|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057636 ID=TCONS_00057636|Name=TCONS_00057636|organism=Clytia hemisphaerica|type=transcript|length=1546bp
ATTTTAGTATAATTTTCCAGtgtggacgatattttggccattttttccaa
tgggAAGTGATCCCAGTGAGTTTATGAGAAGGGGTGTTATAAAAGAAGTC
TATATGAATTGTCGTTGGTAAAGTAGGCTACTTAAGTCTATTATTCTcaa
caaacaatgaaaattcCAAGTNGGGGTGTTATAAAAGAAGTCTATATGAA
TTGTCGTTGGTAAAGTAGGCTACTTAAGTCTATTATTCTcaacaaacaat
gaaaattccaagttttttctttatattgcAATGGGTGCGAAGAAATCACC
ACGTGTTTCATTGGAGAATTCATAATGATTTTCCTAAGACGAAATCCAGA
CAATGATTCTTCGAGATGATTTTTTCAGTCTCATAGTCTCTGTATTACAT
GATTGCCAGCTGATACCCCATGGTCCCCATGCCATTGATTTCGTTTGACC
AAATCACCAAGCCTTCTGTTGTATGGATCTGACAGTAATTCCCTTTCCTA
CCATCTACATTTTGTAGCTAACGACCAAAACGAGAATCATGATTTGCATT
TATCAGTGTGTTCACAATTACAAGTCGAAGCCGATTCGATCTCTACTGTC
CGGTCAACTCCTTCGTTACATTCGGACAGAGTGAATATTTTTCGGACACT
CGTCGACGCTTTGCAACATAAACATACAGTTTGAAAATATGGAATATCTT
GTAGTGGTTTCTCGTAAGACCGACAATTTCCGAGACATGCGTAAACGAGA
AACGACTCTGGTTTGCAACCAGGGCGAGTAACAGTTCGTTGGTATTGTTC
TCGGTAACAGAATGTTTCGATCTGGTTATAAGACCATGCATCTTCAGCTG
ATGTTAGATTCATGAGAGTCAttaagtaaacaaaacatttcaaaagaaCC
AAAGAGTTTGTCatctttcttgtttaatttacCAGCAAGTTGTCTTATAA
ACCTGCCCTCTTGTCTTTTCGTACAAATTTCCTCTCTTGATCTACTGTAT
AATCACATATAAATATCAATCAACACATATACTGATTTATAAAATGCTTC
TCTTTTATACTGATTTAACAAACTGTTATCGAGATCGTCTCGAACCCACA
AAACAATCAGTGTAGGAGGGTTCGTGTCCACGCAATAAGCTGCCATTAGG
AGTGACGAGCACTTCCCCACGGAGCGATTCATTAGTCAAGTCATGCGGTA
ATAGCTTATCACATTAGTAAATTTGTGACAACTTTGTACGTCATAATAGA
CTGATAATAAGAGAGTATTACGGGGTAATAATGTAATACTGTACTACGCT
GTGACCGGCTGTCATGATCATAAAATTTAGAGCCTAAAATGCCTTTTCCT
AagcaaaagaaagatttttgcgATTCTAGAACGACGGATGAATGAAGAGT
TTCAACTCCAGCCCCTTCGGTGGTATAAAGAGTTTCATATCTAGTGCCTT
CGGTGCTTTAAACTAAATAGTCATAATAGATTGGTAATAGAGCGTAATAC
AAGGAATAATACTTTTGTAATACGCTCTGGTCACTGTCATTATTTC Run BLAST on NCBI transcript from alignment at scaffold_295:13937..15574+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057636 ID=TCONS_00057636|Name=TCONS_00057636|organism=Clytia hemisphaerica|type=transcript|length=1638bp|location=Sequence derived from alignment at scaffold_295:13937..15574+ (Clytia hemisphaerica)
ATTTTAGTATAATTTTCCAGtgtggacgatattttggccattttttccaa
tgggAAGTGATCCCAGTGAGTTTATGAGAAGGGGTGTTATAAAAGAAGTC
TATATGAATTGTCGTTGGTAAAGTAGGCTACTTAAGTCTATTATTCTcaa
caaacaatgaaaattcCAAGTNGGGGTGTTATAAAAGAAGTCTATATGAA
TTGTCGTTGGTAAAGTAGGCTACTTAAGTCTATTATTCTcaacaaacaat
gaaaattccaagttttttctttatattgcAATGGGTGCGAAGAAATCACC
ACGTGTTTCATTGGAGAATTCATAATGATTTTCCTAAGACGAAATCCAGA
CAATGATTCTTCGAGATGATTTTTTCAGTCTCATAGTCTCTGTATTACAT
GATTGCCAGCTGATACCCCATGGTCCCCATGCCATTGATTTCGTTTGACC
AAATCACCAAGCCTTCTGTTGTATGGATCTGACAGTAATTCCCTTTCCTA
CCATCTACATTTTGTAGCTAACGACCAAAACGAGAATCATGATTTGCATT
TATCAGTGTGTTCACAATTACAAGTCGAAGCCGATTCGATCTCTACTGTC
CGGTCAACTCCTTCGTTACATTCGGACAGAGTGAATATTTTTCGGACACT
CGTCGACGCTTTGCAACATAAACATACAGTTTGAAAATATGGAATATCTT
GTAGTGGTTTCTCGTAAGACCGACAATTTCCGAGACATGCGTAAACGAGA
AACGACTCTGGTTTGCAACCAGGGCGAGTAACAGTTCGTTGGTATTGTTC
TCGGTAACAGAATGTTTCGATCTGGTTATAAGACCATGCATCTTCAGCTG
ATGTTAGATTCATGAGAGTCAttaagtaaacaaaacatttcAANGGTAAC
AGAATGTTTCGATCTGGTTATAAGACCATGCATCTTCAGCTGATGTTAGA
TTCATGAGAGTCAttaagtaaacaaaacatttcaaaagaaCCAAAGAGTT
TGTCatctttcttgtttaatttacCAGCAAGTTGTCTTATAAACCTGCCC
TCTTGTCTTTTCGTACAAATTTCCTCTCTTGATCTACTGTATAATCACAT
ATAAATATCAATCAACACATATACTGATTTATAAAATGCTTCTCTTTTAT
ACTGATTTAACAAACTGTTATCGAGATCGTCTCGAACCCACAAAACAATC
AGTGTAGGAGGGTTCGTGTCCACGCAATAAGCTGCCATTAGGAGTGACGA
GCACTTCCCCACGGAGCGATTCATTAGTCAAGTCATGCGGTAATAGCTTA
TCACATTAGTAAATTTGTGACAACTTTGTACGTCATAATAGACTGATAAT
AAGAGAGTATTACGGGGTAATAATGTAATACTGTACTACGCTGTGACCGG
CTGTCATGATCATAAAATTTAGAGCCTAAAATGCCTTTTCCTAagcaaaa
gaaagatttttgcgATTCTAGAACGACGGATGAATGAAGAGTTTCAACTC
CAGCCCCTTCGGTGGTATAAAGAGTTTCATATCTAGTGCCTTCGGTGCTT
TAAACTAAATAGTCATAATAGATTGGTAATAGAGCGTAATACAAGGAATA
ATACTTTTGTAATACGCTCTGGTCACTGTCATTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057636-exon-scaffold_295-1491911889:13937..14822 | TCONS_00057636-exon-scaffold_295-1491911889:13937..14822 | Clytia hemisphaerica | exon |
| TCONS_00057636-exon-scaffold_295-1510915933:13937..14822 | TCONS_00057636-exon-scaffold_295-1510915933:13937..14822 | Clytia hemisphaerica | exon |
| TCONS_00057636-exon-scaffold_295-1575043694:13937..14822 | TCONS_00057636-exon-scaffold_295-1575043694:13937..14822 | Clytia hemisphaerica | exon |
| TCONS_00057636-exon-scaffold_295-1491911889:14915..15574 | TCONS_00057636-exon-scaffold_295-1491911889:14915..15574 | Clytia hemisphaerica | exon |
| TCONS_00057636-exon-scaffold_295-1510915933:14915..15574 | TCONS_00057636-exon-scaffold_295-1510915933:14915..15574 | Clytia hemisphaerica | exon |
| TCONS_00057636-exon-scaffold_295-1575043694:14915..15574 | TCONS_00057636-exon-scaffold_295-1575043694:14915..15574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_295 | supercontig | scaffold_295:13937..15574 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
