TCONS_00057520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057520
Unique NameTCONS_00057520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057520 ID=TCONS_00057520|Name=TCONS_00057520|organism=Clytia hemisphaerica|type=transcript|length=638bp
TCTTTCGATCGTTTCGTTCGTCTTGattgaTTGATTGTTTCCATTGTTTG
TTTCATCGTTTCCAATGACGTCGTCGGTTCCAAATTATTTCCACgtTCCC
AGCACGACAGCACGCATGAGAAGTTACAACACCCGTCGTTTTTGACGCCG
TTTCTACGATTACGTTATTTATTCATTCCCCGTCTCTACAGTTCTGTTTG
CGTTCAAACATTACTACCTtcattttggcttgtttttagaTGTATTTTTA
CCACTTGAGACTAACTTGACTATTATTACGTCAACCGTCACTAGTTTTGG
TGGCGTGCCTATCTTACACCCTTACGTTTCCGCCTTATGGATTACCTTGG
TTGAATATGAAAAATAGTACAGTGCTAAAACTGATGTCGCTATTGATTTC
GATTGGTCATTTCCCTTGCAAATATCCGACTCATACTCATCCGACTTATT
TTTGCTAACTCGGTGAAATTTATTGTTCAGTAGTCAGGGAAAAAATTTTA
GATACTATTTTTAGTGGAAAACCCTGTCAACAGTGACCTCGGTGAAAGCA
TTAATTTTTCTATCCTTTGCTCTCAGGAATTTTTTGTATGGTTTAGGTTT
GACACCTCCACGGGTGAAACAATTAAGTTTAAATNAcc
Run BLAST on NCBI

transcript from alignment at scaffold_291:12479..14084-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057520 ID=TCONS_00057520|Name=TCONS_00057520|organism=Clytia hemisphaerica|type=transcript|length=1606bp|location=Sequence derived from alignment at scaffold_291:12479..14084- (Clytia hemisphaerica)
TCTTTCGATCGTTTCGTTCGTCTTGGTAAGAGAAAAATATCCACTTTTTC
ATGAATTTCTCAGGGTTGAAATATTTTTTCGGAGTTTAAAATTATTCTTT
TTTTATTGCGAGAAGTGTTGAAACTTTTTTTTTTTTTTTTTTTTCAATAG
AAATGAAAAGTTATTTAGAAAGTCTTTAAAATTTTTCAGTCGGATAAATT
TTATTTTTTCGGAGTTCGAATGAATGAAACGGATGAATTGATTCGATATT
TTTATTGAGATTTTTCATCGCATTGAAGCAGACATATTTTGGAGACGGTT
GAAATTTGCAAATAGATGGTTGTTTGTGAAAGGTTTTCTCAGGTTGTTAT
GAATTTATTTTTTGGTGGAGAAAGAAATTGTCCTTTTTATCTCTTAAGAT
ATTGTTCAAGTGTTTTGAATGTTTTTCATTCGATTATTTATTTTTCAGAT
TGATTGATTGTTTCCATTGTTTGTTTCATCGTTTCCAATGACGTCGTCGG
TTCCAAATTATTTCCACGTAAGTATATTTAATCATGTACTTGGTTTCCAG
CTGATATGAAATCGTCTAAAGCCTAAATTTTTTGAACAAATGAATCAATT
CAAAAAACATAGAAAGGAGGGCTTGGTTAGCCTGTACCAAACTCTTCCTT
GTGAACTGAAAAGACCAAGGGAAATTCAGTATGATGTACGGTTCGGACTT
TTATGTGACTGAGACGAATCCACGCAAGTCTCGGTTGTAAAGAGTTAAAC
TATTTTCAGAATTAAGCTTCTTTAATTTTAATTAGTCGAATAAATGCAAT
ATTTCTTTCTGTAGTAAAAATAGCGTATAAAGCCAAAAATACCTCAATTT
GACCTTAAAGTAAGAAAAGGGGTTCTACCTCAAAGAAGTTTAGTAGTTCT
TATAAAAGACTCCGTATTCTGTGTTTTTCAAACTTTTCCACTACATCAGA
TTTTCAGCATTCTCATTAGCCGCCTTTTACTAGTTTTATAAAAACTGTTT
ATTCATCTTCGAGTCAGCAAGTTTTTTTTTGCTATTAACCTCCAAAATTT
TTTTATTCTTAGGTTCCCAGCACGACAGCACGCATGAGAAGTTACAACAC
CCGTCGTTTTTGACGCCGTTTCTACGATTACGTTATTTATTCATTCCCCG
TCTCTACAGTTCTGTTTGCGTTCAAACATTACTACCTTCATTTTGGCTTG
TTTTTAGATGTATTTTTACCACTTGAGACTAACTTGACTATTATTACGTC
AACCGTCACTAGTTTTGGTGGCGTGCCTATCTTACACCCTTACGTTTCCG
CCTTATGGATTACCTTGGTTGAATATGAAAAATAGTACAGTGCTAAAACT
GATGTCGCTATTGATTTCGATTGGTCATTTCCCTTGCAAATATCCGACTC
ATACTCATCCGACTTATTTTTGCTAACTCGGTGAAATTTATTGTTCAGTA
GTCAGGGAAAAAATTTTAGATACTATTTTTAGTGGAAAACCCTGTCAACA
GTGACCTCGGTGAAAGCATTAATTTTTCTATCCTTTGCTCTCAGGAATTT
TTTGTATGGTTTAGGTTTGACACCTCCACGGGTGAAACAATTAAGTTTAA
ATNACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036258XLOC_036258Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057520-exon-scaffold_291-1575043694:14060..14084TCONS_00057520-exon-scaffold_291-1575043694:14060..14084Clytia hemisphaericaexon
TCONS_00057520-exon-scaffold_291-1575043694:13568..13636TCONS_00057520-exon-scaffold_291-1575043694:13568..13636Clytia hemisphaericaexon
TCONS_00057520-exon-scaffold_291-1575043694:12479..13022TCONS_00057520-exon-scaffold_291-1575043694:12479..13022Clytia hemisphaericaexon
TCONS_00057520-exon-scaffold_291-1510915933:14060..14084TCONS_00057520-exon-scaffold_291-1510915933:14060..14084Clytia hemisphaericaexon
TCONS_00057520-exon-scaffold_291-1510915933:13568..13636TCONS_00057520-exon-scaffold_291-1510915933:13568..13636Clytia hemisphaericaexon
TCONS_00057520-exon-scaffold_291-1510915933:12479..13022TCONS_00057520-exon-scaffold_291-1510915933:12479..13022Clytia hemisphaericaexon
TCONS_00057520-exon-scaffold_291-1491911889:14060..14084TCONS_00057520-exon-scaffold_291-1491911889:14060..14084Clytia hemisphaericaexon
TCONS_00057520-exon-scaffold_291-1491911889:13568..13636TCONS_00057520-exon-scaffold_291-1491911889:13568..13636Clytia hemisphaericaexon
TCONS_00057520-exon-scaffold_291-1491911889:12479..13022TCONS_00057520-exon-scaffold_291-1491911889:12479..13022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:12479..14084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.255044	0.758244	0.280141	0.11621	0.360069	0.150517	0.760912	0.904983	1.19457	0.9188	1.12624	1.07044	2.83028	3.01036	1.58321	0.298664	0.595391	0.966709	2.162	2.39089	2.85134	1.80936	2.41395	1.34544	1.32027	1.34458	4.3635	2.36723	3.16022	2.5153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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