TCONS_00057523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057523
Unique NameTCONS_00057523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057523 ID=TCONS_00057523|Name=TCONS_00057523|organism=Clytia hemisphaerica|type=transcript|length=1485bp
CACAATAGCAAATGCATCCAAACACTCGTACATGACAGCCTGTTCCACTG
CTTTGAAAAAGCTAATCCTACAATGCCTTGTGATATGGTTGACGAGACTG
TTGGTGCCCAACGTCAGGAAGTGTGTCGTCTTCACTGCTGTGATATCCGG
ATTGCAGAATCATTTTCCAACGCCAGCAAAAATCTGACAAAATCTAAACT
TGTCCATATTTATGACGGTATGGGGACATTAGACGAGGATCTTCCTGAGG
CACCGCCATCATCAAACCTATCGAAGGCGGCAGACAAAATATCTGAATTG
ATGAAGAAGCTTAACTATCGATTGTACCGTGGCATGGTTTATTTCAAACC
TGAAGAAGCAAAATTCACATTCAAACTTCTTTGCGATCCTGAAGAATTTC
TCTGCAAAGTACAAACGAACGCAGGACTGAAGGAATTAGTATTGGCAAAC
AATGCAAATCTTTTGAAGCATATGTCTAGCATTCATACTGAACTCTTTCC
TAAAATCAAGATCGACTACGATTTCATCGAGGTGAAGAACAATACGTATC
TAAAACTTTCAAGTCGAGCATACGTCAGTTGCCCCTTTACCGATGACGAG
TTTGGCGTCATAAGTCCACGCAGCTTTCACGATTTTGATCCCTATCGGAC
GAATTGCCACGGAGGTTTCGAGCATTGATTTCCAAGGTTAGAAGACCAAG
TCAAATTGGCCCACAGAATTTACCAATGCCTACTTTGCTTCCAGCTACCA
GACAAGACAAGAAAGCTAACACTAATTGGAAAAATCGACTCATGCAAAAC
GTCAATTATGAACTTCTTTTCCGCATTAATACCCGAAGAAAAGATCTCTA
TTTTGACAAAGGAAACCACATTTGGTCTGTCCATGATAACCGATGATACA
GAGCTGCTTTATGTTGATGAATGGACGCGTGAGATGACACCCCCAGACAT
TGCAAAAATGCTGTTCCAAAATGGCCGGTTTCCTCAAGCCATCAAGTTCA
AGTCACCAAAGATGAGAAAGATGGAAGCTGGTGTCTTCTTGACATGTAAT
GCGATGCCAAAATTTGGTAAACAACAAGAGGCTGTGGAAAGGAGATTGGC
AATGTTTCATACCCGACCACTTGAAAATATAGACCCATCTGCACCATCTT
GGATTAAGTCTAATGCGATGAACTGCCTAACATACTTAGTAAACCTAATC
AATTCAAACCTCGACGTCTTGGACGAAGATGATCTTTCTTACACTTTACC
TAAAGACGTAAGATGTGCAAACACCATGCTGATGGACAAGATAGACGAAA
AGAAACTCGATGCTATTCAAAAGTGCGTTGTCGACAAAGATAAGTCCGTT
GAACTTGCCCAACCATTGACTGGATATGACATCTTTCGAATTGAAAAACC
ATGCGATGACGatcAATCAAAACAACCTGACGTGGATAATGAAAGTGATG
TGGACATGTCAAGGTCTATCACTTTGAAAACGAAT
Run BLAST on NCBI

protein sequence of TCONS_00057523-protein

>TCONS_00057523-protein ID=TCONS_00057523-protein|Name=TCONS_00057523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MNFFSALIPEEKISILTKETTFGLSMITDDTELLYVDEWTREMTPPDIAK
MLFQNGRFPQAIKFKSPKMRKMEAGVFLTCNAMPKFGKQQEAVERRLAMF
HTRPLENIDPSAPSWIKSNAMNCLTYLVNLINSNLDVLDEDDLSYTLPKD
VRCANTMLMDKIDEKKLDAIQKCVVDKDKSVELAQPLTGYDIFRIEKPCD
DDQSKQPDVDNESDVDMSRSITLKTN
Run BLAST on NCBI

transcript from alignment at scaffold_291:55654..59329-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057523 ID=TCONS_00057523|Name=TCONS_00057523|organism=Clytia hemisphaerica|type=transcript|length=3676bp|location=Sequence derived from alignment at scaffold_291:55654..59329- (Clytia hemisphaerica)
CACAATAGCAAATGCATCCAAACACTCGTACATGACAGCCTGTTCCACTG
CTTTGAAAAAGCTAATCCTACAATGCCTTGTGATATGGTTGACGAGACTG
TTGGTGCCCAACGTCAGGAAGTGTGTCGTCTTCACTGCTGTGATATCCGG
ATTGCAGAATCATTTTCCAACGCCAGCAAAAATCTGACAAAATCTAAACT
TGTCCATATTTATGACGGTATGGGGACATTAGACGAGGATCTTCCTGAGG
CACCGCCATCATCAAACCTATCGAAGGCGGCAGACAAAATATCTGAATTG
ATGAAGAAGCTTAACTATCGATTGTACCGTGGCATGGTTTATTTCAAACC
TGAAGAAGGTAACTTAATTATTAGGCACTTTGAAATAGTTACATGGCTGT
GAATTTCGTAAATTTTTAGGAGTAATTGAATAATTTCAACATAACGTTTT
TCTTGATATTAAACTGTTTGAGTTTCCTATTGATTTGAAAAAATTTGAAC
TTTGTAAAGTGGAAAAATCTACATTTTTACAGCTTTTCCTTTTTTTCTTC
ACCGACAGCAAAATTCACATTCAAACTTCTTTGCGATCCTGAAGAATTTC
TCTGCAAAGTACAAACGAACGCAGGACTGAAGGAATTAGTATTGGCAAAC
AATGCAAATCTTTTGAAGCATATGTCTAGCATTCATACTGAAGTAAGTAC
TTTAATTTTGATAAAATGGTTAGTGTACTAAAAACTTTAGGCTTGAATTC
GTTAACTCGTAATCTTTTACAACATGACCATCAGATTTTTTCTTTCATTT
TTAAGTTTATAAATTGAAAAGTTCAACTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTAGTCCATTTCATAGACCGTTAGACC
GCCAGTAGGCCGTCTCATTTATGAGCATTTGTACTGAAAGACCGTAGGCC
GTCAATTTTAGACTTCCAAAGGTGTTCTTTTCGTTATTTTCATCTATGCC
TGTTTTTAGAATTCTTTGAAAAGTAGCTCAACTGTGGTAGTCCATTTCAT
AGACCGTTAGACCGCCAGTAGGCCGTCTCCTTTATGAGCATTTGTACTGA
AAGACCGTAGGCCGTCAATTTTAGACTTTCAAAAGGTGTTCTTTTTTTTG
GTTATTTTCATCTATGACTGCTTTTAGAATTCTTTGAAAAGTAGTTCAAC
TGTGGTAGTCCATTTCATAGACCGTTAGACCGCCAGTAGGCCGTCTCATT
TATGAGCATTTGTACTGAAAGACCGTAGGCCGTCAATTTTAGACTTTCAA
AAGGTGTTCTTTTCGTTATTTTCATCTATGACTGTTTTTAGAATTCTTTG
AAAAGTAGTTCAACTGTGGTAGTCCATTTCATAGACCGTTCGGCCGTCAG
TAGGCCGTCTCATTTATGGGCATTTGTACTGGCAGACCGTAGGCCGTCAA
TTTTACACTTTCAAAAGGTGTTCTTTTCGTTATTTTCATCTATGACTGTT
TTTAGAATTCTTTGAAAAGTAGCTCAACTGTGGTAGTCCATTTCATAGAC
CGTTAGACCGCCANTTCTTTTCGTTATTTTCATCTATGACTGTTTTTAGA
ATTCTTTGAAAAGTAGCTCAACTGTGGTAGTCCATTTCATAGACCGTTAG
ACCGCCAGTAGCCCGTCTCATTTATGAGCATTTGTACTGAAAGACCGTAG
GCCGTCAATTTTAGACTTTAAAAAGGTGTTCTTTTGGTTATTTTCATCTA
TGACTGCTTTTAGAATATTTTGAAAAGTAGTTCAACTGTGGTAGTCCATT
TCATAGACCGTTAGACCGCCAGTAGGCCGTCTCATTTATGAGCATTTGTA
CTGAAAGACCGTAGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGTCTCATTTATGAGCATTTGTACTGGAAGACCGTAGGCCGT
CAATTCTAGACTTTTTATGGACTTGAGACGGATTGAAAACATACTAATTT
TTCCAATTTTCTATTTCAGCTCTTTCCTAAAATCAAGATCGACTACGATT
TCATCGAGGTGAAGAACAATACGTATCTAAAACTTTCAAGTCGAGCATAC
GTCAGTTGCCCCTTTACCGATGACGAGTTTGGCGTCATAAGTCCACGCAG
CTTTCACGATTTTGATCCCTATCGGACGAATTGCCACGGAGGTTTCGAGC
ATTGATTTCCAAGGTTAGAAGACCAAGTCAAATTGGCCCACAGAATTTAC
CAATGCCTACTTTGCTTCCAGCTACCAGACAAGACAAGAAAGCTAACACT
AATTGGAAAAATCGACTCATGCAAAACGTCAATTATGAACTTCTTTTCCG
CATTAATACCCGAAGAAAAGATCTCTATTTTGACAAAGGAAACCACATTT
GGTCTGTCCATGATAACCGATGATACAGAGCTGCTTTATGTTGATGAATG
GACGCGTGAGATGACACCCCCAGACATTGCAAAAATGCTGTTCCAAAATG
GCCGGTTTCCTCAAGCCATCAAGTTCAAGTCACCAAAGATGAGAAAGATG
GAAGCTGGTGTCTTCTTGACATGTAATGCGATGCCAAAATTTGGTAAACA
ACAAGAGGCTGTGGAAAGGAGATTGGCAATGTTTCATACCCGACCACTTG
AAAATATAGACCCATCTGCACCATCTTGGATTAAGTCTAATGCGATGAAC
TGCCTAACATACTTAGTAAACCTAATCAATTCAAACCTCGACGTCTTGGA
CGAAGATGATCTTTCTTACACTTTACCTAAAGACGTAAGATGTGCAAACA
CCATGCTGATGGACAAGATAGACGAAAAGAAACTCGATGCTATTCAAAAG
TGCGTTGTCGACAAAGATAAGTCCGTTGAACTTGCCCAACCATTGACTGG
ATATGACATCTTTCGAATTGAAAAACCATGCGATGACGGTAATTACATTT
TCTACCTTTTCAAACTTTCAATATCCTGGGAGAAGATTCTATTCGCAAAG
GGAACTACTAAAGCTATAAGATGAAACTTAAAGTACTTTTTTTCTTCTTC
AGATCAATCAAAACAACCTGACGTGGATAATGAAAGTGATGTGGACATGT
CAAGGTCTATCACTTTGAAAACGAAT

Coding sequence (CDS) from alignment at scaffold_291:55654..59329-

>TCONS_00057523 ID=TCONS_00057523|Name=TCONS_00057523|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_291:55654..59329- (Clytia hemisphaerica)
ATCAATCAAAACAACCTGACGTGGATAATGAAAGTGATGTGGACATGTCA
AGGTCTATCACTTTGAAAACGAATATGAACTTCTTTTCCGCATTAATACC
CGAAGAAAAGATCTCTATTTTGACAAAGGAAACCACATTTGGTCTGTCCA
TGATAACCGATGATACAGAGCTGCTTTATGTTGATGAATGGACGCGTGAG
ATGACACCCCCAGACATTGCAAAAATGCTGTTCCAAAATGGCCGGTTTCC
TCAAGCCATCAAGTTCAAGTCACCAAAGATGAGAAAGATGGAAGCTGGTG
TCTTCTTGACATGTAATGCGATGCCAAAATTTGGTAAACAACAAGAGGCT
GTGGAAAGGAGATTGGCAATGTTTCATACCCGACCACTTGAAAATATAGA
CCCATCTGCACCATCTTGGATTAAGTCTAATGCGATGAACTGCCTAACAT
ACTTAGTAAACCTAATCAATTCAAACCTCGACGTCTTGGACGAAGATGAT
CTTTCTTACACTTTACCTAAAGACGTAAGATGTGCAAACACCATGCTGAT
GGACAAGATAGACGAAAAGAAACTCGATGCTATTCAAAAGTGCGTTGTCG
ACAAAGATAAGTCCGTTGAACTTGCCCAACCATTGACTGGATATGACATC
TTTCGAATTGAAAAACCATGCGATGACGATCAATCAAAACAACCTGACGT
GGATAATGAAAGTGATGTGGACATGTCAAGGTCTATCACTTTGAAAACGA
ATATGAACTTCTTTTCCGCATTAATACCCGAAGAAAAGATCTCTATTTTG
ACAAAGGAAACCACATTTGGTCTGTCCATGATAACCGATGATACAGAGCT
GCTTTATGTTGATGAATGGACGCGTGAGATGACACCCCCAGACATTGCAA
AAATGCTGTTCCAAAATGGCCGGTTTCCTCAAGCCATCAAGTTCAAGTCA
CCAAAGATGAGAAAGATGGAAGCTGGTGTCTTCTTGACATGTAATGCGAT
GCCAAAATTTGGTAAACAACAAGAGGCTGTGGAAAGGAGATTGGCAATGT
TTCATACCCGACCACTTGAAAATATAGACCCATCTGCACCATCTTGGATT
AAGTCTAATGCGATGAACTGCCTAACATACTTAGTAAACCTAATCAATTC
AAACCTCGACGTCTTGGACGAAGATGATCTTTCTTACACTTTACCTAAAG
ACGTAAGATGTGCAAACACCATGCTGATGGACAAGATAGACGAAAAGAAA
CTCGATGCTATTCAAAAGTGCGTTGTCGACAAAGATAAGTCCGTTGAACT
TGCCCAACCATTGACTGGATATGACATCTTTCGAATTGAAAAACCATGCG
ATGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036261XLOC_036261Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057523-proteinTCONS_00057523-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057523-exon-scaffold_291-1575043694:58972..59329TCONS_00057523-exon-scaffold_291-1575043694:58972..59329Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1575043694:58638..58771TCONS_00057523-exon-scaffold_291-1575043694:58638..58771Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1575043694:55842..56760TCONS_00057523-exon-scaffold_291-1575043694:55842..56760Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1575043694:55654..55727TCONS_00057523-exon-scaffold_291-1575043694:55654..55727Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1510915933:58972..59329TCONS_00057523-exon-scaffold_291-1510915933:58972..59329Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1510915933:58638..58771TCONS_00057523-exon-scaffold_291-1510915933:58638..58771Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1510915933:55842..56760TCONS_00057523-exon-scaffold_291-1510915933:55842..56760Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1510915933:55654..55727TCONS_00057523-exon-scaffold_291-1510915933:55654..55727Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1491911889:58972..59329TCONS_00057523-exon-scaffold_291-1491911889:58972..59329Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1491911889:58638..58771TCONS_00057523-exon-scaffold_291-1491911889:58638..58771Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1491911889:55842..56760TCONS_00057523-exon-scaffold_291-1491911889:55842..56760Clytia hemisphaericaexon
TCONS_00057523-exon-scaffold_291-1491911889:55654..55727TCONS_00057523-exon-scaffold_291-1491911889:55654..55727Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:55654..59329 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13925	1.78063	0.179964	0.0806977	0.0982417	0.116448	0.214478	0.417217	0.428725	0.354438	0.478874	0.325662	0.188748	0.118222	0.363123	0.307831	0.493489	0.16103	0.116161	0.644068	0.385738	0.467522	0.989532	0.817958	0.62472	0.566169	0.261543	0.295657	0.987699	0.982024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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