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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057633 ID=TCONS_00057633|Name=TCONS_00057633|organism=Clytia hemisphaerica|type=transcript|length=1616bp
GTTTTTTCTAAACGTCATTATCtggatttttttgtcaaaataattatatt
ttcttgcttttcttcatttattttcattgcatttcactttatttttggtt
tctatattttatttctttttgtgcTACTGTTTATAGCTCAGAACTGATAC
ACATTCCATACACAGCTGTCCAAAACGATGAAATCTGTAGCAATCTTTCT
GGTTATCTGTCTCACCATTCGTCAAATTGAATGTGGCTCAGAACCAGGTC
CACCAGGGCCACCAGGACCTCCCGGTATGCCTGCCGCTCCAGCGCCTTGT
ACAGGGGAATGTGTTGGTCTTGGATGTGAACCAGCTTGTTTGGTTGGTTG
CTGTGGTTACCATGGCAGGTATGGAAAGTCTGGTAAATGGATCCGAAGTG
TTTTGGAGAAATATGTCGATGAAGAAGATTGAAATTAGCATTGCTTAGAT
TTTATGAagaattttagatattttttaatttaatatgaCGTGGCCAGGTA
CTAggttaaaactttcaaaaaactgaaaacatAAGATAGAAAAAAGCTTG
TTTTCCTAATATACTATAAATTCATCCAAGTTTTTAATGCTACTAAgatt
gaatgattattttttattttcaaggatTGACAcccaatattttcattttg
tagataattttgataaaaaggtgGAAATATTTAAAGACACATGACAAAAT
AATATTAATCTAGTTACAATTCTAGATATCATCCGGATGTAAAGCCTTAT
CTACACCAAAGAATATAACTTCAGCGTTGTATCATAGGTCGTCTTCATAA
TTTCCTTGGTCGTTTCGCAACTGCTGTAAATTCTTGAGAAAGAAAATatg
gaaatttaaaatttaatttcaaaagctCAGATAAGatggaaaatagacaa
aaaatttgttttttgacaGGGCCCGTTATTGATGCGTGAGCGACAGGAGT
TTGTATGGTCTTGATCTAATTGATGATTCGTCATCTTTTTAAGATAGAAT
GTGAATGTGGTACTCTTGAAAATACTGGGGTGATGGTTTCTACAATGATG
CAAGGGTGTTATACACTCTTCATTATAAAGGTTGCTCTTGATCTCTGAAA
CAGGGGTGTTGTTAGATCTACGAGACAGGGGTTCTACTTCAAACCTACGG
GACAGTTGTTTTGCTTTTAGATCTACAAGACAGGGGTGTTGTATTACCTT
CAatcgagacaggggtgttactCTAGACCTACGATACCAGTGTTGCTTTA
AATCAACAAGACAGGAGTGTTGCTTTAGTTCAACGAAACAGGGGTTTTAC
TTTCAGACCttcgagacaggggtgtttgatTACCTTCAATGGAGACTTGG
TCATCACCATCATCACTAGCAACAGCGATCATATCCTTGATGGCGCTGTC
ACTGATCTGATAATTCATTGCTTGGAAGCCAGCCTTCAAATCTTTGAACG
TCAAATAACCTTTGTTTCCTTGATCAAGTTTCTAATGATATCGGAAAGAA
AGTCAATGGTGGAAATTATGCTACGATAAGATAAAAACTCATTAAGAATG
AAGGCGAACATTGTTATTATATATTCTTCAAGGTTCTAAACGTTAAACAA
AATGGTCTTCCTTTCG Run BLAST on NCBI transcript from alignment at scaffold_295:8383..11050+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057633 ID=TCONS_00057633|Name=TCONS_00057633|organism=Clytia hemisphaerica|type=transcript|length=2668bp|location=Sequence derived from alignment at scaffold_295:8383..11050+ (Clytia hemisphaerica)
GTTTTTTCTAAACGTCATTATCtggatttttttgtcaaaataattatatt
ttcttgcttttcttcatttattttcattgcatttcactttatttttggtt
tctatattttatttctttttgtgcTACTGTTTATAGCTCAGAACTGATAC
ACATTCCATACACAGCTGTCCAAAACGATGAAATCTGTAGCAATCTTTCT
GGTTATCTGTCTCACCATTCGTCAAATTGAATGTGGCTCAGAACCAGGTC
CACCAGGGCCACCAGGACCTCCCGGTATGCCTGCCGCTCCAGCGCCTTGT
ACAGGGGAATGTAAGTGAAAAATCTCATTATTGCATGATTTTTATGTTAA
CATTTTTTTAGAAGTAGTattagtaaaaatatttcagcaGTATGAAGATC
TTAGCAATCATTATGGCTCTTACCCTTATGATTTTTGGATTAATTGAATG
TGGGGAGATGGGTCCACCAGGACCTCGGGGACCACCCGGGCCACCGGGAG
CGCCAGCTCCTTGTACTGGGGAATGTAAGTAATACTTTTCGAGGAGTTaa
tttaatgaaattgaatCTCCAAAAATAGGGGAGGGGCTTACtactcttta
taagaacatgcatGAATATGTACAGTTGAGTCTCTCTTCTCGCGTTTCTC
TGCACAATTAAGAGTGCTTGAGTAGAGCTTGTTACATAAAAATTTgtgta
tttcttctcaatatTTTCTTGCTTACGCATTGATCATTTGATTAGAAAGT
TaaatctctataactcgaacacgcacggagaACACAAACTTGGTCAgatt
taaggaaatttcgagttgaagaggttcgagttaaagaaattcCACTGTAA
TTCTTAGCTCTCTTTTTCAAAGCCCTGTGATCATCTAAAGAATTTACAGT
CAGTTTTGAACATTTTAGATACAGGAAAGTTTTCATGatttgaacctcta
taactcgaatgtctctttaactcgaacaagtttttctcgtcccttcagtt
aacaatgcctcatAAACTCATAAACGTTACTCCAtacataactcgaaatt
tcctaaACTCAAACAATTTTGCGTTTGCGTTTTGTATGACCTAAAGCAAT
AACTTGTAAGAAAGATACTTTCTAATTTACGGTTTTTGATGTTAAAGGCG
TATATTTCGGAAAATCTGAAAACGAAGacgaaaaaagtgaaacattttta
actcgACTTAATTCAGCCTTTTTTTCGAACTTTGAATCTCGctgatttat
gatttttattcaGATTTTTCCAACTATcttttttagatcaaaagtcATAG
CCCACCCAAAATTGTCCAAATCAGTTTATGTTGActtcaaaattttactt
ttcctTCCACAGGTGTTGGTCTTGGATGTGAACCAGCTTGTTTGGTTGGT
TGCTGTGGTTACCATGGCAGGTATGGAAAGTCTGGTAAATGGATCCGAAG
TGTTTTGGAGAAATATGTCGATGAAGAAGATTGAAATTAGCATTGCTTAG
ATTTTATGAagaattttagatattttttaatttaatatgaCGTGGCCAGG
TACTAggttaaaactttcaaaaaactgaaaacatAAGATAGAAAAAAGCT
TGTTTTCCTAATATACTATAAATTCATCCAAGTTTTTAATGCTACTAAga
ttgaatgattattttttattttcaaggatTGACAcccaatattttcattt
tgtagataattttgataaaaaggtgGAAATATTTAAAGACACATGACAAA
ATAATATTAATCTAGTTACAATTCTAGATATCATCCGGATGTAAAGCCTT
ATCTACACCAAAGAATATAACTTCAGCGTTGTATCATAGGTCGTCTTCAT
AATTTCCTTGGTCGTTTCGCAACTGCTGTAAATTCTTGAGAAAGAAAATa
tggaaatttaaaatttaatttcaaaagctCAGATAAGatggaaaatagac
aaaaaatttgttttttgacaGGGCCCGTTATTGATGCGTGAGCGACAGGA
GTTTGTATGGTCTTGATCTAATTGATGATTCGTCATCTTTTTAAGATAGA
ATGTGAATGTGGTACTCTTGAAAATACTGGGGTGATGGTTTCTACAATGA
TGCAAGGGTGTTATACACTCTTCATTATAAAGGTTGCTCTTGATCTCTGA
AACAGGGGTGTTGTTAGATCTACGAGACAGGGGTTCTACTTCAAACCTAC
GGGACAGTTGTTTTGCTTTTAGATCTACAAGACAGGGGTGTTGTATTACC
TTCAatcgagacaggggtgttactCTAGACCTACGATACCAGTGTTGCTT
TAAATCAACAAGACAGGAGTGTTGCTTTAGTTCAACGAAACAGGGGTTTT
ACTTTCAGACCttcgagacaggggtgtttgatTACCTTCAATGGAGACTT
GGTCATCACCATCATCACTAGCAACAGCGATCATATCCTTGATGGCGCTG
TCACTGATCTGATAATTCATTGCTTGGAAGCCAGCCTTCAAATCTTTGAA
CGTCAAATAACCTTTGTTTCCTTGATCAAGTTTCTAATGATATCGGAAAG
AAAGTCAATGGTGGAAATTATGCTACGATAAGATAAAAACTCATTAAGAA
TGAAGGCGAACATTGTTATTATATATTCTTCAAGGTTCTAAACGTTAAAC
AAAATGGTCTTCCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057633-exon-scaffold_295-1491911889:8383..8692 | TCONS_00057633-exon-scaffold_295-1491911889:8383..8692 | Clytia hemisphaerica | exon |
| TCONS_00057633-exon-scaffold_295-1510915933:8383..8692 | TCONS_00057633-exon-scaffold_295-1510915933:8383..8692 | Clytia hemisphaerica | exon |
| TCONS_00057633-exon-scaffold_295-1575043694:8383..8692 | TCONS_00057633-exon-scaffold_295-1575043694:8383..8692 | Clytia hemisphaerica | exon |
| TCONS_00057633-exon-scaffold_295-1491911889:9745..11050 | TCONS_00057633-exon-scaffold_295-1491911889:9745..11050 | Clytia hemisphaerica | exon |
| TCONS_00057633-exon-scaffold_295-1510915933:9745..11050 | TCONS_00057633-exon-scaffold_295-1510915933:9745..11050 | Clytia hemisphaerica | exon |
| TCONS_00057633-exon-scaffold_295-1575043694:9745..11050 | TCONS_00057633-exon-scaffold_295-1575043694:9745..11050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_295 | supercontig | scaffold_295:8383..11050 + |
Blast
The following BLAST results are available for this feature:
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