TCONS_00057561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057561
Unique NameTCONS_00057561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057561 ID=TCONS_00057561|Name=TCONS_00057561|organism=Clytia hemisphaerica|type=transcript|length=600bp
CTCCCATTGAAAACTCCATTCAAACCACTGTCGCAGACTCTAGACTGGAA
TATGGTATCTTTGAAACCAGAAGAATGGATTAACATACCGATGACCTGAA
AAAGATTTAGCAAAACATAAACTACATTCACAGCAAAAAGACATGAGATA
TATATTACAAACTACATAAGATATTATACAAGAAAAACTCTATCGCTTGA
CgaaaatatcatcaaaaataATCTTTGTAATTTCCTAGCAATATGCTAAA
TTAAGCAACTTTTTATTACCTGGAAGTTTTCTTTCATGAAATGGAAATCA
CCAAGATGGATCACCACATTGCTCAGAGAATCTTGATTTGACCACAAAAA
CTTGAATGCGTTGATAGCAGCACCGACATCCAACGTTATGTTAGTATATG
GCATGTTGACTGAGGCTGCCAAAGATTGGAGATAGGTCATATACTTTGAG
ATGGTAGTGAACTCGGTTACTTTGGTAGTGATTGGAGGGAGGTATGTTTC
GACGGTCTTTTTGAAATTCCGAGGTCGAGGTTTATTTCCAAACAATCTCC
AGCCAGTGAAAATTGGAACAGCTTGATCGTAATGGTTAACTTTCCTGAAG
Run BLAST on NCBI

protein sequence of TCONS_00057561-protein

>TCONS_00057561-protein ID=TCONS_00057561-protein|Name=TCONS_00057561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
FRKVNHYDQAVPIFTGWRLFGNKPRPRNFKKTVETYLPPITTKVTEFTTI
SKYMTYLQSLAASVNMPYTNITLDVGAAINAFKFLWSNQDSLSNVVIHLG
DFHFMKENFQVIKSCLI
Run BLAST on NCBI

transcript from alignment at scaffold_292:151178..151777

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057561 ID=TCONS_00057561|Name=TCONS_00057561|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at scaffold_292:151178..151777 (Clytia hemisphaerica)
CTTCAGGAAAGTTAACCATTACGATCAAGCTGTTCCAATTTTCACTGGCT
GGAGATTGTTTGGAAATAAACCTCGACCTCGGAATTTCAAAAAGACCGTC
GAAACATACCTCCCTCCAATCACTACCAAAGTAACCGAGTTCACTACCAT
CTCAAAGTATATGACCTATCTCCAATCTTTGGCAGCCTCAGTCAACATGC
CATATACTAACATAACGTTGGATGTCGGTGCTGCTATCAACGCATTCAAG
TTTTTGTGGTCAAATCAAGATTCTCTGAGCAATGTGGTGATCCATCTTGG
TGATTTCCATTTCATGAAAGAAAACTTCCAGGTAATAAAAAGTTGCTTAA
TTTAGCATATTGCTAGGAAATTACAAAGATtatttttgatgatattttcG
TCAAGCGATAGAGTTTTTCTTGTATAATATCTTATGTAGTTTGTAATATA
TATCTCATGTCTTTTTGCTGTGAATGTAGTTTATGTTTTGCTAAATCTTT
TTCAGGTCATCGGTATGTTAATCCATTCTTCTGGTTTCAAAGATACCATA
TTCCAGTCTAGAGTCTGCGACAGTGGTTTGAATGGAGTTTTCAATGGGAG

Coding sequence (CDS) from alignment at scaffold_292:151178..151777

>TCONS_00057561 ID=TCONS_00057561|Name=TCONS_00057561|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_292:151178..151777 (Clytia hemisphaerica)
TTCAGGAAAGTTAACCATTACGATCAAGCTGTTCCAATTTTCACTGGCTG
GAGATTGTTTGGAAATAAACCTCGACCTCGGAATTTCAAAAAGACCGTCG
AAACATACCTCCCTCCAATCACTACCAAAGTAACCGAGTTCACTACCATC
TCAAAGTATATGACCTATCTCCAATCTTTGGCAGCCTCAGTCAACATGCC
ATATACTAACATAACGTTGGATGTCGGTGCTGCTATCAACGCATTCAAGT
TTTTGTGGTCAAATCAAGATTCTCTGAGCAATGTGGTGATCCATCTTGGT
GATTTCCATTTCATGAAAGAAAACTTCCAGGTAATAAAAAGTTGCTTAAT
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036298XLOC_036298Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057561-proteinTCONS_00057561-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057561-exon-scaffold_292-1491911889:151178..151777TCONS_00057561-exon-scaffold_292-1491911889:151178..151777Clytia hemisphaericaexon
TCONS_00057561-exon-scaffold_292-1510915933:151178..151777TCONS_00057561-exon-scaffold_292-1510915933:151178..151777Clytia hemisphaericaexon
TCONS_00057561-exon-scaffold_292-1575043694:151178..151777TCONS_00057561-exon-scaffold_292-1575043694:151178..151777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_292supercontigscaffold_292:151178..151777 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.244725	0.193385	0.349966	0.655268	0.305846	0.757678	0.551566	0	0.301728	0.125339	0	0	0	0	0	0	0	0	0	0	0	0.260833	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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