TCONS_00057548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057548
Unique NameTCONS_00057548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057548 ID=TCONS_00057548|Name=TCONS_00057548|organism=Clytia hemisphaerica|type=transcript|length=688bp
AAAATGGGCAATCACACGAGTTGATAGTGCTCTTACGCTCCGACGTTTTT
GGGAAAGCAGCTAGCTCGTTGCAAACGAAGTCAGCACAATAAGATGTAAG
ATGGTCACGAATTGCTACAATATTAGGATCTTTGGCTATAGAAGATTTAG
tcttttgaaattctttaaccACATTTACATCTCTTTCTGTACGCAAGGCA
CTGAGAACAGTAAAGAAACCTCGCACAAACTCCTCAAGGCTGCAATGAAT
GTTGACAACTGTCTTCAGTTTGCTATTAAAACTTTCGAGTCTGTTGTTCG
TCGAGTTCAAAAAGTCTCCTGATTCTGCTTTAAAGCATCTTACGCATTCT
TTAGAGATTGGCTTCCAATTTGTTTTGTAGTAAGCGACAAGGTCAGGAGA
TTCTAAAGCTTCGAACTGTTTTTCGAACTTTTTAAACTATCTTCTTGGTT
CCAAGCATagcacattttttcaaagagagTTTTCGCTTCTTCTTTGACAG
TTTTGGCTAACGAAAGAGTCGACAGTTCGCGTTTAATGGCCTTTAAAGCA
TGAAATAAACAAACTAAGATTGGAACTCCAAGAAGCTCAGCAATTCGATT
TCTCTCGTTTACGTCTTTGTCAGCCATTACCACTCGAATCTTTTTGGTTG
GGTTCTCATCAGCAAACTTATTAATTAGCCAGGTAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_292:1583..2270

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057548 ID=TCONS_00057548|Name=TCONS_00057548|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at scaffold_292:1583..2270 (Clytia hemisphaerica)
CCTTACCTGGCTAATTAATAAGTTTGCTGATGAGAACCCAACCAAAAAGA
TTCGAGTGGTAATGGCTGACAAAGACGTAAACGAGAGAAATCGAATTGCT
GAGCTTCTTGGAGTTCCAATCTTAGTTTGTTTATTTCATGCTTTAAAGGC
CATTAAACGCGAACTGTCGACTCTTTCGTTAGCCAAAACTGTCAAAGAAG
AAGCGAAAActctctttgaaaaaatgtgctATGCTTGGAACCAAGAAGAT
AGTTTAAAAAGTTCGAAAAACAGTTCGAAGCTTTAGAATCTCCTGACCTT
GTCGCTTACTACAAAACAAATTGGAAGCCAATCTCTAAAGAATGCGTAAG
ATGCTTTAAAGCAGAATCAGGAGACTTTTTGAACTCGACGAACAACAGAC
TCGAAAGTTTTAATAGCAAACTGAAGACAGTTGTCAACATTCATTGCAGC
CTTGAGGAGTTTGTGCGAGGTTTCTTTACTGTTCTCAGTGCCTTGCGTAC
AGAAAGAGATGTAAATGTggttaaagaatttcaaaagaCTAAATCTTCTA
TAGCCAAAGATCCTAATATTGTAGCAATTCGTGACCATCTTACATCTTAT
TGTGCTGACTTCGTTTGCAACGAGCTAGCTGCTTTCCCAAAAACGTCGGA
GCGTAAGAGCACTATCAACTCGTGTGATTGCCCATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036285XLOC_036285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057548-exon-scaffold_292-1491911889:1583..2270TCONS_00057548-exon-scaffold_292-1491911889:1583..2270Clytia hemisphaericaexon
TCONS_00057548-exon-scaffold_292-1510915933:1583..2270TCONS_00057548-exon-scaffold_292-1510915933:1583..2270Clytia hemisphaericaexon
TCONS_00057548-exon-scaffold_292-1575043694:1583..2270TCONS_00057548-exon-scaffold_292-1575043694:1583..2270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_292supercontigscaffold_292:1583..2270 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0740663	0.0722263	0	0.0820455	1.698	1.34178	1.80925	1.60465	1.37311	1.77813	0.82543	1.13454	1.67481	1.17659	0.126172	0.0902678	0	0.227958	0	0.247169	0.143223	0.209577	0	0.231622	1.03378	2.62593	0	0	0	0.0837567
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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