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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057615 ID=TCONS_00057615|Name=TCONS_00057615|organism=Clytia hemisphaerica|type=transcript|length=2748bpRun BLAST on NCBI protein sequence of TCONS_00057615-protein >TCONS_00057615-protein ID=TCONS_00057615-protein|Name=TCONS_00057615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=752bp MDHNNAEIKIEIKEEEPWWEPEVLTATNHSNFIGQTQENCNPLAYLDINNRun BLAST on NCBI transcript from alignment at scaffold_294:133854..137041+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057615 ID=TCONS_00057615|Name=TCONS_00057615|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at scaffold_294:133854..137041+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_294:133854..137041+ >TCONS_00057615 ID=TCONS_00057615|Name=TCONS_00057615|organism=Clytia hemisphaerica|type=CDS|length=4518bp|location=Sequence derived from alignment at scaffold_294:133854..137041+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057615 vs. Swiss-Prot (Human)
Match: ZN234 (Zinc finger protein 234 OS=Homo sapiens GN=ZNF234 PE=2 SV=3) HSP 1 Score: 256.529 bits (654), Expect = 5.858e-73 Identity = 148/424 (34.91%), Postives = 225/424 (53.07%), Query Frame = 3
Query: 1056 FKCDLCQKSLKGRTRFEAHKKKH--ERVFQCNECGKVLRHKTTLELHLLAHQGLNERFNCPECEKTFAHRKHLKEHMAVHKEEEPFKCEKCGQSFKMKKWLKTHQYSHMENHPFKCNTCEKCFTSASSLRRHQGTHASVRPFICDVCSKGFYRQDNFKLHQETH--QPALKCDQCDKTFTMKHSLENHKKLHLDIRPFKCKECGASYTQKKYLTDHIKKHSGK--YDCKICNKSFALISYLKLHMDTHPDPSKTYKCNTCDQHFSSTTTLKYHVVSKHDEK-YKCHCCQRCFISRSSLNMHLKRKNCLKKLFKCEVCVSSFQTENALSKHYKKSHNETYLFECEKCGKSFTQKAEYNQHTALHMKACKFECNKCGDTFTSIPILRKHKAKHRDDTTNKCKKCGKCFSSVKALKRHSSLHNVLMP 2306
+KCD+C K + + H++ H E+ F+C ECGK ++TL +H H G + +NC EC + F H HL+EH +H E+PFKC+ CG++F+ + L H H P+KC C KCFT +S+LR HQ H +P+ C+ C K F + F+ H+ H + C C K F S + H+ +H +P+KC ECG S+ K + H+ H+G+ Y C++C K+F SYLK+H+ H K +KC C Q F+ ++ L+ H + EK YKC C + F R+ L +H R + +K + CE C F + L H ++ H+ F+CE+CGKSF++ A H +H ++C +CG F L H+ H + C +CGK FS +L+ H S+H P
Sbjct: 204 YKCDVCGKEFSQSSHLQTHQRVHTVEKPFKCVECGKGFSRRSTLTVHCKLHSG-EKPYNCEECGRAFIHASHLQEHQRIHTGEKPFKCDTCGKNFRRRSALNNHCMVHTGEKPYKCEDCGKCFTCSSNLRIHQRVHTGEKPYKCEECGKCFIQPSQFQAHRRIHTGEKPYVCKVCGKGFIYSSSFQAHQGVHTGEKPYKCNECGKSFRMKIHYQVHLVVHTGEKPYKCEVCGKAFRQSSYLKIHLKAH-SVQKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHC-RIHTGEKPYNCEECGKVFSQASHLLTH-QRVHSGEKPFKCEECGKSFSRSAHLQAHQKVHTGEKPYKCGECGKGFKWSLNLDMHQRVHTGEKPYTCGECGKHFSQASSLQLHQSVHTGEKP 623 HSP 2 Score: 203.756 bits (517), Expect = 4.326e-55 Identity = 137/427 (32.08%), Postives = 196/427 (45.90%), Query Frame = 3
Query: 1125 ERVFQCNECGKVLRHKTTLELHLLAHQGLNERFNCPECEKTFAHRKHLKEHMAVHKEEEPFKCEKCGQSFKMKKWLKTHQYSHMENHPFKCNTCEKCFTS----------------------------ASSLRRHQGTHASVRPFICDVCSKGFYRQDNFKLHQETH--QPALKCDQCDKTFTMKHSLENHKKLHLDIRPFKCKECGASYTQKKYLTDHIKKHSGK--YDCKICNKSFALISYLKLHMDTHPDPSKTYKCNTCDQHFSSTTTLKYHVVSKHDEK-YKCHCCQRCFISRSSLNMHLKRKNCLKKLFKCEVCVSSFQTENALSKHYKKSHNETYLFECEKCGKSFTQKAEYNQHTALHMKACKFECNKCGDTFTSIPILRKHKAKHRDDTTNKCKKCGKCFSSVKALKRHSSLHNVLMP 2306
++ +QC+E K +LH H G + C EC K+F + L H VH E+ +KC+ CG+ F L+THQ H PFKC C K F+ AS L+ HQ H +PF CD C K F R+ H H + KC+ C K FT +L H+++H +P+KC+ECG + Q H + H+G+ Y CK+C K F S + H H K YKCN C + F + H+V EK YKC C + F S L +HLK + ++K FKCE C F + L H + H ++CE+CGK F+++A+ H +H + C +CG F+ L H+ H + KC++CGK FS L+ H +H P
Sbjct: 145 QKFYQCDEYKKSFTDVFNFDLHQQLHSG-EKSHTCDECGKSFCYISALHIHQRVHMGEKCYKCDVCGKEFSQSSHLQTHQRVHTVEKPFKCVECGKGFSRRSTLTVHCKLHSGEKPYNCEECGRAFIHASHLQEHQRIHTGEKPFKCDTCGKNFRRRSALNNHCMVHTGEKPYKCEDCGKCFTCSSNLRIHQRVHTGEKPYKCEECGKCFIQPSQFQAHRRIHTGEKPYVCKVCGKGFIYSSSFQAHQGVHTG-EKPYKCNECGKSFRMKIHYQVHLVVHTGEKPYKCEVCGKAFRQSSYLKIHLKAHS-VQKPFKCEECGQGFNQSSRLQIH-QLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFSQASHLLTHQRVHSGEKPFKCEECGKSFSRSAHLQAHQKVHTGEKP 567 HSP 3 Score: 190.66 bits (483), Expect = 9.466e-51 Identity = 118/370 (31.89%), Postives = 185/370 (50.00%), Query Frame = 3
Query: 1056 FKCDLCQKSLKGRTRFEAHKKKH--ERVFQCNECGKVLRHKTTLELHLLAHQGLNERFNCPECEKTFAHRKHLKEHMAVHKEEEPFKCEKCGQSFKMKKWLKTHQYSHMENHPFKCNTCEKCFTSASSLRRHQGTHASVRPFICDVCSKGFYRQDNFKLHQETH--QPALKCDQCDKTFTMKHSLENHKKLHLDIRPFKCKECGASYTQKKYLTDHIKKHSGK--YDCKICNKSFALISYLKLHMDTHPDPSKTYKCNTCDQHFSSTTTLKYHVVSKHDEK-YKCHCCQRCFISRSSLNMHLKRKNCLKKLFKCEVCVSSFQTENALSKHYKKSHNETYLFECEKCGKSFTQKAEYNQHTALHMKACKFE 2144
+KC+ C K ++F+AH++ H E+ + C CGK + ++ + H H G + + C EC K+F + H + H+ VH E+P+KCE CG++F+ +LK H +H PFKC C + F +S L+ HQ H +P+ C+ C KGF R+ + K+H H + C++C K F+ L H+++H +PFKC+ECG S+++ +L H K H+G+ Y C C K F L +H H K Y C C +HFS ++L+ H EK YKC C + F SRSS + +R + +K +KCE+C GK F+ ++ H +H +E
Sbjct: 344 YKCEECGKCFIQPSQFQAHRRIHTGEKPYVCKVCGKGFIYSSSFQAHQGVHTG-EKPYKCNECGKSFRMKIHYQVHLVVHTGEKPYKCEVCGKAFRQSSYLKIHLKAHSVQKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFSQASHLLTHQRVHSGEKPFKCEECGKSFSRSAHLQAHQKVHTGEKPYKCGECGKGFKWSLNLDMHQRVHTG-EKPYTCGECGKHFSQASSLQLHQSVHTGEKPYKCDVCGKVF-SRSSQLQYHRRVHTGEKPYKCEIC-----------------------------GKRFSWRSNLVSHHKIHAAGTFYE 681 HSP 4 Score: 155.992 bits (393), Expect = 3.108e-39 Identity = 105/347 (30.26%), Postives = 163/347 (46.97%), Query Frame = 3
Query: 1281 AVHKEEEPFKCEKCGQSFKMKKWLKTHQYSHMENHPFKCNTCEKCFTSASSLRRHQGTHASVRPFICDVCSKGFYRQDNFKLHQETH--QPALKCDQCDKTFTMKHSLENHKKLHLDIRPFKCKECGASYTQKKYLTDHIKKHSGK--YDCKICNKSFALISYLKLHMDTHPDPSKTYKCNTCDQHFSSTTTLKYHVVSKHDEK-YKCHCCQRCFISRSSLNMHLKRKNCLKKLFKCEVCVSSFQTENALSKHYKKSHNETYLFECEKCGKSFTQKAEYNQHTALHMKACKFECNKCGDTFTSIPILRKHKAKHRDDTTNKCKKCGKCFSSVKALKRHSSLHNVLMP 2306
H ++ ++C++ +SF HQ H C+ C K F S+L HQ H + + CDVC K F + + + HQ H + KC +C K F+ + +L H KLH +P+ C+ECG ++ +L +H + H+G+ + C C K+F S L H H K YKC C + F+ ++ L+ H EK YKC C +CFI S H +R + +K + C+VC F ++ H + H ++C +CGKSF K Y H +H ++C CG F L+ H H KC++CG+ F+ L+ H +H P
Sbjct: 140 TTHTGQKFYQCDEYKKSFTDVFNFDLHQQLHSGEKSHTCDECGKSFCYISALHIHQRVHMGEKCYKCDVCGKEFSQSSHLQTHQRVHTVEKPFKCVECGKGFSRRSTLTVHCKLHSGEKPYNCEECGRAFIHASHLQEHQRIHTGEKPFKCDTCGKNFRRRSALNNHCMVHTG-EKPYKCEDCGKCFTCSSNLRIHQRVHTGEKPYKCEECGKCFIQPSQFQAH-RRIHTGEKPYVCKVCGKGFIYSSSFQAH-QGVHTGEKPYKCNECGKSFRMKIHYQVHLVVHTGEKPYKCEVCGKAFRQSSYLKIHLKAHSVQKPFKCEECGQGFNQSSRLQIHQLIHTGEKP 483 HSP 5 Score: 108.227 bits (269), Expect = 5.492e-24 Identity = 80/277 (28.88%), Postives = 118/277 (42.60%), Query Frame = 3
Query: 1536 THQPALKCDQCDKTFTMKHSLENHKKLHLDIRPFKCKECGASYTQKKYLTDHIKKHSGK--YDCKICNKSFALISYLKLHMDTHPDPSKTYKCNTCDQHFSSTTTLKYHVVSKHDEK-YKCHCCQRCFISRSSLNMHLKRKNCLKKLFKCEVCVSSFQTENALSKHYKKSHNETYLFECEKCGKSFTQKAEYNQHTALHMKACKFECNKCGDTFTSIPILRKHKAKHRDDTTNKCKKCGKCFSSVKALKRHSSLHNVLMPSTFTTTRPGRYITSNFR 2357
T Q +CD+ K+FT + + H++LH + C ECG S+ L H + H G+ Y C +C K F+ S+L+ H H K +KC C + FS +TL H EK Y C C R FI S L H ++ H F+C+ CGK+F +++ N H +H ++C CG FT LR H+ H + KC++CGKCF + H +H P G +S+F+
Sbjct: 143 TGQKFYQCDEYKKSFTDVFNFDLHQQLHSGEKSHTCDECGKSFCYISALHIHQRVHMGEKCYKCDVCGKEFSQSSHLQTHQRVHT-VEKPFKCVECGKGFSRRSTLTVHCKLHSGEKPYNCEECGRAFIHASHLQEH------------------------------QRIHTGEKPFKCDTCGKNFRRRSALNNHCMVHTGEKPYKCEDCGKCFTCSSNLRIHQRVHTGEKPYKCEECGKCFIQPSQFQAHRRIHTGEKPYVCKVCGKGFIYSSSFQ 388 The following BLAST results are available for this feature:
BLAST of TCONS_00057615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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