TCONS_00057578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057578
Unique NameTCONS_00057578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057578 ID=TCONS_00057578|Name=TCONS_00057578|organism=Clytia hemisphaerica|type=transcript|length=1346bp
ttagaacttaaatgataaatgaaacataaacaAGTGACTTGAAGttcttt
tttgcttttgttaAAATGaGTTTTTTCGGCTTCGGACAATCTGCAGAAAT
CTCCATTGAACTATCAGATTCAGATAAAAGAAAACAGGTGGAATTAAAGA
ATGAAGATGATAGAAgggaaaaacattttcttttttatgatggtgAAACT
GTAGCAGGGACTGTAAATATCAAACTGAAGAATCCTGGCAAAAAGTTGGA
ACATTATGGAATTAAAGTCGAATTCATTGGACAAATCGaattaTTTTACG
ACAGAGGGAACCACCATGAATTCACATCACTGGTCAAAGAACTCGTCAAA
CCCGGAGAAATGACCACCAACGGGTCTTATAAATTTGAATTTGTAAACGT
CGAAAAACCTTATGAATCATATACTGGCAAGGACGTCAGGTTAAGGTACT
TCTTGAGAGTGACTATTGTACGGAGACTGTCAGACATCACGAAAGAAGTC
GATATTGCAGTACACACACTATCCTCATACCCTGAAATGAATAATAGtaT
CAAAATGGAAGTTGGTATAGAAGATTGTCTCCACATAGAATTCGAATATA
ATAAATCAAAATATCACTTGAAAGATGTGATTGTtggtaaaatttacttt
ttattgGTCAGAATCAAAATCAGACATATGGAACTTGCCATCATCAAACG
AGAGACTGCTGGAACAGGTCCAAACAGTTCACCAGACAACGAAACGATCG
CAAAATACGAAATCATGGACGGAGCTCCCGTTAGAGGTGAATCCATTCCA
ATCCGACTGTTTTTATCGGGTTACGAACTAACGCCCACCATGCGTGATAT
CAACAAGAAATTCTCTGTCAGATATTTCCTCAACCTCGTCTTAGTGgatg
aagaagaaagaagatatTTCAAACAACAGGAAATCACATTATGGCGTAAA
GGAGACATCCCCAAAAGGACTGGAATGAGTGGGTTAGAAACCTTTCAGAA
GCCTGGTACAGAATGAATGGATGGATgagtgaatgaatgaatgaatgaat
tcctttttcttcttttcgtcTCCAACATCAACATTACTTTCTTACAATTA
CACCTAAGATATACTATATAGTAATTATTATCATTAAATAATATCATGGA
TTATATTTTCTagtcgtttttgttttttacattTCTATTTACCTTATGCA
TTACGCTTGAGCTCTTCCCAAAAAAGGAAGCAATCTGTTTTGCATTTTac
acccccgggggggggcactgggtttgcagactgacggtatgtgcgggcca
aaaattggcttttaaaattgcacccttacagtgcagcaaaaatcag
Run BLAST on NCBI

transcript from alignment at scaffold_293:190168..201371-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057578 ID=TCONS_00057578|Name=TCONS_00057578|organism=Clytia hemisphaerica|type=transcript|length=11204bp|location=Sequence derived from alignment at scaffold_293:190168..201371- (Clytia hemisphaerica)
TTAGAACTTAAATGATAAATGAAACATAAACAAGTGACTTGAAGTTCTTT
TTTGCTTTTGTTAAAATGGTAAGTATATTTTGATTCGATTGGTTAATATC
TGGTGATATTTGAACTAACTACTGTATATCGTTGGTAATTCTCTCAAAAG
AGACTCTAGTTGACATTGTCCATAGAATTTCTCAAAAATTGTTGATGTTA
ATTTTAAACCATTTAATACCAATTCTAAATTAAGCCTTTCAGTCTTTCCC
ACTCTTCTTTGTTGGTAGCATTGTTCTGTAACTTATTTTTTATAGGATTT
TCCTTTGTCTGTTAGAAAATATAAACTAGTTTAAATTTTTGCTATTTTTC
AAAGAACTTTTTTAAATAGACAATTGACCAAATTCAAACTTTGCTAACAA
TGTAAGAAATATATCTTTTGCATGTCAACCCATGTATGATTGCATGTTTT
TCTTTTGTAGAGTTTTTTCGGCTTCGGACAATCTGCAGAAATCTCCATTG
AACTATCAGATTCAGATAAAAGAAAACAGGTGGAATTAAAGAATGAAGAT
GATAGAAGGGAAAAACATTTTCTTTTTTATGATGGTGAAACTGTAGCAGG
GACTGTGAGTAGAAGTTCTTATGATCTACATGAATTTTAGAGAGGTGGTC
AGATCAAGTCAGGGTTAGGGTTCTGAGATTGCATTTCAACTGAACCTCCC
CCCAAGTCTTTTGTATTTTCTGCAAATAAATTTCCCATCCTAATATAGCT
GAATTAAGCCGTATAAACTATTGACCCATTTTTTTCATTTTGATATTCCT
TCAAATCAGAGTGCATGCTATTCTTTCAGAGTTAAATTTTCGTACTGAGC
TAACCTGGTAGCAAGTAAGATTTCAGAAAAGTATCCTTAAAATGTTTTCA
TTTGTATTAGCAATGACTGCAAACCAGTTTAAATCGCTCACTTGAGTTGC
CTGTTTTGTGTTGTCCATATCCTTCTAACGTCTTGTCAAATGAAAGACCT
CATGCAACAGACAAATAGGAGTAACACTCATGCCATTCTGCCTNACGTCT
TGTCAAATGAAGGTGTGTAAGGCAATTAGTAACACTCATGCCATTCCGCC
AATTTTATCTCAGGTAAATATCAAACTGAAGAATCCTGGCAAAAAGTTGG
AACATTATGGAATTAAAGTCGAATTCATTGGACAAATCGGTAAGGAAGAT
TTCTTTGTCTTTACATATTTTCTAATTGACGACATTTGCCAGAACTCTCT
ATGCTTTTTTAAAGGAAAATTTGGGTATTGTGTATTTTTCACAAGTCTAC
TTCAATTTCAATCCAGGTACTTTTCTTTTACCAAGAAAATTTCGTTAGCA
TTGTGTTTTTGTCAAAAAGAATGCTGAGAGGAAACATAATGTCAGCCCCT
CCAGAAATCTGAAGGGCATCTAGGCCAGGTTAGGGGTCGGGGGCTAATAT
TTTGCGATTCTTTGGGGTTACCTATTCATTGGGGGTAGCTGTCTTGATTG
AGGCTCTGGGGGCTGTGTATATTTTCCAAGTTGAATATTTCAAAATATAT
CAAATTATTAGAATTTTTTACCCCAGCACCCAGTTTCCCAATCAATTTTG
ATTCTCTTTCTTTTGTTTCCCATCATGTCATCTTTCCCTATATATTTCAA
ATGTGATTGTTTTGATTTACAGCCGTTATCTTTAGCATAAACAAAGCATC
GCTTCCCACGCTAGCATAGAGAAGCTAAAACCTCAGGATTGGGAAATGGG
GTACCTAACTCAAAGCAATTTCTCAAGGGGACCTAACTCGTTGGGGGCAC
CATGCTTCAATGAGGGCACCTGGAAAATGGGCTGAAACCATGAGAAAAGG
GCTTAGGACTTCCTCTGACAGTTCCCTATGCCAAGTCATTGCTTTCTTCT
TATAAAAGACACTTGATTTAAGACTCTTAAAGTGCTTTTAAGTGAGCGAC
TTTACTAGAAGGCAACTAAATTATCCTCTTCTGATAGCTGTCTGGCTTGA
AAACAAGCGAAGGTTTACTCTCTTTTTTCAATTACTATATCTTGACTTTC
TCTTGAATCAATTGCTCAAGAGCACTAAGCAAAGAGATATGAAACGTACT
CTTTTTCAAGTTCTTGTTAAGACTCGGTCAGGGATTGAAGGTAAGAACTT
GTGCACAAGAGGTCAATGCTACTGCAGCGTAAAACATTCTGTCTCAATAT
TCAATTTTCTTTTTCAGAATTATTTTACGACAGAGGGAACCACCATGAAT
TCACATCACTGGTCAAAGAACTCGTCAAACCCGGAGAAATGACCACCAAC
GGGTCTTATAAATTTGAATTTGTAAACGTCGAAAAACCTTATGAATCATA
TACTGGCAAGGACGTCAGGTTAAGGTAGGTTTTTTATGTTTGGGATTCAA
CATGTTTTACTAACTAATTTGTCAAAGTATCGGCAGGGAGCCCTGATATA
ATTTTGCTCCAGATTTAAATAAAATATTCTGCTGAAGTGAAACATTTTCC
CAGTATCTTAAACTAAATTTTTTGTTCTGCTTTTTTTGTATGAAGAATTA
AAAAAAATCATTCAGCCTGTATTGGTTTAAAGTCATGTTAATCACACACT
GGACTGCACTGAAAATGATGCTGTAAGGTTAAGAAACTTTAAACCCATAA
ATTAGAGCAGAATATAGCTTGCACCATAACTAAGACTTGATTCTCCATGA
TTTCGTATCTCACTTTGAGACTCTTTGGTTTCAGCTAAAAGCTTCGGCCG
GGAAGCTCAGTAAGTAGAGCATTCGCCTTGCAAACAAAGGGTTATGGATT
CGATCCTCGGTTACCGCCAACTCAGCGATTGAGTAGCATAGATTAGGTTA
AGTAACTGAGAACCTCAGCATCAAATTTCCCAGGAGCAAATAGAAAGGGA
TTAGACGCCCTCACTTCCGGCTCTGCCGACTGCCACCAGATGAGTATACT
TCCTTGCTTACTTTAAGCAAAGTAGTATGACGTAATCTCTTCAAAGAAAT
GGCATGGTCTATTAGATCATCTTTTGAAATCTACGTATTAACACAGACTA
TTCATTTCTTTCATAGGTACTTCTTGAGAGTGACTATTGTACGGAGACTG
TCAGACATCACGAAAGAAGTCGATATTGCAGTACACACACTATCCTCATA
CCCTGAAATGAATAATAGGTACCTATCACAGATATCACATTCCTTTACAC
TAGATATGCTAACTGCCTACAGATTTCCCGGGGAAGGATATCCAGTTTTG
AAGTCGACTAGTCCGCCATGCTGTTTTCTGTTTTACACTAGATTTTTGAA
CGTTCGAATTTCAAAACATTCGAATCCCGCTGTTGACAACCAAAACAGAA
TACAAGATGGTGGACTAGTTAGCTCTTAAAACTGGACACGCTGCCTTTGA
TATTGGAGGCCCGATCCAGTCAAGTAGTTAAAGATCAGTGGTACCTATCC
GATTCTTTATAAAGCAGGGGGGATACAGAGGCAGGGTACCAACCCAAAGG
GTACTAACTTGATTTTTCACTCAATTTCTTTTTAGTACCACCCACCCATA
TTTAGTACCGGGTACTACTTCATTTTTTCTGTAAAAAATAGAGACACCAC
CCCCTAAAATCTTATATTTTACAGATTAGATCAAAAGAGAGGGTATTATG
TTAGTTTTTATGACTGAAATGAACAGATAATTCAAACAAACTGTCATTGA
TTAAGTCAGAGGCTTTTGTCCTTTGATTTTAATAACACACTTCTTGACCA
TTTCGGAAGTTTTGTCTTCACAAAAATCAAAAAATTTCTCAAAAGAGTAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAAAAAAAAGTTTCTCA
ATTAAAAAAAATTTCAAATCAAAAAAATAATATTTGAAAAAAGTCAAAAT
ATTACAAAAGACTACTTTTTTTTATTGAAAAAGGAGGAAAACTCTGTGAA
AAAGTACCCAAATAGTACCCTGTACATGCTAGAAGAGTAAAAAATACACA
CCCCCACCCCTAAAGTAGTACCGGGTACTAATTTTTTTGAAATGCAAAAA
TAGACACCACCACCCGGCTATGGTATGGGTCAGTACCCTGCCTTTTTCCC
CCCCCCCCCTGTATAAAGCCAGGTTCTATTACCTACTTTCAAATTTTGTC
TGCTTTAACTCATGATAAAGGGAGAGCGGCTAGCTGCTTAAAAATGGTTG
TTGAAAATTCTGGCAAATTGGGGATTTTTTCTTCAGAGTTCATGATTCAA
GCTAGCATTTAACTGCTGTTTAAATGCATTTATCCTCTAATTAATATTCG
AACTGAGCGTTTCCGGAATAATCTAGATGATCGTATAAGAGAACTTCCTT
CAGTATCAACCTTCAAAAAGCAATCTTCTACTTTCTAAGGCCCAAACCTT
CTCCTGTTTTCGGAGCTCGTGACAATCAGGAAGTGGTCTTTATCNAGGCC
CAAACCTTCTCCTGTTTTCGGAGCTCGTGACAATCAGGGAGTGGTCTTTA
TCAACCGTCTCCGTTTAGGTTTCAGTCACCTCAATGAACATAAATTTAGG
CATGGTTTCCGTGACACCTTAGATCCTTTTTGTGCTTGCAGGTTAAATTC
CATTGAAAACTCTCAGCATTTTTTCTTGCACTGCTCTATATACTCTTATG
CAAGAAATCTTTTATTCAACAGACTTCAGACTTTAGACTTACATATTTAT
CCACTAAGCCCTCCTAACCTTTTCAATCTTTTGTTGTATGGCGATTCTTG
CTTAGCTTTCGACATTGATAATGCAATACTTAATTTTACCATTGAATTTA
TTCTTGCATCAGAAAGGTTTAGTGGTGCCTTATTCTAACTCATATTCCTC
TTCAAAGCTGATCTCTCTTGTTGTTGTTTTTTCAAATTTTGATTTACTGT
AGTCTAGTACCCTTGGCGATATCGCATTAGTGTCTAGCGGGGGCATTGAC
TGTATTTTTTTTCTATGTTTGTAATCGTATGTACAATGTACTTTTTGAAT
TATAAAGAAAAAGGAAAAAACATTAACTGCTAAAAGTTGTTTCACTTAGT
GGTAGGATTCGTACGGAATCACACATGAGTTTCTTTTAAAAGTTTAATAT
ATTTGATGTCAATCTCGCGAGGGAGGTCCGCTGCTAAGGTCTGGCAAAAT
TTAACATCACAGCAGATCACAGGCAAAATTGTAGTGCCAAAAGGTGAGTA
AAAACTGGCGATTGATATCACGGATTCAAAAATTTGGTTTAGAATGGGTA
TATAGGACATTGAATTAAAGTAAATAGTCATTTCCTTAGCATCATCTGCT
TTATCTTCTTCTTCTTTTTTCAGTATCAAAATGGAAGTTGGTATAGAAGA
TTGTCTCCACATAGAATTCGAATATAATAAATCAAAGTAAGCCATCTGAA
AAAGTTTCTACCAAGTTTATACGCATTATTCCAGAAAAATATTTTACTTA
CCCCTCATATTTAGATCATATTTTCCTAGAAAATCTAGTGGGTCTGAATT
TGCAAGATAAAATCCAAGAGAGGTCTCCAAGGGAGGTCTCTGAAATCTAG
ACGGAATCCAAGTGAGGTCTCTGAAATCTAGACAAAATCCAAGGGAAGTC
TCTGAGATCTAGACGAAATCCAAGAGAAGTCTCTGAAATCAGACGAAATC
CAAGGGAAATCTCTGAAATCTGGTCGAAATCCAAGGGAGGTCTCTGAAAT
CAGACGAAATCCAAGGGAAGTCTCTGAAATCTAGACGAAATCCAAGGGAA
GTCTCTGAAATCAGACGAAATCCAAGGGAAGTCTCTGAAATCTAGACGAA
ATCCAAGAGAAGTCTCTGAAATCTAGACGAAATCCAAGGGAGGTCTCTGA
AATCTGGTCGAAATCCAAGGGAGGTCTCTGAAATCTAGACGAAATACAAG
GGAAGTCTCTGAAATATAGACGAAATCCAAGGGAGTACAAAAGAAATTTG
GACAATAAATTCAGGGGTTGGGAAATTTGCAAAAGTTCAGGGGGGGTTGA
CTATTGTGCTATCAACCAGTAAAAAGATATCATTTTCTTCTGTACCAATC
GCTCATAGTGCTGAGCGAAGTTCTGAATCCCTTGACATTCTTTATATACA
CGATTTGACGGAAAAAGATGGAAATATGAATCATTCGACAACCTACAACC
ATACGAGTACGCAGCCTCAGTTTGCAACAAAGTTCTTTCGCTTCCCATTA
TAGATATCACTTGAAAGATGTGATTGTTGGTAAAATTTACTTTTTATTGG
TCAGAATCAAAATCAGACATATGGAACTTGCCATCATCAAACGAGAGACT
GCTGGAACAGGTAACATTTCATTCTAAACCAGCACTAAATTGATTCGTCT
GACTAATAAAGGCTTAGACACTGAATGTTTCTTAATTTCACAGTTGTTGA
GTTGTATTTTATAGGAGAATGATGCCTTCCCTTCACACTACCCCTCACAC
TGGGTCCCTGACATCTCTACCCATAATCAAAGAGTAACCACTTATCTCAA
TTTCTTTCTTGATTGTTTCTAGGTCCAAACAGTTCACCAGACAACGAAAC
GATCGCAAAATACGAAATCATGGACGGAGCTCCCGTTAGAGGTATGAGAT
CTTCGTCTTTCTTAAATAGAATATTTCGTTCATCTAACGTACAAGTATGG
ACGTTGAGACAAGTTTGTCTGCCAGCTTGGTCGCCTGTACTTATCTTGCC
AATAACCCAGAATTCACTGGGGTGTTTCCGACGATTGTCACCCTCTATGA
TTTTGAGATGATAATGTTGCCTTGAAGATAATGTTTCCAAAATATGCCAA
TTTTGAATGGGTTCTCTTTTTGCTTTGATCTAACCTTTAGTATTCTAAGG
ACTTTCGATGCGCAAGCAAAAACATTAACCGGCGTTTGCGATGACGGGGA
CCGTCTAGAAAGAGACATTATATAAATAGAATTATCACATAGGACAAAAG
TCGAAATTTCACTTTCAAACTATGGCACCAAAAGTTGAATTGGGTGGTGG
ACTTGGTTTAACTTCAATAAGATCTAGTGAGAACTTCTGATAGATGTGAA
CCGGCCCTTGCAGTGTTAGGGTCTGATGGATCTGTTTATCCACTCGTGTG
TTCTTGTCATGATGTTTTTTTCCAGGAATCTTACATCAAATTTGAAAGGG
TGTAAAAACATGGAGCAGGGAGAGGTTGATATGACTTATGGTCTTATCTA
ATTCTTTTTTCTTCTCTGCACAGGTGAATCCATTCCAATCCGACTGTTTT
TATCGGGTTACGAACTAACGCCCACCATGCGTGATATCAACAAGAAATTC
TCTGTCAGATATTTCCTCAACCTCGTCTTAGTGGATGAAGAAGAAAGAAG
ATATTTCAAACAACAGGTAACTACGCATGCGTTCTTCCCCATTCCCCCTC
TACCTCTCTTGCACCACTCCCTTAAGTTTTCTGTCCATCCTTCAAACAAC
AGGTAACTACGCATGCGTTCTTCCCCATTCCCCCTCCCTCTCTTGCACCA
CTCCCTTAAGTGTTCTGTCCATCCTTCAAACAACAGGTAACTACGCATGC
GTTCTCCCCATCCCCCTCCCTCTCTTGCACCACTTCCTTAAGTTTTCTGT
CCATCCTTCAAACAACAGGTAACTACGCATGCGTCCCCCCCCATCCCCTC
TCTCTCTCTTGCACCACTTCCTTAAGTTTTCTGTCCATCCTTCAAACAAC
AGGTAACTACGCATGCGTCCCCCCCCATCCCCTCTCTCTCTCTTGCACCA
CTTCCTTAAGCTTTCTGTCCATCCTTCAAACAACAGGTAACTACGCATGC
GTTCTTCCTCATTCCCTCTCTCTCTCTTGCACCACTCCCTTAAGTTTTCT
GTCCATCCTTCAAACAACAGGTAACTACGCATGCGTCCCCCCCCATCCCC
TCTCTCTCTCTTGCACCACTTCCTTAAGTTTTCTGTCCATCCTTCAAACA
ACAGGTAACTACGCATGCGTTCTCCCCATCCCCTCTCCCTCTCTTGCACC
ACTCCCTTAAGTTTTCTATCCATCCTTCAAACAACAGGTAACTACGCATG
CGTTCTTCCTCATTCCCCTCTTATTCTTGCACCACTCTCCTAAGTTTTCT
GTCCATCCTTCAAACAACAGGTAACTACGCATGCGTCCCCCCCCCATCCC
CTCTCTCTCTCTTGCACCACTTCCTTAAGCTTTCTGTCCATCCTTCAAAC
AACAGGTAACTACGCATGCGTCCCCCCCCATCCCCTCTCTCTCTCTTGCA
CCACTTCCTTAAGTTTTCTGTCCATCCTTCAAACAACAGGTAACTACGCA
TGCGTTCTTCCTCATTCCCTCTCTCTCTCTTGCACCACTCCCTTAAGTGT
TCTGTCCATCCTTCAAACAACAGGTAACTACGCATGCGTTCTTCCTCATT
CCCTCTCTCTCTCTTGCACCACTCCCTTAAGTGTTCTGTCCATCCTTCAA
ACAACAGGTAACTACGCATGCGTTCTTCCTCATTCCCTCTCTCTCTCTTG
CACCACTCCCTTAAGTGTTCTGTCCATCCTTCAAACAACAGGTAACCACG
CATGCGTTCTCCCCATCCCCTCTCCCTCTCTTGCACCACTTCCTTAAGTT
TTCTGTCCATCCTTCAAACAACAGGTAACTGCGCATGCGTTCTCACCATC
CCCTCTCCCTCTCATGCACCACTTCCTTAAGTTTTCTATCCATCCTTCAA
ACAACAGGTAACTGCGCATGCGTTCTCACCATCCCCTCTCCCTCTCTTGC
ACCACTTCCTTAAGTTTTCTGTCCATCCTTCAAACAACAGGTAACTACGC
GTGCGTTCTCACCATCCCCTCTCCCTCTCTTGCACCACTTCCTTAAGTTT
TCTGTCCATCCTTCAAACAACAGGTAACTACGCGTGCGTTCTCCCCATCC
CCTCTCCCTCTCTTGCACCACTTCCTTAAGTTTTCTATCCATCCTTCAAA
CAACAGGTAACTACGCATGCGTTCTCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNACCACTTCCTTAAGTTTTCTGTCCATCCTTCAAACAA
CAGGTAACTACGCGTGCGTTCTCCCCATCCCCTCTCCCTCTCTTGCACCA
CTTCCTTAAGTTTTCTATCCATCCTTCAAACAACAGGTAACTACGCATGC
GTCCCCCCCCCATCCCCTCTCCCTCTCTTGCACCACTTCCTTAAGTTTTC
TGTCCATCCTTCAAACAACAGGTAACTGCGCATGCGTTCTCCCCATCCCC
TCTCCCTCTCTTGCACCACTCCCTTAAGTGTTCTATCCGTTCTTGAACAA
ATCATTAGGCTTTTTATGGTCTTTTTTTGAACTTTTTTTCCTTCGAATAC
AGTCGTTTCTTTCGTTAGCTGGCATCATTGGTAGTTAAAGGAAATAATTT
AACGTATTTCATATGGTTTGCTTACGCAGTATTTTTTAGGAAACATTCTT
TTTGCCCTGCAAAAATGTTGAGAAATTCTTTTGTTTATTCTGCTTTGTTA
GCTTGAGACGCGCCTCCTTTACACACCATAAAAATTATCTTTAGCAAGAA
AAAGGGAAATAGATTTAACCAATACTAATATTCTTCAAAGTCCATTGATA
GCCTACTTTTAATTTTCTTCTTTCCTCACTCACCCAGGAAATCACATTAT
GGCGTAAAGGAGACATCCCCAAAAGGACTGGAATGAGTGGGTTAGAAACC
TTTCAGAAGCCTGGTACAGAATGAATGGATGGATGAGTGAATGAATGAAT
GAATGAATTCCTTTTTCTTCTTTTCGTCTCCAACATCAACATTACTTTCT
TACAATTACACCTAAGATATACTATATAGTAATTATTATCATTAAATAAT
ATCATGGATTATATTTTCTAGTCGTTTTTGTTTTTTACATTTCTATTTAC
CTTATGCATTACGCTTGAGCTCTTCCCAAAAAAGGAAGCAATCTGTTTTG
CATTTTACACCCCCGGGGGGGGGCACTGGGTTTGCAGACTGACGGTATGT
GCGGGCCAAAAATTGGCTTTTAAAATTGCACCCTTACAGTGCAGCAAAAA
TCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036306XLOC_036306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057578-exon-scaffold_293-1575043694:201304..201371TCONS_00057578-exon-scaffold_293-1575043694:201304..201371Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:200768..200911TCONS_00057578-exon-scaffold_293-1575043694:200768..200911Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:200183..200258TCONS_00057578-exon-scaffold_293-1575043694:200183..200258Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:198998..199154TCONS_00057578-exon-scaffold_293-1575043694:198998..199154Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:198204..198305TCONS_00057578-exon-scaffold_293-1575043694:198204..198305Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:195886..195948TCONS_00057578-exon-scaffold_293-1575043694:195886..195948Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:194962..195068TCONS_00057578-exon-scaffold_293-1575043694:194962..195068Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:194681..194749TCONS_00057578-exon-scaffold_293-1575043694:194681..194749Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:193906..194048TCONS_00057578-exon-scaffold_293-1575043694:193906..194048Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1575043694:190168..190584TCONS_00057578-exon-scaffold_293-1575043694:190168..190584Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:201304..201371TCONS_00057578-exon-scaffold_293-1510915933:201304..201371Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:200768..200911TCONS_00057578-exon-scaffold_293-1510915933:200768..200911Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:200183..200258TCONS_00057578-exon-scaffold_293-1510915933:200183..200258Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:198998..199154TCONS_00057578-exon-scaffold_293-1510915933:198998..199154Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:198204..198305TCONS_00057578-exon-scaffold_293-1510915933:198204..198305Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:195886..195948TCONS_00057578-exon-scaffold_293-1510915933:195886..195948Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:194962..195068TCONS_00057578-exon-scaffold_293-1510915933:194962..195068Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:194681..194749TCONS_00057578-exon-scaffold_293-1510915933:194681..194749Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:193906..194048TCONS_00057578-exon-scaffold_293-1510915933:193906..194048Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1510915933:190168..190584TCONS_00057578-exon-scaffold_293-1510915933:190168..190584Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:201304..201371TCONS_00057578-exon-scaffold_293-1491911889:201304..201371Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:200768..200911TCONS_00057578-exon-scaffold_293-1491911889:200768..200911Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:200183..200258TCONS_00057578-exon-scaffold_293-1491911889:200183..200258Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:198998..199154TCONS_00057578-exon-scaffold_293-1491911889:198998..199154Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:198204..198305TCONS_00057578-exon-scaffold_293-1491911889:198204..198305Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:195886..195948TCONS_00057578-exon-scaffold_293-1491911889:195886..195948Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:194962..195068TCONS_00057578-exon-scaffold_293-1491911889:194962..195068Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:194681..194749TCONS_00057578-exon-scaffold_293-1491911889:194681..194749Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:193906..194048TCONS_00057578-exon-scaffold_293-1491911889:193906..194048Clytia hemisphaericaexon
TCONS_00057578-exon-scaffold_293-1491911889:190168..190584TCONS_00057578-exon-scaffold_293-1491911889:190168..190584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:190168..201371 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.8063	73.9455	64.7642	60.7375	112.694	71.5143	88.6382	81.694	55.8648	70.8248	60.2597	52.1303	53.2266	47.1774	56.5896	69.3776	61.4321	51.2561	49.9101	56.32	46.4845	44.3573	56.9145	52.4845	29.8535	33.2957	65.8668	50.3832	70.4369	56.4902
Blast
[Close]
BLAST of TCONS_00057578 vs. Swiss-Prot (Human)
Match: VP26B (Vacuolar protein sorting-associated protein 26B OS=Homo sapiens GN=VPS26B PE=1 SV=2)

HSP 1 Score: 486.493 bits (1251), Expect = 1.839e-170
Identity = 226/296 (76.35%), Postives = 267/296 (90.20%), Query Frame = 3 
Query:   84 GQSAEISIELSDSDKRKQVELKNEDDRREKHFLFYDGETVAGTVNIKLKNPGKKLEHYGIKVEFIGQIELFYDRGNHHEFTSLVKELVKPGEMTTNGSYKFEFVNVEKPYESYTGKDVRLRYFLRVTIVRRLSDITKEVDIAVHTLSSYPEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIRHMELAIIKRETAGTGPNSSPDNETIAKYEIMDGAPVRGESIPIRLFLSGYELTPTMRDINKKFSVRYFLNLVLVDEEERRYFKQQEITLWRKGDIPKRT 971
            GQS E+ I L+D++ RK+ E K ED ++EK+FLFYDGETV+G V++ LKNP K+LEH GIK+EFIGQIEL+YDRGNHHEF SLVK+L +PGE+T + ++ FEF +VEKPYESYTG++V+LRYFLR TI RRL+D+ KE+DI VHTLS+YPE+N+SIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKI+HME+ IIKRET GTGPN   +N+TIAKYEIMDGAPVRGESIPIRLFL+GYELTPTMRDINKKFSVRY+LNLVL+DEEERRYFKQQE+ LWRKGDI +++
Sbjct:    7 GQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKRLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKS 302
The following BLAST results are available for this feature:
BLAST of TCONS_00057578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP26B1.839e-17076.35Vacuolar protein sorting-associated protein 26B OS... [more]
back to top