TCONS_00057585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057585
Unique NameTCONS_00057585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057585 ID=TCONS_00057585|Name=TCONS_00057585|organism=Clytia hemisphaerica|type=transcript|length=607bp
TGCTTTGAACAGCGGTACCTCGCAAACAGATAAACAGATAGACAGAGCGC
ACAGGATGTAATTGATTTCAAAACCGCTGACCAAGAATTTATAGGGTAGA
AGATAAAATATACGGTAAAAACCTTTACCATTTGTTTCCCTTACGTAAGC
AATAAAATGCGTGTACAGGGTCATTACTGAACCTTTTTTCAGCGAAAAGA
AAGATTACGAACTTTAGTAGAATGATTTGTTGTGGTTGACATGTTTTTAT
TTGGGAGAGCTtgtgttgtttttatttcaatttataGCCTATTACAATCT
ATTGAGATTCTTTTGTATGAAAACAGTTTGAAAGCTAGAAAAATAATAAG
CTCAAAAAGTTTATTCTATCTCATTGCAGTAtagattttgtttgaaaaca
aaccaataaatattataaaattttaCATGGTGTGTATCATTTTTCCGCTA
TTTTCCCACATAATGTCTTTAAAGGACTGGGATACCTGCCTCTGACAGCG
TCCCATTTGTTCTTTACAATCAGCATTGATCAGCATTGAAAAAGGAAATT
ACGTGTTGTGCGTTTTTGGGTTTTGATGACTATAACATTTAATTTGCTCC
CCACCAC
Run BLAST on NCBI

transcript from alignment at scaffold_293:140459..141065

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057585 ID=TCONS_00057585|Name=TCONS_00057585|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at scaffold_293:140459..141065 (Clytia hemisphaerica)
GTGGTGGGGAGCAAATTAAATGTTATAGTCATCAAAACCCAAAAACGCAC
AACACGTAATTTCCTTTTTCAATGCTGATCAATGCTGATTGTAAAGAACA
AATGGGACGCTGTCAGAGGCAGGTATCCCAGTCCTTTAAAGACATTATGT
GGGAAAATAGCGGAAAAATGATACACACCATGtaaaattttataatattt
attggtttgttttcaaacaaaatctaTACTGCAATGAGATAGAATAAACT
TTTTGAGCTTATTATTTTTCTAGCTTTCAAACTGTTTTCATACAAAAGAA
TCTCAATAGATTGTAATAGGCtataaattgaaataaaaacaacacaAGCT
CTCCCAAATAAAAACATGTCAACCACAACAAATCATTCTACTAAAGTTCG
TAATCTTTCTTTTCGCTGAAAAAAGGTTCAGTAATGACCCTGTACACGCA
TTTTATTGCTTACGTAAGGGAAACAAATGGTAAAGGTTTTTACCGTATAT
TTTATCTTCTACCCTATAAATTCTTGGTCAGCGGTTTTGAAATCAATTAC
ATCCTGTGCGCTCTGTCTATCTGTTTATCTGTTTGCGAGGTACCGCTGTT
CAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036311XLOC_036311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057585-exon-scaffold_293-1491911889:140459..141065TCONS_00057585-exon-scaffold_293-1491911889:140459..141065Clytia hemisphaericaexon
TCONS_00057585-exon-scaffold_293-1510915933:140459..141065TCONS_00057585-exon-scaffold_293-1510915933:140459..141065Clytia hemisphaericaexon
TCONS_00057585-exon-scaffold_293-1575043694:140459..141065TCONS_00057585-exon-scaffold_293-1575043694:140459..141065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:140459..141065 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0869256	0.201858	0.394973	0.12021	0.0949918	0.687622	0.536453	0.375583	0.372176	0.632176	0.474934	1.00783	0.67724	0.708633	0.108639	0.736088	0.205764	1.04234	0.396629	1.29278	1.26115	0.102206	0.278761	0.191411	0.597906	0.244457	0	0.296816	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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