TCONS_00057630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057630
Unique NameTCONS_00057630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057630 ID=TCONS_00057630|Name=TCONS_00057630|organism=Clytia hemisphaerica|type=transcript|length=481bp
CTTCGTGTTCAATATCATTATTTTGTTGATTGGTCGTTCCTTCATTGGAT
TGTAAAATCAAAAAAcctttatatttttcatttttaataatATTGTTTGT
CGTTTTTTCACTGCAGTCAGCATTACCAATCAAAAACGAAGGTGGGTCAA
AATGAAACTCAGTGCTACCCGCTGTTGAATCTGGGTTGATAACAATTATA
TCTTCATTCTCATCACTCATCTTGAATAGAATCAGAAGgagaggaaaaaa
taaaaaaaggccaATTTCAAATGCAAACGTGAGTCAGAAAACATCGAAAG
AAAGGTTCGGACAATTGTTTATCATATTCTTACACTCTTCATACTTTTAT
ACAACTGCTTCCCAATCCACGAAAACTTTATTCTTCTGTACGCTTTGTGA
CACAAATCCTTTTATACAACAACCTCCAATCCAATCAATTTGTATTTCTT
Ttagtttaaattatttttgtttgtttttctg
Run BLAST on NCBI

transcript from alignment at scaffold_294:147275..147755

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057630 ID=TCONS_00057630|Name=TCONS_00057630|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at scaffold_294:147275..147755 (Clytia hemisphaerica)
cagaaaaacaaacaaaaataatttaaactaAAAGAAATACAAATTGATTG
GATTGGAGGTTGTTGTATAAAAGGATTTGTGTCACAAAGCGTACAGAAGA
ATAAAGTTTTCGTGGATTGGGAAGCAGTTGTATAAAAGTATGAAGAGTGT
AAGAATATGATAAACAATTGTCCGAACCTTTCTTTCGATGTTTTCTGACT
CACGTTTGCATTTGAAATtggcctttttttattttttcctctcCTTCTGA
TTCTATTCAAGATGAGTGATGAGAATGAAGATATAATTGTTATCAACCCA
GATTCAACAGCGGGTAGCACTGAGTTTCATTTTGACCCACCTTCGTTTTT
GATTGGTAATGCTGACTGCAGTGAAAAAACGACAAACAATattattaaaa
atgaaaaatataaaggTTTTTTGATTTTACAATCCAATGAAGGAACGACC
AATCAACAAAATAATGATATTGAACACGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036348XLOC_036348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057630-exon-scaffold_294-1491911889:147275..147755TCONS_00057630-exon-scaffold_294-1491911889:147275..147755Clytia hemisphaericaexon
TCONS_00057630-exon-scaffold_294-1510915933:147275..147755TCONS_00057630-exon-scaffold_294-1510915933:147275..147755Clytia hemisphaericaexon
TCONS_00057630-exon-scaffold_294-1575043694:147275..147755TCONS_00057630-exon-scaffold_294-1575043694:147275..147755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_294supercontigscaffold_294:147275..147755 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.92215	0.882029	1.61503	1.04108	0	0	0	0.856112	1.0763	1.11079	0.403614	0.542043	1.33268	0.95847	1.21809	0.648791	3.64081	2.21671	0.238029	0.893333	1.84187	2.99136	1.47732	0.723168	0	0	0	0.485643	1.18006	0.807592
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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