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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057557 ID=TCONS_00057557|Name=TCONS_00057557|organism=Clytia hemisphaerica|type=transcript|length=2119bp
NNGACTTGCTAGCGTCGCCAAAATCGATGGTTTCCAGGTCGAGAGAAATT
GCATCTTCAGGAATGATAGCACGTTGATATTTGAGGTTGTTGATTTCCTT
CATCAGGTCGAAGTGTGATTCCCACAATGGTCTTAGTTCATCTGGGATCT
TGTCATCCCAGTCGAGTTTTCGGTGAACCAGTTCTTGTAGATCCAACTTC
ATAGCAGCAACGATTGGGGTGACTTTTCCTGTAAGATCAAAAATTTCTGC
TACTTTCGATGCGCAGTGTCTTCGAGTGAGTTTGGCAGGAATGATGTTGA
CAGAGTTTGATGGCTTTTTACCACGACATTTCTTCGCAAAGTTGAGTTGA
CTGATATTGAGTGATAACAAATCGTCTTTAGGAAACCATCGCATTCCACC
AACGTGAATCGTCTCTCCATCGTCTGTGAGATTCTCCAACGGTTTTTCTC
CAGAAAAAGAAACACCTTTCAGTTGGAATCCTCCTTTGTTGATGTTGAGT
TCGATGTCGTCTGCCAAAATGTGGGCTTGTTGGATTGATTGAGCACCAGT
GATACAGTCATCTACGTAGACGTCATTCTGTATCACTTCGTTGGCTTTTG
GATATTGATCTTTTGATAATTCGGCTACCTTTCGTAATGCATACTCAGAT
TGGTTTCCACTCGATCGAACGCCATATATAAgtgtttttatgactttttc
ttTGGGTATCTTCGAAGGATTAAGGTTTTCTTCCCAAATGTATCGTTGGT
AGCACCAGTCTGATTGGTTGAGTCTGACTGTATTGTACGTTTTTCTCACG
TTGGTATGAACTCCAACTCGGTGCATTGACCACCGGATGATGATTTCTTG
GAGTTTATTTAGATTGTTACGACCCTTGGCCAAGAGATCATTAAGACTAT
AACCAGAGGACGTAGCTTGAGAGGCGTCAAATACAATTTGGCAAGGTGTG
CTTACCGAATTCCCCTTCCACACAGCACGCCAAGGAATGAAGTTCTGGAT
TGGATGGTTTTGCATTGAGTCTTGAACGTCTTGTGGGAGGTTTTCAACGT
ATTCGACATAATTGAGTTGCTGAAGCTTCGATTCCGAATCCAAAATGTCT
TGCTTGTCTTTGATATTGGATGGGTTGTTCAGCTTTCTGAGTTGTTGCTT
GAAGGTTTTCATTGCACGATCTTTTTTTGGCAGTAAGGCGATTTGGGCTT
GAGATGAATGGAAGTGAGGCTGTTGTAGTTGATGTTTCCAGATTGATGGT
GACAGATGCATTGATTAGGCTTTGCTCCACTTCCTCCCTCAAGCTGGTTG
TTTGGTATTGGTCGAAGTGCTTGCAATCCTTGCACGTTTTGCAAGATGGA
CATCTGTAGGACACTTCACAACCAGTAGACTCGACTTGTTCGAACAGTCG
CTGTTGATGTGTGAGATGGACATCTGAGTGANCCAGGTTTCTTCTCGACG
AAATCTTTGCATGTATAGTATTGGACGATCTTGGAACCATTTGGACCATT
TGATACCATGTGCTCTGATGATAATGGAGCTTCTCCACACAGTTGACATT
TGACTGGATCGTTTTGGTTGCCAAGGAATGTCTTCTTCTTTGGAATTTGA
TTTGTTTGAGGTGGATCCTTCTTCTCGTTAGTACGTTGAGTTTGAATGTG
GACTTTTTGTTGATTCAGCTTTTCCTCTTTCTCAAGAAAAGTTAGCAACT
TTCCCCAAGTTTGTTTTGGAGTGAATTCATCATCGCTGATGCTTGACAAG
AATCTTGTGAGACGACCCTCACCGAGTTGCTGGTAAATTNTGATTCCAAT
TGGTGAACAAGCTTTGGATGATAGCGCAGATACTTGACACCAATCATCAA
GTGGACTTCTCCTCCAACATGAGGTGGTAGTTTGGGNCTGGTAAATTCGT
GGAAGTGACTCTCCAAAGTAAAGATTGTCTTCAATTTGATGTTTATGAGC
AAGTTGCATCACTTCACGAATGATATTTGAGAACTTGCTGAGTGTGATGG
CGAGTTTTTCAGGATCACGCCTTTTGGCGATTTCAGATTTATTGAGTGTC
TGAAGTCTTTTCGTTAGAAGAGTTCTCGAATCCCCAAAAGCTACTTTTAG
ACGTTGCCAAATATCATCG Run BLAST on NCBI protein sequence of TCONS_00057557-protein >TCONS_00057557-protein ID=TCONS_00057557-protein|Name=TCONS_00057557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
MHLSPSIWKHQLQQPHFHSSQAQIALLPKKDRAMKTFKQQLRKLNNPSNI
KDKQDILDSESKLQQLNYVEYVENLPQDVQDSMQNHPIQNFIPWRAVWKG
NSVSTPCQIVFDASQATSSGYSLNDLLAKGRNNLNKLQEIIIRWSMHRVG
VHTNVRKTYNTVRLNQSDWCYQRYIWEENLNPSKIPKEKVIKTLIYGVRS
SGNQSEYALRKVAELSKDQYPKANEVIQNDVYVDDCITGAQSIQQAHILA
DDIELNINKGGFQLKGVSFSGEKPLENLTDDGETIHVGGMRWFPKDDLLS
LNISQLNFAKKCRGKKPSNSVNIIPAKLTRRHCASKVAEIFDLTGKVTPI
VAAMKLDLQELVHRKLDWDDKIPDELRPLWESHFDLMKEINNLKYQRAII
PEDAISLDLETIDFGDASKX Run BLAST on NCBI transcript from alignment at scaffold_292:125368..127486 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057557 ID=TCONS_00057557|Name=TCONS_00057557|organism=Clytia hemisphaerica|type=transcript|length=2119bp|location=Sequence derived from alignment at scaffold_292:125368..127486 (Clytia hemisphaerica)
CGATGATATTTGGCAACGTCTAAAAGTAGCTTTTGGGGATTCGAGAACTC
TTCTAACGAAAAGACTTCAGACACTCAATAAATCTGAAATCGCCAAAAGG
CGTGATCCTGAAAAACTCGCCATCACACTCAGCAAGTTCTCAAATATCAT
TCGTGAAGTGATGCAACTTGCTCATAAACATCAAATTGAAGACAATCTTT
ACTTTGGAGAGTCACTTCCACGAATTTACCAGNCCCAAACTACCACCTCA
TGTTGGAGGAGAAGTCCACTTGATGATTGGTGTCAAGTATCTGCGCTATC
ATCCAAAGCTTGTTCACCAATTGGAATCANAATTTACCAGCAACTCGGTG
AGGGTCGTCTCACAAGATTCTTGTCAAGCATCAGCGATGATGAATTCACT
CCAAAACAAACTTGGGGAAAGTTGCTAACTTTTCTTGAGAAAGAGGAAAA
GCTGAATCAACAAAAAGTCCACATTCAAACTCAACGTACTAACGAGAAGA
AGGATCCACCTCAAACAAATCAAATTCCAAAGAAGAAGACATTCCTTGGC
AACCAAAACGATCCAGTCAAATGTCAACTGTGTGGAGAAGCTCCATTATC
ATCAGAGCACATGGTATCAAATGGTCCAAATGGTTCCAAGATCGTCCAAT
ACTATACATGCAAAGATTTCGTCGAGAAGAAACCTGGNTCACTCAGATGT
CCATCTCACACATCAACAGCGACTGTTCGAACAAGTCGAGTCTACTGGTT
GTGAAGTGTCCTACAGATGTCCATCTTGCAAAACGTGCAAGGATTGCAAG
CACTTCGACCAATACCAAACAACCAGCTTGAGGGAGGAAGTGGAGCAAAG
CCTAATCAATGCATCTGTCACCATCAATCTGGAAACATCAACTACAACAG
CCTCACTTCCATTCATCTCAAGCCCAAATCGCCTTACTGCCAAAAAAAGA
TCGTGCAATGAAAACCTTCAAGCAACAACTCAGAAAGCTGAACAACCCAT
CCAATATCAAAGACAAGCAAGACATTTTGGATTCGGAATCGAAGCTTCAG
CAACTCAATTATGTCGAATACGTTGAAAACCTCCCACAAGACGTTCAAGA
CTCAATGCAAAACCATCCAATCCAGAACTTCATTCCTTGGCGTGCTGTGT
GGAAGGGGAATTCGGTAAGCACACCTTGCCAAATTGTATTTGACGCCTCT
CAAGCTACGTCCTCTGGTTATAGTCTTAATGATCTCTTGGCCAAGGGTCG
TAACAATCTAAATAAACTCCAAGAAATCATCATCCGGTGGTCAATGCACC
GAGTTGGAGTTCATACCAACGTGAGAAAAACGTACAATACAGTCAGACTC
AACCAATCAGACTGGTGCTACCAACGATACATTTGGGAAGAAAACCTTAA
TCCTTCGAAGATACCCAaagaaaaagtcataaaaacacTTATATATGGCG
TTCGATCGAGTGGAAACCAATCTGAGTATGCATTACGAAAGGTAGCCGAA
TTATCAAAAGATCAATATCCAAAAGCCAACGAAGTGATACAGAATGACGT
CTACGTAGATGACTGTATCACTGGTGCTCAATCAATCCAACAAGCCCACA
TTTTGGCAGACGACATCGAACTCAACATCAACAAAGGAGGATTCCAACTG
AAAGGTGTTTCTTTTTCTGGAGAAAAACCGTTGGAGAATCTCACAGACGA
TGGAGAGACGATTCACGTTGGTGGAATGCGATGGTTTCCTAAAGACGATT
TGTTATCACTCAATATCAGTCAACTCAACTTTGCGAAGAAATGTCGTGGT
AAAAAGCCATCAAACTCTGTCAACATCATTCCTGCCAAACTCACTCGAAG
ACACTGCGCATCGAAAGTAGCAGAAATTTTTGATCTTACAGGAAAAGTCA
CCCCAATCGTTGCTGCTATGAAGTTGGATCTACAAGAACTGGTTCACCGA
AAACTCGACTGGGATGACAAGATCCCAGATGAACTAAGACCATTGTGGGA
ATCACACTTCGACCTGATGAAGGAAATCAACAACCTCAAATATCAACGTG
CTATCATTCCTGAAGATGCAATTTCTCTCGACCTGGAAACCATCGATTTT
GGCGACGCTAGCAAGTCNN Coding sequence (CDS) from alignment at scaffold_292:125368..127486 >TCONS_00057557 ID=TCONS_00057557|Name=TCONS_00057557|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_292:125368..127486 (Clytia hemisphaerica)
ATGCATCTGTCACCATCAATCTGGAAACATCAACTACAACAGCCTCACTT
CCATTCATCTCAAGCCCAAATCGCCTTACTGCCAAAAAAAGATCGTGCAA
TGAAAACCTTCAAGCAACAACTCAGAAAGCTGAACAACCCATCCAATATC
AAAGACAAGCAAGACATTTTGGATTCGGAATCGAAGCTTCAGCAACTCAA
TTATGTCGAATACGTTGAAAACCTCCCACAAGACGTTCAAGACTCAATGC
AAAACCATCCAATCCAGAACTTCATTCCTTGGCGTGCTGTGTGGAAGGGG
AATTCGGTAAGCACACCTTGCCAAATTGTATTTGACGCCTCTCAAGCTAC
GTCCTCTGGTTATAGTCTTAATGATCTCTTGGCCAAGGGTCGTAACAATC
TAAATAAACTCCAAGAAATCATCATCCGGTGGTCAATGCACCGAGTTGGA
GTTCATACCAACGTGAGAAAAACGTACAATACAGTCAGACTCAACCAATC
AGACTGGTGCTACCAACGATACATTTGGGAAGAAAACCTTAATCCTTCGA
AGATACCCAaagaaaaagtcataaaaacacTTATATATGGCGTTCGATCG
AGTGGAAACCAATCTGAGTATGCATTACGAAAGGTAGCCGAATTATCAAA
AGATCAATATCCAAAAGCCAACGAAGTGATACAGAATGACGTCTACGTAG
ATGACTGTATCACTGGTGCTCAATCAATCCAACAAGCCCACATTTTGGCA
GACGACATCGAACTCAACATCAACAAAGGAGGATTCCAACTGAAAGGTGT
TTCTTTTTCTGGAGAAAAACCGTTGGAGAATCTCACAGACGATGGAGAGA
CGATTCACGTTGGTGGAATGCGATGGTTTCCTAAAGACGATTTGTTATCA
CTCAATATCAGTCAACTCAACTTTGCGAAGAAATGTCGTGGTAAAAAGCC
ATCAAACTCTGTCAACATCATTCCTGCCAAACTCACTCGAAGACACTGCG
CATCGAAAGTAGCAGAAATTTTTGATCTTACAGGAAAAGTCACCCCAATC
GTTGCTGCTATGAAGTTGGATCTACAAGAACTGGTTCACCGAAAACTCGA
CTGGGATGACAAGATCCCAGATGAACTAAGACCATTGTGGGAATCACACT
TCGACCTGATGAAGGAAATCAACAACCTCAAATATCAACGTGCTATCATT
CCTGAAGATGCAATTTCTCTCGACCTGGAAACCATCGATTTTGGCGACGC
TAGCAAGTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057557-exon-scaffold_292-1491911889:125368..127486 | TCONS_00057557-exon-scaffold_292-1491911889:125368..127486 | Clytia hemisphaerica | exon |
| TCONS_00057557-exon-scaffold_292-1510915933:125368..127486 | TCONS_00057557-exon-scaffold_292-1510915933:125368..127486 | Clytia hemisphaerica | exon |
| TCONS_00057557-exon-scaffold_292-1575043694:125368..127486 | TCONS_00057557-exon-scaffold_292-1575043694:125368..127486 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_292 | supercontig | scaffold_292:125368..127486 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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