TCONS_00057617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057617
Unique NameTCONS_00057617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057617 ID=TCONS_00057617|Name=TCONS_00057617|organism=Clytia hemisphaerica|type=transcript|length=514bp
atttttcgagtttgaTGAATTCATGAAACGCTGCATTTACTTATGGTATT
TTGATATTATTCCCTTTACTTCTTTCAGGATTAGTTGAACAagattgtca
ttttgaaaagagGATATCCCCTTACATGATCAGTTCGGGGATAACCACTA
TCACTTGTTTTGGATGTCTCGCTCTTGGTCTTTACATAAAAGCTGAAACT
GAGCGAAACACTCTGGGAAATGTGCTTCTGGTAATAGTTTTTGTACCTGG
CATTGCACACCGGTTAAGCTGTAGATGAGCGCACTTCAAGTcatttggat
gttgaagctggcttgaATATagaaagttcaaaatatttaaaaaaaatcaa
aagtgaagaTTAAAGAtgtagaagaaaaaaattaaaaaaaacagacaaaa
tcTACCCGCTTTGGAGGGATTTAGAATAAATCAAGGCACATTTGAAATCA
GTGAAGTTCAATGTTTTAGTAAAATAAAATGAACATTTTGTATTTCTGAT
GATTGCAGTAAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_294:141778..142634+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057617 ID=TCONS_00057617|Name=TCONS_00057617|organism=Clytia hemisphaerica|type=transcript|length=857bp|location=Sequence derived from alignment at scaffold_294:141778..142634+ (Clytia hemisphaerica)
atttttcgagtttgaTGAATTCATGAAACGCTGCATTTACTTATGGTATT TTGATATTATTCCCTTTACTTCTTTCAGGATTAGTTGAACAagattgtca ttttgaaaagagGATATCCCCTTACATGATCAGTTCGGGGATAACCACTA TCACTTGTTTTGGATGTCTCGCTCTTGGTCTTTACATAAAAGCTGAAACT GAGCGAAACACTCTGGGAAATGTGCTTCTGGTAATAGGTATTATATTATG GGTCTGTGTGTTTGGTCTTCAAATCTGGGGAAGTATCATAATTCTTCCCC ATTGGGACAAGTGGAATAAAAAGTTGGACCAATTCCCTTGCAATCAGCAT ATCTTCAAATTTGGGTTCTCTATGATTACTCTATTTTGGATTTTAACAGG TTTGAGTATTAATTTCTGTTTGAAAGGTATTTTGGATAAGTCGTGATTTT CATCTCTGCTAAGCATTTTATTCGATACACTATATACTATTTTTTATATC CATTCTCTTTTATTTCATTCAACTTAATCTTAATTGATGATGGGTAGATC CCAATAAATTCTCTTATTAATGTTTACCAGTTTTTGTACCTGGCATTGCA CACCGGTTAAGCTGTAGATGAGCGCACTTCAAGTcatttggatgttgaag ctggcttgaATATagaaagttcaaaatatttaaaaaaaatcaaaagtgaa gaTTAAAGAtgtagaagaaaaaaattaaaaaaaacagacaaaatcTACCC GCTTTGGAGGGATTTAGAATAAATCAAGGCACATTTGAAATCAGTGAAGT TCAATGTTTTAGTAAAATAAAATGAACATTTTGTATTTCTGATGATTGCA GTAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036338XLOC_036338Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057617-exon-scaffold_294-1491911889:141778..142014TCONS_00057617-exon-scaffold_294-1491911889:141778..142014Clytia hemisphaericaexon
TCONS_00057617-exon-scaffold_294-1510915933:141778..142014TCONS_00057617-exon-scaffold_294-1510915933:141778..142014Clytia hemisphaericaexon
TCONS_00057617-exon-scaffold_294-1575043694:141778..142014TCONS_00057617-exon-scaffold_294-1575043694:141778..142014Clytia hemisphaericaexon
TCONS_00057617-exon-scaffold_294-1491911889:142358..142634TCONS_00057617-exon-scaffold_294-1491911889:142358..142634Clytia hemisphaericaexon
TCONS_00057617-exon-scaffold_294-1510915933:142358..142634TCONS_00057617-exon-scaffold_294-1510915933:142358..142634Clytia hemisphaericaexon
TCONS_00057617-exon-scaffold_294-1575043694:142358..142634TCONS_00057617-exon-scaffold_294-1575043694:142358..142634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_294supercontigscaffold_294:141778..142634 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.465997 0 0 0.297079 2.23164 1.84722 2.68753 3.40608 2.15863 1.00204 2.59606 1.41963 1.11009 1.69736 0.406172 0.82958 0.410926 0.316394 0.850037 0.18422 0 0 0.584578 1.07377 1.34072 2.19515 0 0 2.0252 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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