TCONS_00057529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057529
Unique NameTCONS_00057529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057529 ID=TCONS_00057529|Name=TCONS_00057529|organism=Clytia hemisphaerica|type=transcript|length=253bp
ttgaaatgtaaactactttctattaaaataaatatttcaatgtGTAAAAT
TGcatagtttttaatatttttcttgaaattaaataaaactactTTGAAAT
GCAGGatcaattaaaaataaaaatgtaattaTGCAAAAATATTCATCTAA
ATACTAAAGTAAGTCTTAAAAATATGTGGACACTTTAGTTTTTTTACCTT
CTCCCAGCACCCATTCATACTATGTTAGAAAGTCATAcgccgttggaaag
ata
Run BLAST on NCBI

transcript from alignment at scaffold_291:6862..7114

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057529 ID=TCONS_00057529|Name=TCONS_00057529|organism=Clytia hemisphaerica|type=transcript|length=253bp|location=Sequence derived from alignment at scaffold_291:6862..7114 (Clytia hemisphaerica)
tatctttccaacggcgTATGACTTTCTAACATAGTATGAATGGGTGCTGG
GAGAAGGTAAAAAAACTAAAGTGTCCACATATTTTTAAGACTTACTTTAG
TATTTAGATGAATATTTTTGCAtaattacatttttatttttaattgatCC
TGCATTTCAAagtagttttatttaatttcaagaaaaatattaaaaactat
gCAATTTTACacattgaaatatttattttaatagaaagtagtttacattt
caa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036266XLOC_036266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057529-exon-scaffold_291-1491911889:6862..7114TCONS_00057529-exon-scaffold_291-1491911889:6862..7114Clytia hemisphaericaexon
TCONS_00057529-exon-scaffold_291-1510915933:6862..7114TCONS_00057529-exon-scaffold_291-1510915933:6862..7114Clytia hemisphaericaexon
TCONS_00057529-exon-scaffold_291-1575043694:6862..7114TCONS_00057529-exon-scaffold_291-1575043694:6862..7114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:6862..7114 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.50663	4.27868	9.10791	9.72073	3.48882	0	0	1.76036	0.616235	3.05323	2.22265	0.487028	1.45905	0	2.49147	0.445621	4.39175	2.2507	2.3321	2.44037	3.53521	4.13845	9.22318	6.86062	0	2.80288	6.01638	6.42084	8.92829	7.44261
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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