TCONS_00057591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057591
Unique NameTCONS_00057591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057591 ID=TCONS_00057591|Name=TCONS_00057591|organism=Clytia hemisphaerica|type=transcript|length=502bp
CTCAGCAGACGGTCAATTAAGTACCTGGTCAGGCCCCCATCTTGGCCATT
TTGCTGTCCTAATGGCACCAGGCCGTATATGCGGCAAGTGGAGGAGATTG
CTGATAGTGGGATGTGCGAAAGGTATAACCACGGCcataagaaatatttc
tttcttcGTTGAACGATGCTTCTTTACTGCATATCTTCGCCGTCACTTCT
TCATTATTTTGTTGAACCTGAGTATCCTGAATCTGTCGTTGTTATCTATG
TTGACGAGAATCTttgatttctataaaaaatttCCTCTTTGCTCTTGTTT
TAAAATCGCTAACATTTGCCTTTCCTTTCTTTCAGTGTCAACTATCAATT
TTGCgattaaattatgaaaaagttttttggggTGCCGTATATTATAGATC
GAAAAAAAGTTGACTTGCTTGCTGAAGCTGGTTGATTTGCTGTAGACGTG
TATAGGCCACAGTCACTTTCGATCGGGGCTGTGGATtgcgaaatttgtcg
tt
Run BLAST on NCBI

transcript from alignment at scaffold_293:155049..155550

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057591 ID=TCONS_00057591|Name=TCONS_00057591|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at scaffold_293:155049..155550 (Clytia hemisphaerica)
aacgacaaatttcgcaATCCACAGCCCCGATCGAAAGTGACTGTGGCCTA
TACACGTCTACAGCAAATCAACCAGCTTCAGCAAGCAAGTCAACTTTTTT
TCGATCTATAATATACGGCAccccaaaaaactttttcataatttaatcGC
AAAATTGATAGTTGACACTGAAAGAAAGGAAAGGCAAATGTTAGCGATTT
TAAAACAAGAGCAAAGAGGaaattttttatagaaatcaaAGATTCTCGTC
AACATAGATAACAACGACAGATTCAGGATACTCAGGTTCAACAAAATAAT
GAAGAAGTGACGGCGAAGATATGCAGTAAAGAAGCATCGTTCAACgaaga
aagaaatatttcttatgGCCGTGGTTATACCTTTCGCACATCCCACTATC
AGCAATCTCCTCCACTTGCCGCATATACGGCCTGGTGCCATTAGGACAGC
AAAATGGCCAAGATGGGGGCCTGACCAGGTACTTAATTGACCGTCTGCTG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036317XLOC_036317Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057591-exon-scaffold_293-1491911889:155049..155550TCONS_00057591-exon-scaffold_293-1491911889:155049..155550Clytia hemisphaericaexon
TCONS_00057591-exon-scaffold_293-1510915933:155049..155550TCONS_00057591-exon-scaffold_293-1510915933:155049..155550Clytia hemisphaericaexon
TCONS_00057591-exon-scaffold_293-1575043694:155049..155550TCONS_00057591-exon-scaffold_293-1575043694:155049..155550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:155049..155550 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121084	0.236153	0.411294	0.134129	0	0	0.622693	0.582957	0.612213	0.631937	0.613374	0.645133	1.53006	1.33809	0.0687557	0	0	0	0.128715	0	0.117071	0.34262	0.555332	0.504878	2.47006	2.20447	0	0	0.403183	0.958486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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