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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057543 ID=TCONS_00057543|Name=TCONS_00057543|organism=Clytia hemisphaerica|type=transcript|length=881bp
ttcagaataatcaGGAAGGCATTTCAAggcactcaattttcttcaagttc
ttaaagcactgacattctgatgttctagtacttttaaaccaagagtcttt
tcttttactttgatgttatgaatgcttgaattatcaagagatttacgttt
atgagcaaaattacgtctaacgaggtagtttgttaaaagtcaaattaaat
tgacaatAGAAATTGTCACCgaaccataaaaaaattcgttcttacgacat
agatagaacaacagaaattcagctgtactcattccagccgcggctttctt
atactatggtaacAGGATGTACTAATCATATAAAATAGGTTTTAATAAGA
AATCCAAGTAAAAACGAAAAGAAATTCCGTTCAACTAGCGTACGTACAAC
TCCCACTTGCCAGCCGTAGTATAACCTGCATTCCCTTTAGAATCATCACA
GCTCCATCTCGTGCCAAGATATCCCAGGATCACGTGGTATTGGTAGGGCT
CATAAATAAGATGAATTCCACCGAATTTCAATCCAGAACAAGCTTGAACA
GATGTGAATGAATCATCCATTGGTAGAAATCGCACATCACCACACAATCC
AGTTTTCTTGAAACCACTAACCATCCAGTCAACGAATTTGAGGCCAGTCA
AAACGACATCTAGGGTCCGCATATGCCATCTTTTGTAACACATAATACGA
ATTTCACTGTATCCAGAAGATTTGTAAAGCTTTTGGAGTTCTGTGGGTGC
CAAGTAGAATGATCCCGACTGCACATTTTGAAGTTCAGATATAGATGATG
GGTTTTGAACAGCATTGTTAGTAGAGTCTAAAGATGTTGCATCTGGGATG
ATTTCCAAGTTTCCAACCATCAACCAGCCAC Run BLAST on NCBI protein sequence of TCONS_00057543-protein >TCONS_00057543-protein ID=TCONS_00057543-protein|Name=TCONS_00057543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
GWLMVGNLEIIPDATSLDSTNNAVQNPSSISELQNVQSGSFYLAPTELQK
LYKSSGYSEIRIMCYKRWHMRTLDVVLTGLKFVDWMVSGFKKTGLCGDVR
FLPMDDSFTSVQACSGLKFGGIHLIYEPYQYHVILGYLGTRWSCDDSKGN
AGYTTAGKWELYVR Run BLAST on NCBI transcript from alignment at scaffold_291:238901..239781 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057543 ID=TCONS_00057543|Name=TCONS_00057543|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at scaffold_291:238901..239781 (Clytia hemisphaerica)
GTGGCTGGTTGATGGTTGGAAACTTGGAAATCATCCCAGATGCAACATCT
TTAGACTCTACTAACAATGCTGTTCAAAACCCATCATCTATATCTGAACT
TCAAAATGTGCAGTCGGGATCATTCTACTTGGCACCCACAGAACTCCAAA
AGCTTTACAAATCTTCTGGATACAGTGAAATTCGTATTATGTGTTACAAA
AGATGGCATATGCGGACCCTAGATGTCGTTTTGACTGGCCTCAAATTCGT
TGACTGGATGGTTAGTGGTTTCAAGAAAACTGGATTGTGTGGTGATGTGC
GATTTCTACCAATGGATGATTCATTCACATCTGTTCAAGCTTGTTCTGGA
TTGAAATTCGGTGGAATTCATCTTATTTATGAGCCCTACCAATACCACGT
GATCCTGGGATATCTTGGCACGAGATGGAGCTGTGATGATTCTAAAGGGA
ATGCAGGTTATACTACGGCTGGCAAGTGGGAGTTGTACGTACGCTAGTTG
AACGGAATTTCTTTTCGTTTTTACTTGGATTTCTTATTAAAACCTATTTT
ATATGATTAGTACATCCTgttaccatagtataagaaagccgcggctggaa
tgagtacagctgaatttctgttgttctatctatgtcgtaagaacgaattt
ttttatggttcGGTGACAATTTCTattgtcaatttaatttgacttttaac
aaactacctcgttagacgtaattttgctcataaacgtaaatctcttgata
attcaagcattcataacatcaaagtaaaagaaaagactcttggtttaaaa
gtactagaacatcagaatgtcagtgctttaagaacttgaagaaaattgag
tgccTTGAAATGCCTTCCtgattattctgaa Coding sequence (CDS) from alignment at scaffold_291:238901..239781 >TCONS_00057543 ID=TCONS_00057543|Name=TCONS_00057543|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_291:238901..239781 (Clytia hemisphaerica)
GGCTGGTTGATGGTTGGAAACTTGGAAATCATCCCAGATGCAACATCTTT
AGACTCTACTAACAATGCTGTTCAAAACCCATCATCTATATCTGAACTTC
AAAATGTGCAGTCGGGATCATTCTACTTGGCACCCACAGAACTCCAAAAG
CTTTACAAATCTTCTGGATACAGTGAAATTCGTATTATGTGTTACAAAAG
ATGGCATATGCGGACCCTAGATGTCGTTTTGACTGGCCTCAAATTCGTTG
ACTGGATGGTTAGTGGTTTCAAGAAAACTGGATTGTGTGGTGATGTGCGA
TTTCTACCAATGGATGATTCATTCACATCTGTTCAAGCTTGTTCTGGATT
GAAATTCGGTGGAATTCATCTTATTTATGAGCCCTACCAATACCACGTGA
TCCTGGGATATCTTGGCACGAGATGGAGCTGTGATGATTCTAAAGGGAAT
GCAGGTTATACTACGGCTGGCAAGTGGGAGTTGTACGTACGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057543-exon-scaffold_291-1491911889:238901..239781 | TCONS_00057543-exon-scaffold_291-1491911889:238901..239781 | Clytia hemisphaerica | exon |
| TCONS_00057543-exon-scaffold_291-1510915933:238901..239781 | TCONS_00057543-exon-scaffold_291-1510915933:238901..239781 | Clytia hemisphaerica | exon |
| TCONS_00057543-exon-scaffold_291-1575043694:238901..239781 | TCONS_00057543-exon-scaffold_291-1575043694:238901..239781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_291 | supercontig | scaffold_291:238901..239781 . |
Blast
The following BLAST results are available for this feature:
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