TCONS_00057525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057525
Unique NameTCONS_00057525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057525 ID=TCONS_00057525|Name=TCONS_00057525|organism=Clytia hemisphaerica|type=transcript|length=631bp
NTATTGCAGATTACAAAGACCAGCATCGTAAACGCTGTGGCTTCAGAAAC
GTCAGATGTCGTCTGTGTAATCAAAAAGTCGATCATCAAGAAAAGGAGGG
GCACAAGTTGACGTGTACACATCGTTTGGTTAATTGTATAACATGTGGTG
CCCAGTACAGCTTCATCAACAAAAAGAAACATGAAGACGAAGAATGCAAG
TTACCTTGTGATTATTATCAATATGGTTGCCATGAAAAGGTATGCAAACC
AAATATGGAGCGACACCTTGCCAATTCAGCAAGACGTCATATTGAACTTG
TTAAAGCTCACTATGAAAAACTTATTTCTGTGAAGGATAAGAAGATCACA
GAACTTAACACGACAGTCAACTTACAGAGTGAACACATTGCAGAACTAAC
AACGCAGCTCGAAGTAAATAAAATACCCATGGCAACCAATTCAAGTATTA
GCTCACCAACAGTGAAACCGGCAGTTAAAacgaaatcttttctgaaaacc
cCAATTGGacttttcaaaaagaaagatgACAAGCAACAACAACAAGCAAC
AAATTCCCTTCAAACAACTTCAGCCAAATGGGATGGAAAGAAAATTCATG
AGATAGTGTTCAAGGGTAAAACGCTGACATT
Run BLAST on NCBI

transcript from alignment at scaffold_291:76666..82253-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057525 ID=TCONS_00057525|Name=TCONS_00057525|organism=Clytia hemisphaerica|type=transcript|length=5588bp|location=Sequence derived from alignment at scaffold_291:76666..82253- (Clytia hemisphaerica)
NTATTGCAGATTACAAAGACCAGGTAGGTATTTCATATTTCCTTATTGCT
TGCGATTTAGAAAAAACTTTTCTTGGGTTATCAGTAAAATAACGAATGAA
AAAATGAGTTAGACATATGTATTTTGTGCATAGCATCGTAAACGCTGTGG
CTTCAGAAACGTCAGATGTCGTCTGTGTAATCAAAAAGTCGATCATCAAG
AAAAGGAGGGGCACAAGTTGACGTGTACACATCGTTTGGTTAATTGTATA
ACATGTGGTGCCCAGTACAGCTTCATCAACAAAAAGGTACTTCTTTTATT
TTTCAGTTTTGTTTTTTTTATAAAAACACCCCTGTCTCAGTGACTTAGTG
AAAGCCACATGGTCAAGCAGTCGAATTGCCAAAACATTTTTGTTTTTCTC
GATAATTACTTAATTAAAAGATATTTCTTCATCTGGATTTGTAACTTTTC
AGAAACATGAAGACGAAGAATGCAAGTTACCTTGTGATTATTATCAATAT
GGTTGCCATGAAAAGGTGAATCTTCTAATACTCCCAAGTATCTAATAAAA
GGGGGGGGGGTCGGGGTTGAAATAAACTGGAGATTTGTAAAAAATATTTA
AAATTGATAAGCAGGGCGTAATTACCGGAAGATCGGAAATTGCACTTTAA
AAAGTTCCAAAGTAAAGTAATTGTATACTGAAACAGGATACTTAGAGCAG
AATTTCTTCTTTTGACAGCTGAAAATATTTCCAAAATCAATAAACAGGGG
ACGTTTATTAAGCACCTAAGATTCTTAAGTTGGTTGTGGTATTTAATATT
TGCTGATCACTTCGCTGTTGGACTTGCCCGGAGGTCCCATAAATTAATTG
CTCTTCGTTCGTTTATTTGTTAGTTTGTTTTTACACATTATCACTGAAAA
GGGGAATAATTCAGGAAGCAGGATAAATTTGAAAACGAGTTTAGTTCGGG
GCGGAGTAAACAGTGGCGGGGGGGGGTNTTATCACTGAAAAGGGGAATAA
ATCAGGAAGCAGGATAAATTTGAAAACGAGTTTAGTTCGGGGCGGAGTAA
ACAGTGGCGGATGTGTTTACAGTGTATTGTTGTTCCAAAGCTCTACCGCC
ATTATTTTTCCCCTAAACCACACTGACGCCCCGACTCTGCAGATATATTT
TCTTGCGTTTACTGAACCTCAAAACGGACAATAGCATCGTCTAGTTTTTA
CCCAGAATTTGACGGAGACCGGCTGTTGAAAAAAAATCTTTTCCGGTCTT
CCGTTCCTGAAATGTCTCTCAAAGTCTTTAAGGGATTTTCTCAGGATTAT
CTTTTTAGCTTTTCCGGATGTTTTGTACATTATTGCGATAGTAATGCCAT
AAATGTGTCGAAAACAGTTTTCAGAAAAAAATCTGTTCATAGGAAAAGGT
ATTTAATGATAATGCCAAAAGTTTTTAATCGTTTGATTTCCAACGAAATT
TTTTTTCAACCCAGAACACCTTAGACTACTGGCATCCACATAGGACTTTT
GTTTTTGGTACATGATGTTTTTCTTTTGGTTCAACACAATATTGCGAATT
GAGATTATAAGTTTTAGAAAAGCCAACTCATTGAAAAGATTTCTTGAATT
CCAAAGTCAATCGAATGATGACAGAAAATCATTTTTTCAGCGTCTTTCTT
GAAGGGAAATCTGCACAGATTTGTACATTCTTGGATAAAAAATACTAAGT
AAAGCTTTGAATCATAACTTTCTAGTTTAGCATGAATTGACGCTGAGAAA
ATGTTCAAAAACTAAAGGGTCCGCATATCTTTGAGAGAGACTTTCACTCC
CTTTCTCAAGTTATTAACATTTTTCATGATTTTTTGTACAATGAAGCAAA
TTTGTAATTCCCAAAACAATGAAGCCAAATTTCCGTGAAAAATTATTTTT
ATCGAGATTTTCCCATTATTCTTTCATGATTTTCTTTGAATTTTAAATTT
AATATTTTCTGCTCATTAGCCGGAGAGGTCCATCAAACTACTATGATTAA
ACTATCACTTGGTTTGTTTTATTTCCAGGTATGCAAACCAAATATGGAGC
GACACCTTGCCAATTCAGCAAGACGTCATATTGAACTTGTTAAAGCTCAC
TATGAAAAACTTATTTCTGTGAAGGATAAGAAGATCACAGAACTTAACAC
GACAGTCAACTTACAGAGTGAACACATTGCAGAACTAACAACGCAGCTCG
AAGTAAATAAAATACCCATGGCAACCAATTCAAGGTAAACAAAGCACTAT
ATGTGTTAGCTTTTGTAATTCAGTTTTTCATTTTTTCTGAAACTATTTCT
AACTGCCTCGAAAAAAGTTTACTTCTTCATTATTTCAGCTAAAAAATCTC
ATATAGGTGACCTTGAGCTTGAGTTATTTGAAATTGCGCTAGCGTATTAA
AGTCCTAGTAAATCCATAAATTACTTAGAGCTCTCTTAATTCTAAGATTT
CAAACAATTTTATTATGATTACACATGGAACACACCAACTCTTAGACTCT
TTCAACTATCTTAGTTCCCCCAGGTCTAGACGAGAGTGATCTAGTATGCC
GTAGCAAGATTTACACTCCTATTATATCTCTAAAAGGACCACAAACCGTT
AATGGATATCAGCAAACAAGATAATTTCCTAAATTCTCAAATATTCTTGA
AAATAGGTGTAAATTTCCTCATTTTTCCCTTAAAACAAGAACAACTTAAG
GGCTCTGACCATAGTCAGAAAATTGATTTTAGTATCTGAACATGAAAGTT
ATGTTTTAGATTCTTAAACACTTTTAACAAAGAATTGCCTTTATAAATTG
CTTTTTAATCAAATCCCTTAAGAGTAATTAAGAACTTAATTGCAAAAATG
ACGTTATGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGGTTACATCAGTCAGAAAA
CACATTTTAAACACGGCAATTATGAAAAATTCACTATGGTCAGAGCCCTT
AAGAATAATCTAAAGCTCGAAGTGCCAAAAAAAAAACACTTACTGAGGCT
TCACAAAAATTCACTCAATTTTATAAAAAGAAGACAAATCAATTGATTTT
ATGACACCCTCTTCTTCTAGACCTGGTGGAAACTCTTCCCAATGAAAAAA
GGCAAAAATATGGTGATTTCCCTGTGGATAATTATAATCCAATGTTTGTC
CCTACTGAAAATAATCGATTGAATAAATCCTCACCGCAAAATATTGTCCT
ATTTTTCCATCCCTACTGAAATTTTCTTACTTTAAAATAATAGAATTAAC
TCCCCAGTCGCAAAGAACATGGGATTAACAAGCCCCAATTTTTTTACCCC
ACTGGCTGAAAAAATTCCACCGGTTCTGTGATGGTCGAATGAGTGATATA
CAATATTATCAATCCAACTAATTTAGCTGGTGTCAACGACATTCATTTCA
AATTATCTCCCATTATCTTAACCTAACTTTTTCATCTATTAGTATTAGCT
CACCAACAGTGAAACCGGCAGTTAAAACGAAATCTTTTCTGAAAACCCCA
ATTGGACTTTTCAAAAAGAAAGATGACAAGCAACAACAACAAGCAACAAA
TTCCCTTCAAACAACTTCGTGAGTATTTAGTTCTTTTAAAGCTTTGGAGA
TCATTATTGTTTACTTAAGACCTCGTTCCTTTAGGTAGGAAGAAGCCCCT
TAAGTGCTTTTGGTGAAATTTAATGGAAATAATTTTTCATCGAAATAGAA
ATACTTTGGCGGAATGAACATAATAGAATTAATTGTTGAAACCCTAAATA
TTCTAGAGTGAAGAAATTCGCTGGCAAAACGAAATTCGTCACTTACAGTG
TACGGCCCCTAATATGTAGGTTGAATCTAAAATTTTTCTAGAGATCCTAG
TAAAAAATATTGGAAAGGCAAGATAGAAAACTTCAAAAATGCAGAAATAG
CAATTTTTAGTGGCTGACGTCATTAAACATTTTTTAACAAAAATGTTACT
TTGAAATCAGTTCTTGTTAGTGTATTTTCTTGGTGGTGTATTTTGTCAAA
ATTCTATGATTATCAACGCTTTACACAATAAGAAGATATCGGACTTTGAA
AGAATTTTTTTACCCATTCTCTACACAAAAATGCTAAATTTTGCTGTTTT
TGCTCTGATTCAGCAATAGCTTTTGAAAATTATATGAATTTTCTTTACAA
AAGTATTAGGTTTCAATTTTCACATTCAGATTTTTCAGACCTTGAAATTC
TGATTAAGGGGCCCCGAACATGATGGTTAGCTTCAAGAAGCTGTTTTTTT
CATTGGCTGCATTCAAAGATAACTTTGTTTGGGTTTCCTTAGCTATTGGA
CATAGCTCTCCTATAATTTCTATGCCCTCTCCCTATTAAATACGGTAATC
AGAAGGGTGTTTTACTAAAAATACTGATTTTCAAAAATGTAATGTAGAAA
ATTGAAAATTAAATGGTGATAACTTTCAGTATATTTCGGATCCCGAAATC
GTTCAAAATATTTTTTTTTTCTTTTTCCGTAAAATTCTCAGACTGGAAGA
GTTTTGGATATTTTTGACAGTGGAATTTTCTTCTTTGCCTGTCTTATTTC
TTTCTGCAAACTTTATTGTTTAATTTAGAGCCAAATGGGATGGAAAGAAA
ATTCATGAGATAGTGTTCAAGGGTAAAACGCTGACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036263XLOC_036263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057525-exon-scaffold_291-1575043694:82231..82253TCONS_00057525-exon-scaffold_291-1575043694:82231..82253Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:81968..82120TCONS_00057525-exon-scaffold_291-1575043694:81968..82120Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:81739..81801TCONS_00057525-exon-scaffold_291-1575043694:81739..81801Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:80020..80225TCONS_00057525-exon-scaffold_291-1575043694:80020..80225Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:77736..77861TCONS_00057525-exon-scaffold_291-1575043694:77736..77861Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:76666..76725TCONS_00057525-exon-scaffold_291-1575043694:76666..76725Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:82231..82253TCONS_00057525-exon-scaffold_291-1510915933:82231..82253Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:81968..82120TCONS_00057525-exon-scaffold_291-1510915933:81968..82120Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:81739..81801TCONS_00057525-exon-scaffold_291-1510915933:81739..81801Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:80020..80225TCONS_00057525-exon-scaffold_291-1510915933:80020..80225Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:77736..77861TCONS_00057525-exon-scaffold_291-1510915933:77736..77861Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:76666..76725TCONS_00057525-exon-scaffold_291-1510915933:76666..76725Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:82231..82253TCONS_00057525-exon-scaffold_291-1491911889:82231..82253Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:81968..82120TCONS_00057525-exon-scaffold_291-1491911889:81968..82120Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:81739..81801TCONS_00057525-exon-scaffold_291-1491911889:81739..81801Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:80020..80225TCONS_00057525-exon-scaffold_291-1491911889:80020..80225Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:77736..77861TCONS_00057525-exon-scaffold_291-1491911889:77736..77861Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:76666..76725TCONS_00057525-exon-scaffold_291-1491911889:76666..76725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:76666..82253 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.430463	0.245946	0	0.0931275	1.81398	0.896836	0.638453	1.41664	1.34605	0.833369	1.12483	0.824528	2.07906	2.415	0.174382	0.0803517	0	0	4.55411	2.86786	1.41615	0.787687	0	1.19798	0.820014	3.9323	1.80694	1.00689	0.653182	0.475248
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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