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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057536 ID=TCONS_00057536|Name=TCONS_00057536|organism=Clytia hemisphaerica|type=transcript|length=1825bp ATGATAAATTTTTTCAGTCAGCCAAATGTCTCATATTGAGGgcgggttct agtcttgactcTTATTATGAACACTTGTATGATGCCATCCCTATCCCATA TCTGTTTGACAACTTTTCACAGCACAAATCATGCAATAATTGCTCTTACT GAGTTAGTGAGAGATGTCCTTGATAATAAATAATTAGCAGTAGGTAATTT TATCGATCTCAAGAAAGCATTTGATATTGTAGAGCACAGTATTCTTCTTC ATAAACTTCATCATTAAAGGCGTCAGAGGTAAACCTTTTGATCTTATTTC TTCCTACCTCAGCATAGTACTCTCATACAAAACATGTTATCAAATTCTAT TGACCAAAAACATGGAGTCCCCCACTGATCAGTTCTAGGCCCCCtctttt ttataatatattAATGACCTCCACAAAGCTATCAACAACTGCACAACCAT TCACTTTGCTGATGACACCAGCCTGGTCTGCAGAGACAAATCGTGTAAAT AAGATCTAACTCAACTGGTTCATTGGCTCAGAGCAAACAAAATCTGCCTG AATGCCTCAAAAACAGAACTTATATATTCTATTCAAGTCGAAATCCAAAA ACGTTACAAAAAAGCTAAACTTCAGACTGAGGGGACAGAAGCTTGAACTT TCAAGAACAGTAAGTTATTTAGGTGTTAAAGGCTGGTCTTCACTTCCGCG Cgtcatgagcgaaaactttttgacgtttttgtaaggtcattggtcggttg aaaaatgaagtcGTCGTCGAAATTGACATaaaggatgaaaaaagtagaac ttccttcaactatttttttttgttcgcgcggaACTTTTTATGACAttatc ttttcttcaggcaaaaaaggttaagaaaaaaattgttgccCCTTTCgggc gaaagtggagaccggcctttactaTTGATGAAAACCTGGACGGGACCCCC AACTTTCTAAGACTACTTTGAAACTCTCAGGAGCAGCTGGTATGCTTAGT AAGTTGCGCCACTATCTAGACTACAAAACCCTCCTATCTGTGTTATTATG CTCTTTTTGAATCCCACGTCAGCTACTTTATACAAACCCTAGGTATTAAG ATCACTTCCTTTGACAAGTTAGAAAAACTCCAGAACAAGGCGCTTAGGAT CATTCACTTTAAGGGTCCCCGTAAGTCTGCCAAACCACTTTAGTCAATGG CAGAATTCTTCCAATTCCAATTCCtgatgaaagaaaaaagttgtctATTT GCATTATGACTCCTTCAAAAACAGGTTACCTAAATATTTCTCTACTTTTC TCACTACTGTAGGTAATAATGCTCTCCATGCCACACGAAACAAACAACTG TCTATCACAGTGACAAAAACAGTAATGTATGGATCCCATAACATAGCAAA TCTCATCACAAAGGACTGGAACGAAATCCACACCCATCTGCCTTCCCTTG ATAAAATCACTAGCAAAACCACTTTTAAAGCCCACCTTCGCACATACCTT CTTACAAACTTGCTACTGGCTAAACCCCACCCACCTTCTGGCACTTAACC GCTCCCCACCCTTCTCTAATCTCTAATTTCAATTTTCGAACGTTCCCTgc gaaaccaaaacaaacaaaaggagaaataaaaaaaactttaaaaaactcaT TCAAGAACAATCGAACAATATCTATACAAAATGTCGGGAAAAAGACCAAG AAAAACTAACTTCACTGCCACTGCTGATGAGATCAGAATCATCTTGGAGG AATACGAGGCTAGTCAGAGCACGATTGAAGGAAAGTTCTCCCCTTCAATA ACAAACGCTGCTAAACAAGCTCTAT Run BLAST on NCBI transcript from alignment at scaffold_291:104132..105956 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057536 ID=TCONS_00057536|Name=TCONS_00057536|organism=Clytia hemisphaerica|type=transcript|length=1825bp|location=Sequence derived from alignment at scaffold_291:104132..105956 (Clytia hemisphaerica) ATAGAGCTTGTTTAGCAGCGTTTGTTATTGAAGGGGAGAACTTTCCTTCA
ATCGTGCTCTGACTAGCCTCGTATTCCTCCAAGATGATTCTGATCTCATC
AGCAGTGGCAGTGAAGTTAGTTTTTCTTGGTCTTTTTCCCGACATTTTGT
ATAGATATTGTTCGATTGTTCTTGAAtgagttttttaaagttttttttat
ttctccttttgtttgttttggtttcgcAGGGAACGTTCGAAAATTGAAAT
TAGAGATTAGAGAAGGGTGGGGAGCGGTTAAGTGCCAGAAGGTGGGTGGG
GTTTAGCCAGTAGCAAGTTTGTAAGAAGGTATGTGCGAAGGTGGGCTTTA
AAAGTGGTTTTGCTAGTGATTTTATCAAGGGAAGGCAGATGGGTGTGGAT
TTCGTTCCAGTCCTTTGTGATGAGATTTGCTATGTTATGGGATCCATACA
TTACTGTTTTTGTCACTGTGATAGACAGTTGTTTGTTTCGTGTGGCATGG
AGAGCATTATTACCTACAGTAGTGAGAAAAGTAGAGAAATATTTAGGTAA
CCTGTTTTTGAAGGAGTCATAATGCAAATagacaacttttttctttcatc
aGGAATTGGAATTGGAAGAATTCTGCCATTGACTAAAGTGGTTTGGCAGA
CTTACGGGGACCCTTAAAGTGAATGATCCTAAGCGCCTTGTTCTGGAGTT
TTTCTAACTTGTCAAAGGAAGTGATCTTAATACCTAGGGTTTGTATAAAG
TAGCTGACGTGGGATTCAAAAAGAGCATAATAACACAGATAGGAGGGTTT
TGTAGTCTAGATAGTGGCGCAACTTACTAAGCATACCAGCTGCTCCTGAG
AGTTTCAAAGTAGTCTTAGAAAGTTGGGGGTCCCGTCCAGGTTTTCATCA
AtagtaaaggccggtctccactttcgcccGAAAGGggcaacaattttttt
cttaaccttttttgcctgaagaaaagataaTGTCATAAAAAGTtccgcgc
gaacaaaaaaaaatagttgaaggaagttctacttttttcatcctttATGT
CAATTTCGACGACgacttcatttttcaaccgaccaatgaccttacaaaaa
cgtcaaaaagttttcgctcatgacGCGCGGAAGTGAAGACCAGCCTTTAA
CACCTAAATAACTTACTGTTCTTGAAAGTTCAAGCTTCTGTCCCCTCAGT
CTGAAGTTTAGCTTTTTTGTAACGTTTTTGGATTTCGACTTGAATAGAAT
ATATAAGTTCTGTTTTTGAGGCATTCAGGCAGATTTTGTTTGCTCTGAGC
CAATGAACCAGTTGAGTTAGATCTTATTTACACGATTTGTCTCTGCAGAC
CAGGCTGGTGTCATCAGCAAAGTGAATGGTTGTGCAGTTGTTGATAGCTT
TGTGGAGGTCATTaatatattataaaaaagaGGGGGCCTAGAACTGATCA
GTGGGGGACTCCATGTTTTTGGTCAATAGAATTTGATAACATGTTTTGTA
TGAGAGTACTATGCTGAGGTAGGAAGAAATAAGATCAAAAGGTTTACCTC
TGACGCCTTTAATGATGAAGTTTATGAAGAAGAATACTGTGCTCTACAAT
ATCAAATGCTTTCTTGAGATCGATAAAATTACCTACTGCTAATTATTTAT
TATCAAGGACATCTCTCACTAACTCAGTAAGAGCAATTATTGCATGATTT
GTGCTGTGAAAAGTTGTCAAACAGATATGGGATAGGGATGGCATCATACA
AGTGTTCATAATAAgagtcaagactagaacccgcCCTCAATATGAGACAT
TTGGCTGACTGAAAAAATTTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057536-exon-scaffold_291-1491911889:104132..105956 | TCONS_00057536-exon-scaffold_291-1491911889:104132..105956 | Clytia hemisphaerica | exon |
TCONS_00057536-exon-scaffold_291-1510915933:104132..105956 | TCONS_00057536-exon-scaffold_291-1510915933:104132..105956 | Clytia hemisphaerica | exon |
TCONS_00057536-exon-scaffold_291-1575043694:104132..105956 | TCONS_00057536-exon-scaffold_291-1575043694:104132..105956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_291 | supercontig | scaffold_291:104132..105956 . |
Blast
The following BLAST results are available for this feature:
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