TCONS_00057535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057535
Unique NameTCONS_00057535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057535 ID=TCONS_00057535|Name=TCONS_00057535|organism=Clytia hemisphaerica|type=transcript|length=810bp
tgaaatttcggaaagtcatgttttgaaaaaatctaatgaagaTATTAATG
ATACTAATACTAATCAGAGACTCACGggtgtttttgttaattctaatgtt
tttaatctCTCCAAAAGGCAACTGTCTAAAGCTGAAATTTCTTTGCTCTC
TAAAGCACTCAAGTTCGTTCCCACTCCTAACTTTGTAAACCATGCGCTTT
TGAAGGAGGAACTTGAGAAGTTTGGTCGATTTTTAAGATTGAAGTGGTTT
TATCGGAATGAAGAGAGGACAGACTACAATCTTTTCCGTcccaaatcaaa
atttaatccTAGAGGAAAAGATGCTGCGATCGAAATTTACCTTAGTCGTC
TGGAAGAAGAAATTTTAGCTATAGACACAAAACttaattattcaaattta
acaAGGGAGGAACGAGAGGCTATTAACAATTAAATCTTTGAAAGAGGATT
CTAGTATAGTAATTAAAGAGGCTGATAAGGGTTCTGCGGTTGTAGTCTGG
GATCGGGATGATTATCTCCAAGAAGCATCTAATCAACTTGGAGATAAAGC
TACTTATGAGGAGATTTTTGGCGATTGTATCAGTCCTCTTATAGCTACTA
TACAGGATTGTCTTTTGAAGATAAGTTCTAGAGGTGATGTTCCTAAACAA
ACCATGGATTATTTTCTTGTTGATAACCCCCGCCTGGGTCGATTCTACTT
GCTTCCTAAAATACACAAGAGGCTGCATAGTGTCCCCGGGAGACCAGTTA
TTTCAAATTCTGGTTATTTCACAGAAAATATCTCAGCGTTTGTTGATCAT
CATCTCCAGC
Run BLAST on NCBI

protein sequence of TCONS_00057535-protein

>TCONS_00057535-protein ID=TCONS_00057535-protein|Name=TCONS_00057535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
EISESHVLKKSNEDINDTNTNQRLTGVFVNSNVFNLSKRQLSKAEISLLS
KALKFVPTPNFVNHALLKEELEKFGRFLRLKWFYRNEERTDYNLFRPKSK
FNPRGKDAAIEIYLSRLEEEILAIDTKLNYSNLTREEREAINN
Run BLAST on NCBI

transcript from alignment at scaffold_291:101414..102223

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057535 ID=TCONS_00057535|Name=TCONS_00057535|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at scaffold_291:101414..102223 (Clytia hemisphaerica)
GCTGGAGATGATGATCAACAAACGCTGAGATATTTTCTGTGAAATAACCA
GAATTTGAAATAACTGGTCTCCCGGGGACACTATGCAGCCTCTTGTGTAT
TTTAGGAAGCAAGTAGAATCGACCCAGGCGGGGGTTATCAACAAGAAAAT
AATCCATGGTTTGTTTAGGAACATCACCTCTAGAACTTATCTTCAAAAGA
CAATCCTGTATAGTAGCTATAAGAGGACTGATACAATCGCCAAAAATCTC
CTCATAAGTAGCTTTATCTCCAAGTTGATTAGATGCTTCTTGGAGATAAT
CATCCCGATCCCAGACTACAACCGCAGAACCCTTATCAGCCTCTTTAATT
ACTATACTAGAATCCTCTTTCAAAGATTTAATTGTTAATAGCCTCTCGTT
CCTCCCTtgttaaatttgaataattaaGTTTTGTGTCTATAGCTAAAATT
TCTTCTTCCAGACGACTAAGGTAAATTTCGATCGCAGCATCTTTTCCTCT
AggattaaattttgatttgggACGGAAAAGATTGTAGTCTGTCCTCTCTT
CATTCCGATAAAACCACTTCAATCTTAAAAATCGACCAAACTTCTCAAGT
TCCTCCTTCAAAAGCGCATGGTTTACAAAGTTAGGAGTGGGAACGAACTT
GAGTGCTTTAGAGAGCAAAGAAATTTCAGCTTTAGACAGTTGCCTTTTGG
AGagattaaaaacattagaattaacaaaaacaccCGTGAGTCTCTGATTA
GTATTAGTATCATTAATAtcttcattagattttttcaaaacatgactttc
cgaaatttca

Coding sequence (CDS) from alignment at scaffold_291:101414..102223

>TCONS_00057535 ID=TCONS_00057535|Name=TCONS_00057535|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_291:101414..102223 (Clytia hemisphaerica)
TTAATTGTTAATAGCCTCTCGTTCCTCCCTtgttaaatttgaataattaa
GTTTTGTGTCTATAGCTAAAATTTCTTCTTCCAGACGACTAAGGTAAATT
TCGATCGCAGCATCTTTTCCTCTAggattaaattttgatttgggACGGAA
AAGATTGTAGTCTGTCCTCTCTTCATTCCGATAAAACCACTTCAATCTTA
AAAATCGACCAAACTTCTCAAGTTCCTCCTTCAAAAGCGCATGGTTTACA
AAGTTAGGAGTGGGAACGAACTTGAGTGCTTTAGAGAGCAAAGAAATTTC
AGCTTTAGACAGTTGCCTTTTGGAGagattaaaaacattagaattaacaa
aaacaccCGTGAGTCTCTGATTAGTATTAGTATCATTAATAtcttcatta
gattttttcaaaacatgactttccgaaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036272XLOC_036272Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057535-proteinTCONS_00057535-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057535-exon-scaffold_291-1491911889:101414..102223TCONS_00057535-exon-scaffold_291-1491911889:101414..102223Clytia hemisphaericaexon
TCONS_00057535-exon-scaffold_291-1510915933:101414..102223TCONS_00057535-exon-scaffold_291-1510915933:101414..102223Clytia hemisphaericaexon
TCONS_00057535-exon-scaffold_291-1575043694:101414..102223TCONS_00057535-exon-scaffold_291-1575043694:101414..102223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:101414..102223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177094	0.0575647	0.467867	0.784688	1.35332	1.13232	0.151788	0.213153	0	0.18485	0	0.0786289	0.314078	0.24463	0.134079	0.0359719	0.0443145	0.0454209	0.313757	0.0656649	0	0	0.406104	0.184604	0.0633792	0.50908	0	0	0	0.133509
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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