTAAAACCCCTGTTTCG
TTGAACTAAAGCAACACTCCTGTCTTGTTGATTTAAAGCAACACTGGTAT
CGTAGGTCTAGAGTAACACCCCTGTCTCGATTGAAGGTAATACAACACCC
CTGTCTTGTAGATCTAAAAGCAAAACAACTGTCCCGTAGGTTTGAAGTAG
AACCCCTGTCTCGTAGATCTAACAACACCCCTGTTTCAGAGATCAAGAGC
AACCTTTATAATGAAGAGTGTATAACACCCTTGCATCATTGTAGAAACCA
TCACCCCAGTATTTTCAAGAGTACCACATTCACATTCTATCTTAAAAAGA
TGACGAATCATCAATTAGATCAAGACCATACAAACTCCTGTCGCTCACGC
ATCAATAACGGGCCCTGTCAAAAAACAAATTTTTTGTCTATTTTCCATCT
TATCTGAGCTTTTGAAATTAAATTTTAAATTTCCATATTTTCTTTCTCAA
GAATTTACAGCAGTTGCGAAACGACCAAGGAAATTATGAAGACGACCTAT
GATACAACGCTGAAGTTATATTCTTTGGTGTAGATAAGGCTTTACATCCG
GATGATATCTAGAATTGTAACTAGATTAATATTATTTTGTCATGTGTCTT
TAAATATTTCCACCTTTTTATCAAAATTATCTACAAAATGAAAATATTGG
GTGTCAATCCTTGAAAATAAAAAATAATCATTCAATCTTAGTAGCATTAA
AAACTTGGATGAATTTATAGTATATTAGGAAAACAAGCTTTTTTCTATCT
TATGTTTTCAGTTTTTTGAAAGTTTTAACCTAGTACCTGGCCACGTCATA
TTAAATTAAAAAATATCTAAAATTCTTCATAAAATCTAAGCAATGCTAAT
TTCAATCTTCTTCATCGACATATTTCTCCAAAACACTTCGGATCCATTTA
CCAGACTTTCCATACCTGCCATGGTAACCACAGCAACCAACCAAACAAGC
TGGTTCACATCCAAGACCAACACCTGTGGAAGGAAAAGTAAAATTTTGAA
GTCAACATAAACTGATTTGGACAATTTTGGGTGGGCTATGACTTTTGATC
TAAAAAAGATAGTTGGAAAAATCTGAATAAAAATC

Coding sequence (CDS) from alignment at scaffold_295:9633..12867-

>TCONS_00057637 ID=TCONS_00057637|Name=TCONS_00057637|organism=Clytia hemisphaerica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_295:9633..12867- (Clytia hemisphaerica)
AATTTACAGCAGTTGCGAAACGACCAAGGAAATTATGAAAACTTGATCAA
GGAAACAAAGGTTATTTGACGTTCAAAGATTTGAAGGCTGGCTTCCAAGC
AATGAATTATCAGATCAGTGACAGCGCCATCAAGGATATGATCGCTGTTG
CTAGTGATGATGGTGATGACCAAGTCTCCATTGAAGGTTCTGGTGAAATT
GACTTCGACGAATTCATGACGTTATTGAAGAAGATTTTAGCCCCACCATC
TGATGAAGAACTCTTAATGAAATTCAAGAACTTCAGAAGATTTTCAACGA
TGCTGATGATGATTCTTCCGGAAGTATTGATAAAAAAGAATTCAAAAAAT
TATCCAAGAAGTTGAATATTTTCCCTGGTGAAAAAGAATTCGAATCCATG
TTTAGAGAAGTTGACGCTGACGGGTGGAGGGTACAAATTCTCAGACGAAG
AAAAAAGACATGAATTTACAGCAGTTGCGAAACGACCAAGGAAATTATGA
AAACTTGATCAAGGAAACAAAGGTTATTTGACGTTCAAAGATTTGAAGGC
TGGCTTCCAAGCAATGAATTATCAGATCAGTGACAGCGCCATCAAGGATA
TGATCGCTGTTGCTAGTGATGATGGTGATGACCAAGTCTCCATTGAAGGT
TCTGGTGAAATTGACTTCGACGAATTCATGACGTTATTGAAGAAGATTTT
AGCCCCACCATCTGATGAAGAACTCTTAATGAAATTCAAGAACTTCAGAA
GATTTTCAACGATGCTGATGATGATTCTTCCGGAAGTATTGATAAAAAAG
AATTCAAAAAATTATCCAAGAAGTTGAATATTTTCCCTGGTGAAAAAGAA
TTCGAATCCATGTTTAGAGAAGTTGACGCTGACGGGTGGAGGGTACAAAT
TCTCAGACGAAGAAAAAAGACATGAATTTACAGCAGTTGCGAAACGACCA
AGGAAATTATGAAAACTTGATCAAGGAAACAAAGGTTATTTGACGTTCAA
AGATTTGAAGGCTGGCTTCCAAGCAATGAATTATCAGATCAGTGACAGCG
CCATCAAGGATATGATCGCTGTTGCTAGTGATGATGGTGATGACCAAGTC
TCCATTGAAGGTTCTGGTGAAATTGACTTCGACGAATTCATGACGTTATT
GAAGAAGATTTTAGCCCCACCATCTGATGAAGAACTCTTAATGAAATTCA
AGAACTTCAGAAGATTTTCAACGATGCTGATGATGATTCTTCCGGAAGTA
TTGATAAAAAAGAATTCAAAAAATTATCCAAGAAGTTGAATATTTTCCCT
GGTGAAAAAGAATTCGAATCCATGTTTAGAGAAGTTGACGCTGACGGGTG
GAGGGTACAAATTCTCAGACGAAGAAAAAAGACATGAATTTACAGCAGTT
GCGAAACGACCAAGGAAATTATGAAAACTTGATCAAGGAAACAAAGGTTA
TTTGACGTTCAAAGATTTGAAGGCTGGCTTCCAAGCAATGAATTATCAGA
TCAGTGACAGCGCCATCAAGGATATGATCGCTGTTGCTAGTGATGATGGT
GATGACCAAGTCTCCATTGAAGGTTCTGGTGAAATTGACTTCGACGAATT
CATGACGTTATTGAAGAAGATTTTAGCCCCACCATCTGATGAAGAACTCT
TAATGAAATTCAAGAACTTCAGAAGATTTTCAACGATGCTGATGATGATT
CTTCCGGAAGTATTGATAAAAAAGAATTCAAAAAATTATCCAAGAAGTTG
AATATTTTCCCTGGTGAAAAAGAATTCGAATCCATGTTTAGAGAAGTTGA
CGCTGACGGGTGGAGGGTACAAATTCTCAGACGAAGAAAAAAGACATGAA
TTTACAGCAGTTGCGAAACGACCAAGGAAATTATGAAAACTTGATCAAGG
AAACAAAGGTTATTTGACGTTCAAAGATTTGAAGGCTGGCTTCCAAGCAA
TGAATTATCAGATCAGTGACAGCGCCATCAAGGATATGATCGCTGTTGCT
AGTGATGATGGTGATGACCAAGTCTCCATTGAAGGTTCTGGTGAAATTGA
CTTCGACGAATTCATGACGTTATTGAAGAAGATTTTAGCCCCACCATCTG
ATGAAGAACTCTTAATGAAATTCAAGAACTTCAGAAGATTTTCAACGATG
CTGATGATGATTCTTCCGGAAGTATTGATAAAAAAGAATTCAAAAAATTA
TCCAAGAAGTTGAATATTTTCCCTGGTGAAAAAGAATTCGAATCCATGTT
TAGAGAAGTTGACGCTGACGGGTGGAGGGTACAAATTCTCAGACGAAGAA
AAAAGACATGAATTTACAGCAGTTGCGAAACGACCAAGGAAATTATGAAA
ACTTGATCAAGGAAACAAAGGTTATTTGACGTTCAAAGATTTGAAGGCTG
GCTTCCAAGCAATGAATTATCAGATCAGTGACAGCGCCATCAAGGATATG
ATCGCTGTTGCTAGTGATGATGGTGATGACCAAGTCTCCATTGAAGGTTC
TGGTGAAATTGACTTCGACGAATTCATGACGTTATTGAAGAAGATTTTAG
CCCCACCATCTGATGAAGAACTCTTAATGAAATTCAAGAACTTCAGAAGA
TTTTCAACGATGCTGATGATGATTCTTCCGGAAGTATTGATAAAAAAGAA
TTCAAAAAATTATCCAAGAAGTTGAATATTTTCCCTGGTGAAAAAGAATT
CGAATCCATGTTTAGAGAAGTTGACGCTGACGGGTGGAGGGTACAAATTC
TCAGACGAAGAAAAAAGACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036353XLOC_036353Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057637-proteinTCONS_00057637-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057637-exon-scaffold_295-1575043694:12774..12867TCONS_00057637-exon-scaffold_295-1575043694:12774..12867Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1575043694:12388..12424TCONS_00057637-exon-scaffold_295-1575043694:12388..12424Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1575043694:11982..12125TCONS_00057637-exon-scaffold_295-1575043694:11982..12125Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1575043694:11250..11341TCONS_00057637-exon-scaffold_295-1575043694:11250..11341Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1575043694:10768..10915TCONS_00057637-exon-scaffold_295-1575043694:10768..10915Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1575043694:9633..10266TCONS_00057637-exon-scaffold_295-1575043694:9633..10266Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1510915933:12774..12867TCONS_00057637-exon-scaffold_295-1510915933:12774..12867Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1510915933:12388..12424TCONS_00057637-exon-scaffold_295-1510915933:12388..12424Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1510915933:11982..12125TCONS_00057637-exon-scaffold_295-1510915933:11982..12125Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1510915933:11250..11341TCONS_00057637-exon-scaffold_295-1510915933:11250..11341Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1510915933:10768..10915TCONS_00057637-exon-scaffold_295-1510915933:10768..10915Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1510915933:9633..10266TCONS_00057637-exon-scaffold_295-1510915933:9633..10266Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1491911889:12774..12867TCONS_00057637-exon-scaffold_295-1491911889:12774..12867Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1491911889:12388..12424TCONS_00057637-exon-scaffold_295-1491911889:12388..12424Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1491911889:11982..12125TCONS_00057637-exon-scaffold_295-1491911889:11982..12125Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1491911889:11250..11341TCONS_00057637-exon-scaffold_295-1491911889:11250..11341Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1491911889:10768..10915TCONS_00057637-exon-scaffold_295-1491911889:10768..10915Clytia hemisphaericaexon
TCONS_00057637-exon-scaffold_295-1491911889:9633..10266TCONS_00057637-exon-scaffold_295-1491911889:9633..10266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:9633..12867 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.757714	0.415054	0.841126	0.334466	0.172227	0.523685	0.399397	0.639121	4.23184	1.99749	3.26736	3.7821	39.1649	31.2327	19.9126	20.0659	11.7665	14.8021	44.5539	52.8743	37.8207	33.4549	15.9692	18.3695	16.4571	21.861	2.9331	1.9372	0.103803	0.439561
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00057637 vs. Swiss-Prot (Human)
Match: CETN2 (Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.726e-16
Identity = 47/151 (31.13%), Postives = 92/151 (60.93%), Query Frame = 2 
Query:   89 KMGGGYKFSDEEKRQLQKIFNDADDDSSGSIDXXXXXXXXXXLNIFPGEKEFESMFREVDADGSGEIDFDEFMTLL-KKILAPPSDEELLMKFKKLDQGNKGYLTFKDLKAGFQAMNYQISDSAIKDMIAVASDDGDDQVSIEEFTAVAKR 538
            +M    + ++E+K+++++ F+  D D +G+ID KE K   + L   P ++E + M  E+D +G+G+++F +F+T++ +K+    + EE+L  FK  D    G ++FK+LK   + +   ++D  +++MI  A  DGD +VS +EF  + K+
Sbjct:   18 RMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKK 168
The following BLAST results are available for this feature:
BLAST of TCONS_00057637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CETN21.726e-1631.13Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1[more]
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