TCONS_00057614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057614
Unique NameTCONS_00057614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057614 ID=TCONS_00057614|Name=TCONS_00057614|organism=Clytia hemisphaerica|type=transcript|length=1398bp
TTACCAGTTAACGATATAACGCTCGAGGGATGATGgtgatgaaaattatt
ttcagttcaGTAATTCTGGTGACTTTTCTCACTGTAAAAGCTCAAAATGA
CGGAGGTTTTTTTAATATTGCACACATGTGCAACAATATCGATACGTTGG
ATTGGGCAGTTAGAGAAGGTGCAAACGCTATCGAGGCTGACTTACAATTT
GATGACCAAGGCAATCCAAAGAGATTCTACCATGGAGCTCCATGTGATTG
TAATTGCATGTGCAATTTccACAAAATATTCGTCAAAAATTGCTTTGATT
TGGTTGGACAGCAAAGTCAAAGGGAAAGGTTATTCTGAAGAAACACTCAG
AGATGCTGCCCGTAATCTTATCAACGTGTTAGAGGACAACTTATTCAGTC
TTGGTTATAAGGGTGTAGTGTTGATCGGTGCAGAGGGTCATGAAATTGCA
TCTTACTTCAATGAGGTTTCCAAGACCACAAGTACCTTTAAAGATCGAAT
TTACGTCACAATGGATAGTGTTACAATGAAAACGGCTCGAAACAATTTGG
ACTttaccaatttcaaaaacatcatttataacaACGGAATGACTGGTTGT
TCAccgagaaaaatcaaaagtgactTATTGACAGCTATCAAGGACAATGT
TGATAAAGGAGTGTTCAGTGCAGCCTTTACATGGACTTACAATTTGAAGA
GATCCATGAGAAGAGTGGCTCCTTATTTCAATGGCATCATAACCAATAGT
CCACCGTATCTCAACAAAGTTGTCAAAGAAAAAGGTCTCCGTTTGGCAAT
ACCAGGTGAACGTTTACCAGAAGCGACAAGTTCGATTGTTGAAGACGTTC
CAGATGATGAAATGTATGACTCTGAAGAAGATTTGACCAATGATAGTGAA
GAGCTCTAAATTCATCCATTTACCAACAATGACTCCAATGGAATCTTTAG
GAATATATATTTTACCATGAGATATAAACAATTGGACAGCCATCTtctct
ttgtctttttgtagaaagcactgctagcttcgtttcCACCTCGTTAAAAT
CATTGAAGCTTCATTGAAAAGctttaaatttatcaatttgccaGCAATGA
CTCCAATTAAACTTTTAGGAATAGATATTTTACTCTAATTATAAAATTGC
AAACAAAAGCCAACTAAGATTTTGTTCTGTTTCTCAACCCTTTTTTCCAT
TTCTAAGCTGTCGTTCAAGAAAGATTGCATTCTTCAATATCAAGAATTAG
CCCAATCATCTCAGAAAATCATCTTTTTGGCCCAGTATTGGTAGTTTACC
AAAATACGCTTATCGACTACACGTATTTTTAtgagaatggtgttttttca
tttcatcatagatatttttagctttttaaggAAAATCATACACGTGCA
Run BLAST on NCBI

transcript from alignment at scaffold_294:118630..125928+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057614 ID=TCONS_00057614|Name=TCONS_00057614|organism=Clytia hemisphaerica|type=transcript|length=7299bp|location=Sequence derived from alignment at scaffold_294:118630..125928+ (Clytia hemisphaerica)
TTACCAGTTAACGATATAACGCTCGAGGGATGATGgtgatgaaaattatt
ttcagttcaGTAATTCTGGTGACTTTTCTCACTGTAAAAGGTATGTTAAA
AAAAGCCAATAACTCTTCTTACGTTTTAAGACTTAattaatctcataaca
gatcatccattctgcgcatacCAACTTCTGCTCTAAAGGGAAATGGCGAA
TGTGACCACGGCTGTTCAGCTGTAACATTCAAAACCACGTTTTCTTTTAC
TTGAAAAACtaaagcgaaagcgactgggttctatTGCTTATGtttataat
acaccttttcgaccgtagccgccaattaccgtgcgggcatttttttgtcc
cagactttttttcgcaccaatagacaataaaaaaaaggtgtaaaaaaagg
attggatcgagtttaggcgcctgaccgcgcgaatACGGtcaaaaaaggtg
tattggtgCTTGTTTTGGTGCAAAAGTTTTGCATTAGCCAATCACCTCAC
TCAAAAGATCACTTAATATTCATCCCAATTCTGGATGAAAAAAGATTAAG
GCGTTGCGTCAAtctgggcagattctcttacggagccatggcCTTTAGTG
TGTATACGTAGCAGCACGGAGTAATCAGGATCTTCTCGAAGATTAGGACG
TCAATATCGTTAAATGTGGTTCTTTTGACAATTTATTTGGGACACACTCA
TTTTATGAAAAGTGCAACTCACTTTACGATTCCCTTACGTCTTTTAAGAG
TTCGTGACAAAAGtgcatttctttttaattttgccatagtcccatagtcc
gtataaaaaaaccTTGGTCTGGAGGCCTATTATTTTAAGATAGAAATAGA
TTTGCTCAGGTTTTGACCACTTTACCAAGTCCTCCTTTttggattggttt
aagatttaatcacatgatcagaAAATGAGCAAAACAAGCCAATTtctcaa
attattattttgcaTATATTTTAGCTCAAAATGACGGAGGTTTTTTTAAT
ATTGCACACATGTGCAACAATATCGATACGTTGGATTGGGCAGTTAGAGA
AGGTGCAAACGCTATCGAGGCTGACTTACAATTTGATGACCAAGGCAATC
CAAAGAGATTCTACCATGGAGCTCCATGTGATTGTAATTGCATGTGCAAT
TTGTAAGTCTATACGGAACAATCACCAAACTTCAACCAAGTCCCTTAAGG
ACTGTTCATATATGGAGATGGGATGGCCCGGTTAGGTGAGGTGGGGTAGA
TTTTCAAACGTCACGTGATATGTTTTTAGCCATTTGATTCGTCGAAAACT
GTGACGTAGCGCTCGAAAATCCATCCCGTCTCACCTAGCCGGGCCAACTC
ACCACCATATAAAAAGCCCCTTAGTACAagcccttctcacagacccggta
agattttttcagccTGTTGGAGTAACattaacggactgaaactcaattGC
TATTCCAATGTTGTTTCCTCGTTTTAATTgtggatttgaattccattgtt
tttaagtcagaataTTCAGTTGTATTGAAAAAATGGGACAATATTTtgcc
gaggggtaaatcactcgaaagATTATGTtcgagatttatttttgatttat
tattgatttatgatttatttttgatttatttttaagttgtttgtttgaga
tttttttagtgattttcccCTGGTATTTTGcagtgaagatttttttattt
gatcattttcagtggagacaaaaattggagtatgaTCATAGtgtcccccc
cttttttaaaggGGAGGGGACCAATTTTCCGATTTTGGATGGGTGAGGgg
ggaaatgaaaatttgaatagtaagggggggggagagggggggaaacatcg
atagttggcaaatttggttgggggagtgtgaaatcacttcaactttatct
cagcaaccaaggtcagtccacatgatatcatgtgattagttcatgattga
aaaattcaCTAGGCATAAAAACTGTACAGAAacattttcgttctattttg
tctagcattccttttgcagcaaaatcttacgtttgtgtcaggttgaaatt
tgagagaTTTATATGGGTATATGGGGGGGGGTCTTTCTGAAgaagaattt
tctggggggaaagcaaaaaagaaggggaaactaaaaaactgaaaagtcat
acGGGGAAAAAAAGAGtggggagatttaaaaaaatcaagatttggtgggg
ggaacaaaccctggaggacactatgatgATTTTCCACTGGCGActatatt
ttggtcaattttccaaTTGGAATTggtcccactgggtctgtgagaagggg
gtgtcttagTTCACTTTTTATGAGTTCATGAAAGTCTTGTTTCAGCAGTC
CATTAGTCAATTAGAATGTGGTACAAGTGGCTATGGCTAGGAGATTGGGC
AGCTCTCTCTAAGGGGGACAAAAAACCAAACCAATCTCTAGAAAATATGG
TCACAAAAGCACAAAAAATAAGaatcttttaagatttttgaatATATGGA
CCAATTATTGATGGGAACTTCTGAAGGgccaaaaacacttttttgtaaGA
TATCTTCAAGACAGTATCAGGGATTTGAATTTGTTGTGGTTCAGATTTTT
GATAAGGTTGATTATTTTATCCAGCTTTTTTATATGTCTTTTCAGCCATC
TAACTTGTTATTGGTTTCGGCCACACACAGTTTGTTATCCATTGAGTACA
AATGTCAAGAATTGCGACGCAGAGGCCGATGTTACATTATGGATGAGAAG
AGCAGgtgaaaacaatttgaaaaacttcTCCAAGAGCTGACTCGgatagg
ctgcacgcatcccctctgatatgttttgttATAGGGGATGGGTATTGTgc
ataaaattcccgtccgagagttatGCGTcctctatatcaaaacatatcag
aggggatgcgtgcaacCTATGACTCAGATTGAAAAGAACCGTAGAAGTTG
GCNacatatcagaggggatgcgtgcaacCTATGACTCAGATTGAAAAGAA
CCGTAAAAGTTGGACCTTAACTGTGTAAAGATTTAGCTGAATTTGAACAC
AAAGTCAACTGTTTGAAAATGTTGCCTAAAAACATCTTCTTGTTCTCGCA
TCCTTACAGTGTACCGTTATTCCAACCTCGTTCTCATGCATTAtctcttt
ttttattaattaGGATTAGCCCTGGACTTGGCTGGGTTTTCATCGTCTGT
CTGAGGTGATTATCGAAAAAGATTAAGTAATGTTTGAACATTATGTTTAC
TACCTCTTTCGAGAGTATTGatcactttttctttttattcattttcagcc
ACAAAATATTCGTCAAAAATTGCTTTGATTTGGTTGGACAGCAAAGTCAA
AGGGAAAGGTTATTCTGAAGAAACACTCAGAGATGCTGCCCGTAATGTAA
ATACTGTAcctagattttttatttttaacataCAATCGACTCTTGCTAAT
CCAAACTACTAttcttcgaatttttttttatgattcgaACTACTTCTCAG
TCCCCATCAAGGGTAAAAGATATCCTTTACAATTCGAAAAGCATTTTTTT
GGCAAATgccaaaagggggggggggattaGATGCGAATGGGAAAATCTCT
AGGTGGGGGCATACTTTATGCATTTTTTAGCAAAACAGTGTAAAAACATA
CCTTTTTCAGAGAAATCACTCAATTTTGTATCCAAAAATGTCATCTTTTA
GACACAAAACGCATGAAATTGAGGACTTTGaggattgaaaaatttttccg
aaaaggGGGACAAAgaggtttttcaaaatctaggAGGCGGATTTAAAAGG
GAGGCAACCAACCCACTAAGACACTATTTAAAAGAACACTAGGACACTTC
TAGGACACTACAAAATTTAGACTCCCCTTCCGAGTTCGAATAGGCTAGGG
TAAACTATAATTTCAGACACGAAGAAGTGTTGATTGATCTTCGAAggtaa
tttcataaaaatcatccATTCTTCCAACAACATACCATCCTAAAATTCGA
AATTAATAAATAATCCTTTTGTATAGTAAAGAAAACGAGTTAGATAAATT
TCATACAGGGTGGCAATCTTTGGTGAAagaattaccttaagggaagacat
tttggcggaaagaaactTAAATTCATAGGCCCATGAAACTCGTAGGCCAT
Taaataaattctcgccaaatttaattttctttcaatctagtctctatttc
tcctaaaagccctttttttctcttttttcagctaaaatattaaacaaaaa
tgggttcgttcgccaaaattaattctcgccaaatttagaaattttattaa
atcgccaaaataaatatcGCAAAATTGCACCCTAATTGGCGAATGGGTTC
ATTCGCAAACATttcttctcgccaaaatttcttctcttaataGGCCGTTA
GGGCCATTCTTTTAGGACCCGTGACAACAATTTCCGGAGtggaatttttt
tgttcattcgaaagaagaatgtatttagaaacttttttgagaaggAGTAA
ATTAATTAGGTCcggcaatttttttttatgggGAAAAgactgacgtcaca
agcaaaaaccCTCGGGACCCGAAATTTGACGAAATTTCAAAGTCGCTAAA
ACACAAAACCACATAGAGGACTTTAAAGCGTACATGGTCGATTTCTCAAC
GTAACTAAATTGCTAAAttgcttgtgacgtcagtcTTTTCCACATAAAAA
ATTGATGGACCTAATTAAATTaccccctctcaaaaaagtttctaaataca
TTCTTCTTTCAAATGAGCAAAAATAATTCCACTCCGGAAATTGTTGTCAC
GGGTCCTAAAGAAGGGGGCCATACTATAAGGTAGTAACTACAgtttattt
aaagttttttttaaatttgacgttTGACCTTCATGATATGCGTGACTGTC
ATGGGGTCTTGTTAAGGGTTCTGACCATCTGGGACGAGATTAtggagctt
ttacaagctctcatttgatttggttagtcgttaccagtaataaaacaatt
ttgttactttttctaaagaacgcatcattttcattacttcaaatcaccaa
ttattaaagtatcttataaaaactccatctcctCTGGACCATCTCAGCTT
GTTCTTCGACTAATCTCTAAACCCCTCTTTTGTAGCTTATCAACGTGTTA
GAGGACAACTTATTCAGTCTTGGTTATAAGGGTGTAGTGTTGATCGGTGC
AGAGGGTCATGAAATTGCATCTTACTTCAATGAGGTTTCCAAGACCACAA
GTACCTTTAAAGATCGAATTTACGTCACAATGGATAGTGTTACAATGAAA
ACGGCTCGAAACAATTTGGACTttaccaatttcaaaaacatcatttataa
caACGGAATGACTGGTTGTTCAccgagaaaaatcaaaagtgactTATTGA
CAGCTATCAAGGACAATGTTGATAAAGGTATTAAAGATTTCGATCATCAC
TTATCATTTAAAGTATTCTTTTTGGAAGCAAAAGCTTTAAACTCCCTATC
ACTTTCTCttagacccggtaggatttttccatCCAGTGGGGGTCAAAATA
ACGCACCAAAACTCGGATTGATATTccaatgttttttatggctggagatt
ttaattccattgttttcgaaccagaaaattcagtagggatggaaaaaata
gcacaatattttgcagtgaggatatCTTTATCTTATTATTTTCAACAGGG
ACAAAAATTAAAGCATAATTTTTCCCTGTGGACGATATTTCGGCAacttt
ttccagtgggaaggggtcccagatGGTGTGTGAGAAGGGgttttttctat
tatttcttTACTTATTATCTGCTATTCCTAGCATGCTAGGTCACTGTAAG
CCAAAACTTCTACAAGTACTTTTACATACTGTGAAAATCACATGCCGAAA
TTATATTCTGACCTGTGAGGACGAATAGCAATTCTATTTAGCGCGCAATA
GAAatgtaaccatgacgacaatccaagatcttgatgatatttttatttca
attacacttgggaAATTTGTCAATACTAAACATGcaaatggtaatatttg
ctcttcatctttgattcgtTCTACAGTCATAAAATTTCTACATTGGTCGC
CAGAGGTTGAtatgttctttgaaaactcaacctctgatactcagggtagt
acTTGTACTTTTGTAATTCCAGGAGTGTTCAGTGCAGCCTTTACATGGAC
TTACAATTTGAAGAGATCCATGAGAAGAGTGGCTCCTTATTTCAATGGCA
TCATAACCAATAGTCCACCGTATCTCAACAAAGTTGTCAAAGAAAAAGGT
TCGTTGATTTTTCGGCATATCCTCATCAAAGAATCTagtttttatagaaa
gtgtTATATAACTGTTTGAGTACTGCCAAGCTAAATTTCCATCATTTATG
AACGATACTTTCGATACGATACAAGACCTATTTTGCTTCAGACAAAGCCG
AGAAAACTGCGTTTGAAGTTGACGCACcgtaatttaaaaaaagccttaaa
tttcACTTTCACACAGTTCTTCAGGAGTTAAGCAAAACTTTCCATTGATT
TCACATATCCCTGGTTTCAGTGACACATTGGGGGCGACAAACAATGAAAT
ACGATTTCATTGGGTCTGATTTTTagatacaggggtgtaaaagCAGTCAA
ACAGATCATTTCCCTTTTTATTTTGTTCCACCCAGGTCTCCGTTTGGCAA
TACCAGGTGAACGTTTACCAGAAGCGACAAGTTCGATTGTTGAAGACGTT
CCAGATGATGAAATGTATGACTCTGAAGAAGATTTGACCAATGATAGTGA
AGAGCTCTAAATTCATCCATTTACCAACAATGACTCCAATGGAATCTTTA
GGAATATATATTTTACCATGAGATATAAACAATTGGACAGCCATCTtctc
tttgtctttttgtagaaagcactgctagcttcgtttcCACCTCGTTAAAA
TCATTGAAGCTTCATTGAAAAGctttaaatttatcaatttgccaGCAATG
ACTCCAATTAAACTTTTAGGAATAGATATTTTACTCTAATTATAAAATTG
CAAACAAAAGCCAACTAAGATTTTGTTCTGTTTCTCAACCCTTTTTTCCA
TTTCTAAGCTGTCGTTCAAGAAAGATTGCATTCTTCAATATCAAGAATTA
GCCCAATCATCTCAGAAAATCATCTTTTTGGCCCAGTATTGGTAGTTTAC
CAAAATACGCTTATCGACTACACGTATTTTTAtgagaatggtgttttttc
atttcatcatagatatttttagctttttaaggAAAATCATACACGTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036335XLOC_036335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057614-exon-scaffold_294-1491911889:118630..118719TCONS_00057614-exon-scaffold_294-1491911889:118630..118719Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1510915933:118630..118719TCONS_00057614-exon-scaffold_294-1510915933:118630..118719Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1575043694:118630..118719TCONS_00057614-exon-scaffold_294-1575043694:118630..118719Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1491911889:119604..119781TCONS_00057614-exon-scaffold_294-1491911889:119604..119781Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1510915933:119604..119781TCONS_00057614-exon-scaffold_294-1510915933:119604..119781Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1575043694:119604..119781TCONS_00057614-exon-scaffold_294-1575043694:119604..119781Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1491911889:121928..122025TCONS_00057614-exon-scaffold_294-1491911889:121928..122025Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1510915933:121928..122025TCONS_00057614-exon-scaffold_294-1510915933:121928..122025Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1575043694:121928..122025TCONS_00057614-exon-scaffold_294-1575043694:121928..122025Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1491911889:123765..124056TCONS_00057614-exon-scaffold_294-1491911889:123765..124056Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1510915933:123765..124056TCONS_00057614-exon-scaffold_294-1510915933:123765..124056Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1575043694:123765..124056TCONS_00057614-exon-scaffold_294-1575043694:123765..124056Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1491911889:124802..124927TCONS_00057614-exon-scaffold_294-1491911889:124802..124927Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1510915933:124802..124927TCONS_00057614-exon-scaffold_294-1510915933:124802..124927Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1575043694:124802..124927TCONS_00057614-exon-scaffold_294-1575043694:124802..124927Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1491911889:125315..125928TCONS_00057614-exon-scaffold_294-1491911889:125315..125928Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1510915933:125315..125928TCONS_00057614-exon-scaffold_294-1510915933:125315..125928Clytia hemisphaericaexon
TCONS_00057614-exon-scaffold_294-1575043694:125315..125928TCONS_00057614-exon-scaffold_294-1575043694:125315..125928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_294supercontigscaffold_294:118630..125928 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.78099	3.5872e-09	0.0349225	2.3323	2.16475	0.565805	0	0	0.169432	0	2.41501	4.44063	0	0	7.17105	6.43621	1.85298	3.33365	0	0	17.1796	15.5549	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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