TCONS_00057605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057605
Unique NameTCONS_00057605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057605 ID=TCONS_00057605|Name=TCONS_00057605|organism=Clytia hemisphaerica|type=transcript|length=572bp
TGGTGCTCTCGACAAGGCAAGTGGTGAATGAAAGCCCAACAATCCCATGC
GCGAGACGCGATGCTCTATTCGTGGTGGATAACGAACAATCCTCCTTCAG
AATAAGCAGAAATGGCACAATCCGAAAGACACAATCCCTATTGAAATCTC
TGGAGGATTTTCAGTCACAAGATGTCATCCAAGACATCATAGGGAATCAC
GAGAATATCATACTAGAAGAAAAGTTCCATCTTCCACCAGTAACCATATC
CGAAATCATGTCTCGAGTCTACGGAGCCGTCAGTGAATTAGCGGAAATCA
CAGAAGAAGTGGCAAGGATGAAAGCAAATCAAGAAACACCCCACAAGCCA
GACATCTTAACAGCTATCACGTACGGACTTGGAAACTTCCTATCAGAATC
TCCCAGCCAAGTCATATCTGCCCTCGGTAAGGGATTAACAGACACTGTAA
AGGCTGTGGGCGAAGCGAAAAGTGAACTAATTCATGCAGTCGGAGACGCA
GAAAGCGAATTAATTGACAGTGCTGCTGAAGGCATTGCCAAAATCTTCAA
CAAATGGGTCATGATGGGACTC
Run BLAST on NCBI

protein sequence of TCONS_00057605-protein

>TCONS_00057605-protein ID=TCONS_00057605-protein|Name=TCONS_00057605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
VLSTRQVVNESPTIPCARRDALFVVDNEQSSFRISRNGTIRKTQSLLKSL
EDFQSQDVIQDIIGNHENIILEEKFHLPPVTISEIMSRVYGAVSELAEIT
EEVARMKANQETPHKPDILTAITYGLGNFLSESPSQVISALGKGLTDTVK
AVGEAKSELIHAVGDAESELIDSAAEGIAKIFNKWVMMGL
Run BLAST on NCBI

transcript from alignment at scaffold_293:260848..261419

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057605 ID=TCONS_00057605|Name=TCONS_00057605|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at scaffold_293:260848..261419 (Clytia hemisphaerica)
GAGTCCCATCATGACCCATTTGTTGAAGATTTTGGCAATGCCTTCAGCAG
CACTGTCAATTAATTCGCTTTCTGCGTCTCCGACTGCATGAATTAGTTCA
CTTTTCGCTTCGCCCACAGCCTTTACAGTGTCTGTTAATCCCTTACCGAG
GGCAGATATGACTTGGCTGGGAGATTCTGATAGGAAGTTTCCAAGTCCGT
ACGTGATAGCTGTTAAGATGTCTGGCTTGTGGGGTGTTTCTTGATTTGCT
TTCATCCTTGCCACTTCTTCTGTGATTTCCGCTAATTCACTGACGGCTCC
GTAGACTCGAGACATGATTTCGGATATGGTTACTGGTGGAAGATGGAACT
TTTCTTCTAGTATGATATTCTCGTGATTCCCTATGATGTCTTGGATGACA
TCTTGTGACTGAAAATCCTCCAGAGATTTCAATAGGGATTGTGTCTTTCG
GATTGTGCCATTTCTGCTTATTCTGAAGGAGGATTGTTCGTTATCCACCA
CGAATAGAGCATCGCGTCTCGCGCATGGGATTGTTGGGCTTTCATTCACC
ACTTGCCTTGTCGAGAGCACCA

Coding sequence (CDS) from alignment at scaffold_293:260848..261419

>TCONS_00057605 ID=TCONS_00057605|Name=TCONS_00057605|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_293:260848..261419 (Clytia hemisphaerica)
GAGTCCCATCATGACCCATTTGTTGAAGATTTTGGCAATGCCTTCAGCAG
CACTGTCAATTAATTCGCTTTCTGCGTCTCCGACTGCATGAATTAGTTCA
CTTTTCGCTTCGCCCACAGCCTTTACAGTGTCTGTTAATCCCTTACCGAG
GGCAGATATGACTTGGCTGGGAGATTCTGATAGGAAGTTTCCAAGTCCGT
ACGTGATAGCTGTTAAGATGTCTGGCTTGTGGGGTGTTTCTTGATTTGCT
TTCATCCTTGCCACTTCTTCTGTGATTTCCGCTAATTCACTGACGGCTCC
GTAGACTCGAGACATGATTTCGGATATGGTTACTGGTGGAAGATGGAACT
TTTCTTCTAGTATGATATTCTCGTGATTCCCTATGATGTCTTGGATGACA
TCTTGTGACTGAAAATCCTCCAGAGATTTCAATAGGGATTGTGTCTTTCG
GATTGTGCCATTTCTGCTTATTCTGAAGGAGGATTGTTCGTTATCCACCA
CGAATAGAGCATCGCGTCTCGCGCATGGGATTGTTGGGCTTTCATTCACC
ACTTGCCTTGTCGAGAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036331XLOC_036331Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057605-exon-scaffold_293-1491911889:260848..261419TCONS_00057605-exon-scaffold_293-1491911889:260848..261419Clytia hemisphaericaexon
TCONS_00057605-exon-scaffold_293-1510915933:260848..261419TCONS_00057605-exon-scaffold_293-1510915933:260848..261419Clytia hemisphaericaexon
TCONS_00057605-exon-scaffold_293-1575043694:260848..261419TCONS_00057605-exon-scaffold_293-1575043694:260848..261419Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057605-proteinTCONS_00057605-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:260848..261419 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.488674	0.667148	2.65585	2.49007	1.05441	0.624905	3.26699	5.29359	0.905952	1.02015	1.98037	2.60363	8.38505	7.08787	3.99579	9.88644	5.13584	4.21126	0.72726	0.434872	1.70092	2.7655	1.34473	1.0188	3.56774	5.61904	0.670069	0.143023	0.216956	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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