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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057527 ID=TCONS_00057527|Name=TCONS_00057527|organism=Clytia hemisphaerica|type=transcript|length=1280bp
CTGACAAAGGTTTTCCAGATCTCCAATGTCAACCGCTCGTTATTCTCATC
TCCAACGTCACCAGTCATCATCAGATTCAATACAAACTCCACAAAACCAT
TTGCATCCAAATCCATGACCAAACACAAATGTTTATCCAATACACGGCAA
TGATACTGTGGTGATGTCAACAAACTTTCCAAGGACTTCAACTCCTCTGT
CATGTTGATTGGCTTCTTCTGGTGAACCATCTTGGTTGTGGTGATGTTTG
GCTTACTATCGGTGAAAAAGGCTTTAATTTTGTCTTCAGTTGACACGTAC
TGTGTCAGCAATGTCAAAATACGCTTATCTAGTTTCTTCGTGCTTGAGTG
TTGGAGTAATGTCCGAATGCGCTCTGTTAACTTCTTTTTGATACTATACG
GGAATGATTTGTTTCCAAAAACAGCTAATAGCAACACAGGATCTTTGATC
ACATCGAccagataaaagatttcagaAAGATCTATGACCTCGTCCTCATT
TTCATGTAACTCTTTGAGACGTGTTGCAAGTGAGATAGCTGTTTCAGCAG
AGAAATTCCGGAGCTGCCACATATGAAGGATGTTGAAAAGCGATCGCATT
GGAAAATCTTCACTCCGAGAAACACCCTGTTTAATTCGCAATTTCCTGGA
TCTGTTATTCACCCTCTTGTGTTCCGAATCAAACACATCGAGCGCAAAGT
CCGGATCCGTGACTTTACCGGAATCCACCATAGACTTGTTATCCGGTACA
TCCTCATTTAACACTTGGTGTTGCTTGGCTAAGATCTCTTTCAACTGCTC
AACGATCGGTTTGGGACGGATATTCCAAATTCCGGACCGATTCCAAACGC
CAGCTGCCGGATAGTTTCCTTTCCGTATCCAAATCAAAGGAGCACCAGAC
CTGAAAGTTTGTGTTTTCCATAGAAACAAACCACCTTGGTTTTCGTAAAT
ATTGACCGTGCCGTCTGACATTAAAAGTAGTAACATTCGTTGGAGTGGAT
AGAATTTGGAGATTTGTTTTGCAAAATTATCTTTCCCCTCTGAAGGTTCT
TCAAGAGTACACAACAAAGAACATTCAACACCATACTTGGAAACATAGAT
GGAATAGACATTCAAATCATTTTGTAACACAACAAGTTCTTTGGACGTGG
GATGAGTGGCTTGTAATAAGATTTTACTCTCGAAGTTTGTTCGGTTGATC
CAGAGGTAGAGACAATCGCGTACAATGGTTTGATAATCACTTGTGGTAGC
GATGTGATGATGGTTATTGAATTCATCACC Run BLAST on NCBI transcript from alignment at scaffold_291:179357..180690- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057527 ID=TCONS_00057527|Name=TCONS_00057527|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at scaffold_291:179357..180690- (Clytia hemisphaerica)
CTGACAAAGGTTTTCCAGATCTCCAATGTCAACCGCTCGTTATTCTCATC
TCCAACGTCACCAGTCATCATCAGATTCAATACAAACTCCACAAAACCAT
TTGCATCCAAATCCATGACCAAACACAAATGTTTATCCAATACACGGCAA
TGATACTGTGGTGATGTCAACAAACTTTCCAAGGACTTCAACTCCTCTGT
CATGTTGATTGGCTTCTTCTGGTGAACCATCTTGGTTGTGGTGATGTTTG
GCTTACTATCGGTGAAAAAGGCTTTAATTTTGTCTTCAGTTGACACGTAC
TGTGTCAGCAATGTCAAAATACGCTTATCTAGTTTCTTCGTGCTTGAGTG
TTGGAGTAATGTCCGAATGCGCTCTGTTAACTTCTTTTTGATACTATACG
GGAATGATTTGTTTCCAAAAACAGCTAATAGCAACACAGGATCTTTGATC
ACATCGATCAAATAAAAGATTTCAGAAAGATNCAGTAAAACAGGATCTTT
GATCACATCGACCAGATAAAAGATTTCAGAAAGATCTATGACCTCGTCCT
CATTTTCATGTAACTCTTTGAGACGTGTTGCAAGTGAGATAGCTGTTTCA
GCAGAGAAATTCCGGAGCTGCCACATATGAAGGATGTTGAAAAGCGATCG
CATTGGAAAATCTTCACTCCGAGAAACACCCTGTTTAATTCGCAATTTCC
TGGATCTGTTATTCACCCTCTTGTGTTCCGAATCAAACACATCGAGCGCA
AAGTCCGGATCCGTGACTTTACCGGAATCCACCATAGACTTGTTATCCGG
TACATCCTCATTTAACACTTGGTGTTGCTTGGCTAAGATCTCTTTCAACT
GCTCAACGATCGGTTTGGGACGGATATTCCAAATTCCGGACCGATTCCAA
ACGCCAGCTGCCGGATAGTTTCCTTTCCGTATCCAAATCAAAGGAGCACC
AGACCTGAAAGTTTGTGTTTTCCATAGAAACAAACCACCTTGGTTTTCGT
AAATATTGACCGTGCCGTCTGACATTAAAAGTAGTAACATTCGTTGGAGT
GGATAGAATTTGGAGATTTGTTTTGCAAAATTATCTTTCCCCTCTGAAGG
TTCTTCAAGAGTACACAACAAAGAACATTCAACACCATACTTGGAAACAT
AGATGGAATAGACATTCAAATCATTTTGTAACACAACAAGTTCTTTGGAC
GTGGGATGAGTGGCTTGTAATAAGATTTTACTCTCGAAGTTTGTTCGGTT
GATCCAGAGGTAGAGACAATCGCGTACAATGGTTTGATAATCACTTGTGG
TAGCGATGTGATGATGGTTATTGAATTCATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057527-exon-scaffold_291-1575043694:180239..180690 | TCONS_00057527-exon-scaffold_291-1575043694:180239..180690 | Clytia hemisphaerica | exon |
| TCONS_00057527-exon-scaffold_291-1575043694:179357..180184 | TCONS_00057527-exon-scaffold_291-1575043694:179357..180184 | Clytia hemisphaerica | exon |
| TCONS_00057527-exon-scaffold_291-1510915933:180239..180690 | TCONS_00057527-exon-scaffold_291-1510915933:180239..180690 | Clytia hemisphaerica | exon |
| TCONS_00057527-exon-scaffold_291-1510915933:179357..180184 | TCONS_00057527-exon-scaffold_291-1510915933:179357..180184 | Clytia hemisphaerica | exon |
| TCONS_00057527-exon-scaffold_291-1491911889:180239..180690 | TCONS_00057527-exon-scaffold_291-1491911889:180239..180690 | Clytia hemisphaerica | exon |
| TCONS_00057527-exon-scaffold_291-1491911889:179357..180184 | TCONS_00057527-exon-scaffold_291-1491911889:179357..180184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_291 | supercontig | scaffold_291:179357..180690 - |
Blast
The following BLAST results are available for this feature:
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