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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057536 ID=TCONS_00057536|Name=TCONS_00057536|organism=Clytia hemisphaerica|type=transcript|length=1825bp
ATGATAAATTTTTTCAGTCAGCCAAATGTCTCATATTGAGGgcgggttct
agtcttgactcTTATTATGAACACTTGTATGATGCCATCCCTATCCCATA
TCTGTTTGACAACTTTTCACAGCACAAATCATGCAATAATTGCTCTTACT
GAGTTAGTGAGAGATGTCCTTGATAATAAATAATTAGCAGTAGGTAATTT
TATCGATCTCAAGAAAGCATTTGATATTGTAGAGCACAGTATTCTTCTTC
ATAAACTTCATCATTAAAGGCGTCAGAGGTAAACCTTTTGATCTTATTTC
TTCCTACCTCAGCATAGTACTCTCATACAAAACATGTTATCAAATTCTAT
TGACCAAAAACATGGAGTCCCCCACTGATCAGTTCTAGGCCCCCtctttt
ttataatatattAATGACCTCCACAAAGCTATCAACAACTGCACAACCAT
TCACTTTGCTGATGACACCAGCCTGGTCTGCAGAGACAAATCGTGTAAAT
AAGATCTAACTCAACTGGTTCATTGGCTCAGAGCAAACAAAATCTGCCTG
AATGCCTCAAAAACAGAACTTATATATTCTATTCAAGTCGAAATCCAAAA
ACGTTACAAAAAAGCTAAACTTCAGACTGAGGGGACAGAAGCTTGAACTT
TCAAGAACAGTAAGTTATTTAGGTGTTAAAGGCTGGTCTTCACTTCCGCG
Cgtcatgagcgaaaactttttgacgtttttgtaaggtcattggtcggttg
aaaaatgaagtcGTCGTCGAAATTGACATaaaggatgaaaaaagtagaac
ttccttcaactatttttttttgttcgcgcggaACTTTTTATGACAttatc
ttttcttcaggcaaaaaaggttaagaaaaaaattgttgccCCTTTCgggc
gaaagtggagaccggcctttactaTTGATGAAAACCTGGACGGGACCCCC
AACTTTCTAAGACTACTTTGAAACTCTCAGGAGCAGCTGGTATGCTTAGT
AAGTTGCGCCACTATCTAGACTACAAAACCCTCCTATCTGTGTTATTATG
CTCTTTTTGAATCCCACGTCAGCTACTTTATACAAACCCTAGGTATTAAG
ATCACTTCCTTTGACAAGTTAGAAAAACTCCAGAACAAGGCGCTTAGGAT
CATTCACTTTAAGGGTCCCCGTAAGTCTGCCAAACCACTTTAGTCAATGG
CAGAATTCTTCCAATTCCAATTCCtgatgaaagaaaaaagttgtctATTT
GCATTATGACTCCTTCAAAAACAGGTTACCTAAATATTTCTCTACTTTTC
TCACTACTGTAGGTAATAATGCTCTCCATGCCACACGAAACAAACAACTG
TCTATCACAGTGACAAAAACAGTAATGTATGGATCCCATAACATAGCAAA
TCTCATCACAAAGGACTGGAACGAAATCCACACCCATCTGCCTTCCCTTG
ATAAAATCACTAGCAAAACCACTTTTAAAGCCCACCTTCGCACATACCTT
CTTACAAACTTGCTACTGGCTAAACCCCACCCACCTTCTGGCACTTAACC
GCTCCCCACCCTTCTCTAATCTCTAATTTCAATTTTCGAACGTTCCCTgc
gaaaccaaaacaaacaaaaggagaaataaaaaaaactttaaaaaactcaT
TCAAGAACAATCGAACAATATCTATACAAAATGTCGGGAAAAAGACCAAG
AAAAACTAACTTCACTGCCACTGCTGATGAGATCAGAATCATCTTGGAGG
AATACGAGGCTAGTCAGAGCACGATTGAAGGAAAGTTCTCCCCTTCAATA
ACAAACGCTGCTAAACAAGCTCTAT Run BLAST on NCBI transcript from alignment at scaffold_291:104132..105956 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057536 ID=TCONS_00057536|Name=TCONS_00057536|organism=Clytia hemisphaerica|type=transcript|length=1825bp|location=Sequence derived from alignment at scaffold_291:104132..105956 (Clytia hemisphaerica)
ATAGAGCTTGTTTAGCAGCGTTTGTTATTGAAGGGGAGAACTTTCCTTCA
ATCGTGCTCTGACTAGCCTCGTATTCCTCCAAGATGATTCTGATCTCATC
AGCAGTGGCAGTGAAGTTAGTTTTTCTTGGTCTTTTTCCCGACATTTTGT
ATAGATATTGTTCGATTGTTCTTGAAtgagttttttaaagttttttttat
ttctccttttgtttgttttggtttcgcAGGGAACGTTCGAAAATTGAAAT
TAGAGATTAGAGAAGGGTGGGGAGCGGTTAAGTGCCAGAAGGTGGGTGGG
GTTTAGCCAGTAGCAAGTTTGTAAGAAGGTATGTGCGAAGGTGGGCTTTA
AAAGTGGTTTTGCTAGTGATTTTATCAAGGGAAGGCAGATGGGTGTGGAT
TTCGTTCCAGTCCTTTGTGATGAGATTTGCTATGTTATGGGATCCATACA
TTACTGTTTTTGTCACTGTGATAGACAGTTGTTTGTTTCGTGTGGCATGG
AGAGCATTATTACCTACAGTAGTGAGAAAAGTAGAGAAATATTTAGGTAA
CCTGTTTTTGAAGGAGTCATAATGCAAATagacaacttttttctttcatc
aGGAATTGGAATTGGAAGAATTCTGCCATTGACTAAAGTGGTTTGGCAGA
CTTACGGGGACCCTTAAAGTGAATGATCCTAAGCGCCTTGTTCTGGAGTT
TTTCTAACTTGTCAAAGGAAGTGATCTTAATACCTAGGGTTTGTATAAAG
TAGCTGACGTGGGATTCAAAAAGAGCATAATAACACAGATAGGAGGGTTT
TGTAGTCTAGATAGTGGCGCAACTTACTAAGCATACCAGCTGCTCCTGAG
AGTTTCAAAGTAGTCTTAGAAAGTTGGGGGTCCCGTCCAGGTTTTCATCA
AtagtaaaggccggtctccactttcgcccGAAAGGggcaacaattttttt
cttaaccttttttgcctgaagaaaagataaTGTCATAAAAAGTtccgcgc
gaacaaaaaaaaatagttgaaggaagttctacttttttcatcctttATGT
CAATTTCGACGACgacttcatttttcaaccgaccaatgaccttacaaaaa
cgtcaaaaagttttcgctcatgacGCGCGGAAGTGAAGACCAGCCTTTAA
CACCTAAATAACTTACTGTTCTTGAAAGTTCAAGCTTCTGTCCCCTCAGT
CTGAAGTTTAGCTTTTTTGTAACGTTTTTGGATTTCGACTTGAATAGAAT
ATATAAGTTCTGTTTTTGAGGCATTCAGGCAGATTTTGTTTGCTCTGAGC
CAATGAACCAGTTGAGTTAGATCTTATTTACACGATTTGTCTCTGCAGAC
CAGGCTGGTGTCATCAGCAAAGTGAATGGTTGTGCAGTTGTTGATAGCTT
TGTGGAGGTCATTaatatattataaaaaagaGGGGGCCTAGAACTGATCA
GTGGGGGACTCCATGTTTTTGGTCAATAGAATTTGATAACATGTTTTGTA
TGAGAGTACTATGCTGAGGTAGGAAGAAATAAGATCAAAAGGTTTACCTC
TGACGCCTTTAATGATGAAGTTTATGAAGAAGAATACTGTGCTCTACAAT
ATCAAATGCTTTCTTGAGATCGATAAAATTACCTACTGCTAATTATTTAT
TATCAAGGACATCTCTCACTAACTCAGTAAGAGCAATTATTGCATGATTT
GTGCTGTGAAAAGTTGTCAAACAGATATGGGATAGGGATGGCATCATACA
AGTGTTCATAATAAgagtcaagactagaacccgcCCTCAATATGAGACAT
TTGGCTGACTGAAAAAATTTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057536-exon-scaffold_291-1491911889:104132..105956 | TCONS_00057536-exon-scaffold_291-1491911889:104132..105956 | Clytia hemisphaerica | exon |
| TCONS_00057536-exon-scaffold_291-1510915933:104132..105956 | TCONS_00057536-exon-scaffold_291-1510915933:104132..105956 | Clytia hemisphaerica | exon |
| TCONS_00057536-exon-scaffold_291-1575043694:104132..105956 | TCONS_00057536-exon-scaffold_291-1575043694:104132..105956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_291 | supercontig | scaffold_291:104132..105956 . |
Blast
The following BLAST results are available for this feature:
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