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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057522 ID=TCONS_00057522|Name=TCONS_00057522|organism=Clytia hemisphaerica|type=transcript|length=508bp
CAGTGATGCACTCATTGGTTTCATTTCCTCATCTACCGAACAAGACTCCG
ATATAGAACCTCCTCGGAAACGAGCCCGTCACAGATGGATCGGAAGTCCA
GTTCCAACAGAAGAACCAGAGACGGCCACAATCAAAGATCTTCTGAACAG
CCTTATTGAACGTGTTTCAGATCTTCAAAATGGTGACGTCATGGCATCAC
CAAGTACGTCTGAAAAAGCAAACAATATGGGTACTACATTGAATGtggTC
GAAAGCCCCATCAAGCGTAAAGAATTCATCAACTCGTGTAAACGCTTCAA
GATCGAGGACGTCAACCAGCTCGAATACTGGCAATGCGTAAAGCACTATC
TGTTCAACAATCTTGGGTTCAAACGTTTGCATGATCCTGTCGCACATTCT
TTGTTCCGTACAAATGAAAAGTACGTTGCATCCTTAAAATCACCAAGACC
ACCAACCATAGCAAATCCATTTGAAGATGCAGCCTTTCTGGTTCTAAGTA
AGCCGAGA Run BLAST on NCBI protein sequence of TCONS_00057522-protein >TCONS_00057522-protein ID=TCONS_00057522-protein|Name=TCONS_00057522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
SDALIGFISSSTEQDSDIEPPRKRARHRWIGSPVPTEEPETATIKDLLNS
LIERVSDLQNGDVMASPSTSEKANNMGTTLNVVESPIKRKEFINSCKRFK
IEDVNQLEYWQCVKHYLFNNLGFKRLHDPVAHSLFRTNEKYVASLKSPRP
PTIANPFEDAAFLVLSKPR Run BLAST on NCBI transcript from alignment at scaffold_291:54660..55524- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057522 ID=TCONS_00057522|Name=TCONS_00057522|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at scaffold_291:54660..55524- (Clytia hemisphaerica)
CAGTGATGCACTCATTGGTTTCATTTCCTCATCTACCGAACAAGACTCCG
ATATAGAACCTCCTCGGAAACGAGCCCGTCACAGATGGATCGGAAGTCCA
GTTCCAACAGAAGAACCAGAGACGGCCACAATCAAAGATCTTCTGAACAG
CCTTATTGAACGTGTTTCAGATCTTCAAAATGGTNCACAATCAAAGATCT
TCTGAACAGCCTTATTGAACGTGTTTCAGATCTTCAAAATGGTGAGCACA
TTAATTTTTCTTGTACAGTCATTAATACCAACATTTTTACCCTTAACTAC
CAGATTTATGGTGATTTTGTTTATTTGGCTAAAGAATCAACTCATTTTTA
TTGTGCATGAGTTTTGATTTAAAGGTTCTCTTCTTCTTCATTTTGATCAG
GTGACGTCATGGCATCACCAAGTACGTCTGAAAAAGCAAACAATATGGGT
ACTACATTGAATGGTAAGAGAATACTTGTTCTATTTTTTTTGCATTTTCT
TTACCAGTTGCCTGAGCCAGCGAAAGATCTTTTATCAGCCTAAAATCAAA
GCATAACAACTTGTGGTTTAAATAAGTGACAAAAGGTTTTTCCCTTTTTC
AGTGGTCGAAAGCCCCATCAAGCGTAAAGAATTCATCAACTCGTGTAAAC
GCTTCAAGATCGAGGACGTCAACCAGCTCGAATACTGGCAATGCGTAAAG
CACTATCTGTTCAACAATCTTGGGTTCAAACGTTTGCATGATCCTGTCGC
ACATTCTTTGTTCCGTACAAATGAAAAGTACGTTGCATCCTTAAAATCAC
CAAGACCACCAACCATAGCAAATCCATTTGAAGATGCAGCCTTTCTGGTT
CTAAGTAAGCCGAGA Coding sequence (CDS) from alignment at scaffold_291:54660..55524- >TCONS_00057522 ID=TCONS_00057522|Name=TCONS_00057522|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_291:54660..55524- (Clytia hemisphaerica)
TGGTCGAAAGCCCCATCAAGCGTAAAGAATTCATCAACTCGTGTAAACGC
TTCAAGATCGAGGACGTCAACCAGCTCGAATACTGGCAATGCGTAAAGCA
CTATCTGTTCAACAATCTTGGGTTCAAACGTTTGCATGATCCTGTCGCAC
ATTCTTTGTTCCGTACAAATGAAAAGTACGTTGCATCCTTAAAATCACCA
AGACCACCAACCATAGCAAATCCATTTGAAGATGCAGCCTTTCTGGTTCT
AAGTAAGCCGAGAGTGACGTCATGGCATCACCAAGTACGTCTGAAAAAGC
AAACAATATGGGTACTACATTGAATGAGTGATGCACTCATTGGTTTCATT
TCCTCATCTACCGAACAAGACTCCGATATAGAACCTCCTCGGAAACGAGC
CCGTCACAGATGGATCGGAAGTCCAGTTCCAACAGAAGAACCAGAGACGG
CCACAATCAAAGATCTTCTGAACAGCCTTATTGAACGTGTTTCAGATCTT
CAAAATGTGGTCGAAAGCCCCATCAAGCGTAAAGAATTCATCAACTCGTG
TAAACGCTTCAAGATCGAGGACGTCAACCAGCTCGAATACTGGCAATGCG
TAAAGCACTATCTGTTCAACAATCTTGGGTTCAAACGTTTGCATGATCCT
GTCGCACATTCTTTGTTCCGTACAAATGAAAAGTACGTTGCATCCTTAAA
ATCACCAAGACCACCAACCATAGCAAATCCATTTGAAGATGCAGCCTTTC
TGGTTCTAAGTAAGCCGAGAGTGACGTCATGGCATCACCAAGTACGTCTG
AAAAAGCAAACAATATGGGTACTACATTGAATGAGTGATGCACTCATTGG
TTTCATTTCCTCATCTACCGAACAAGACTCCGATATAGAACCTCCTCGGA
AACGAGCCCGTCACAGATGGATCGGAAGTCCAGTTCCAACAGAAGAACCA
GAGACGGCCACAATCAAAGATCTTCTGAACAGCCTTATTGAACGTGTTTC
AGATCTTCAAAATGTGGTCGAAAGCCCCATCAAGCGTAAAGAATTCATCA
ACTCGTGTAAACGCTTCAAGATCGAGGACGTCAACCAGCTCGAATACTGG
CAATGCGTAAAGCACTATCTGTTCAACAATCTTGGGTTCAAACGTTTGCA
TGATCCTGTCGCACATTCTTTGTTCCGTACAAATGAAAAGTACGTTGCAT
CCTTAAAATCACCAAGACCACCAACCATAGCAAATCCATTTGAAGATGCA
GCCTTTCTGGTTCTAAGTAAGCCGAGAGTGACGTCATGGCATCACCAAGT
ACGTCTGAAAAAGCAAACAATATGGGTACTACATTGAATGAGTGATGCAC
TCATTGGTTTCATTTCCTCATCTACCGAACAAGACTCCGATATAGAACCT
CCTCGGAAACGAGCCCGTCACAGATGGATCGGAAGTCCAGTTCCAACAGA
AGAACCAGAGACGGCCACAATCAAAGATCTTCTGAACAGCCTTATTGAAC
GTGTTTCAGATCTTCAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057522-exon-scaffold_291-1575043694:55343..55524 | TCONS_00057522-exon-scaffold_291-1575043694:55343..55524 | Clytia hemisphaerica | exon |
| TCONS_00057522-exon-scaffold_291-1575043694:55062..55124 | TCONS_00057522-exon-scaffold_291-1575043694:55062..55124 | Clytia hemisphaerica | exon |
| TCONS_00057522-exon-scaffold_291-1575043694:54660..54922 | TCONS_00057522-exon-scaffold_291-1575043694:54660..54922 | Clytia hemisphaerica | exon |
| TCONS_00057522-exon-scaffold_291-1510915933:55343..55524 | TCONS_00057522-exon-scaffold_291-1510915933:55343..55524 | Clytia hemisphaerica | exon |
| TCONS_00057522-exon-scaffold_291-1510915933:55062..55124 | TCONS_00057522-exon-scaffold_291-1510915933:55062..55124 | Clytia hemisphaerica | exon |
| TCONS_00057522-exon-scaffold_291-1510915933:54660..54922 | TCONS_00057522-exon-scaffold_291-1510915933:54660..54922 | Clytia hemisphaerica | exon |
| TCONS_00057522-exon-scaffold_291-1491911889:55343..55524 | TCONS_00057522-exon-scaffold_291-1491911889:55343..55524 | Clytia hemisphaerica | exon |
| TCONS_00057522-exon-scaffold_291-1491911889:55062..55124 | TCONS_00057522-exon-scaffold_291-1491911889:55062..55124 | Clytia hemisphaerica | exon |
| TCONS_00057522-exon-scaffold_291-1491911889:54660..54922 | TCONS_00057522-exon-scaffold_291-1491911889:54660..54922 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_291 | supercontig | scaffold_291:54660..55524 - |
Blast
The following BLAST results are available for this feature:
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