TCONS_00057510 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057510
Unique Name	TCONS_00057510
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	821

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_291:67107..70250+
coding sequence from alignment at scaffold_291:67107..70250+

transcript sequence

>TCONS_00057510 ID=TCONS_00057510|Name=TCONS_00057510|organism=Clytia hemisphaerica|type=transcript|length=821bp
ATATACGGATCGGTCTTAGACGCAGAGATTATTTACAATGAACGTGGAAG
CAAAGGTTTTGGTTTTGTTACCATGGAAACAAGCGAGGATGCTTCAAAAG
CGAAAGAAGCTCTACACGGAAAAGAAATTGACGGGCGAAAAATTGAGGTC
AACAAAGCAACTCCTAGGACTAACACTTCGAAAGTAACCCCCCGATTGCG
AAACAAGTCGCCGATCGCTGCAACCACAGCCACCCCTGGTCTTCTCCAAC
CCACCGGTGCTGGTCATCTAAACGGTGTCATTCGTCCGATTACCATGGCA
ACTCAGGCAGCTGCCTACCCTGCAGCCTGGAATCCAGCtTCGTTGACCGC
CCTTTCTACACCCTCCATACCGACTACCTTTCAACTACCGCCCTCTCCTC
ACCAACTTCTTTCATCCGCTATTTCAACCGGAACAATGCCGGGTACTGCA
AATCCAATGTTTTCGAGCTTCCCATCACCGTTTTACCCCACTCCCGAACA
ATACGCACAATATTACAACTATATCACAGGAGGTTCAAGTGTACCCGTCA
CACCCAACACAAATCAAACTGGTCCGATCCGAGCTGCCCCTAATACTAAT
ATGTTCCATCGATTTCAACCATATTGAGTATGAGCTTGATTGACTACTTG
GTGTTGTCACAGTGCGTATGGCTAAGAAACCCAGTGATGGCATCCCGATG
TGTCAAATCGATTCATCACATTCGGTGTTTAGATCAATCTGCTTTTAGTT
TCAATGATGTAATATCGTAtttcaaaaatgccaaatctAGTTATTAGCTT
CTAGTGATTATAATTTGACCT

Run BLAST on NCBI

protein sequence of TCONS_00057510-protein

>TCONS_00057510-protein ID=TCONS_00057510-protein|Name=TCONS_00057510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
IYGSVLDAEIIYNERGSKGFGFVTMETSEDASKAKEALHGKEIDGRKIEV
NKATPRTNTSKVTPRLRNKSPIAATTATPGLLQPTGAGHLNGVIRPITMA
TQAAAYPAAWNPASLTALSTPSIPTTFQLPPSPHQLLSSAISTGTMPGTA
NPMFSSFPSPFYPTPEQYAQYYNYITGGSSVPVTPNTNQTGPIRAAPNTN
MFHRFQPY

Run BLAST on NCBI

transcript from alignment at scaffold_291:67107..70250+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057510 ID=TCONS_00057510|Name=TCONS_00057510|organism=Clytia hemisphaerica|type=transcript|length=3144bp|location=Sequence derived from alignment at scaffold_291:67107..70250+ (Clytia hemisphaerica)
ATATACGGATCGGTCTTAGACGCAGAGATTATTTACAATGAACGTGGAAG
CAAAGGTTTTGGTTTTGTTACCATGGAAACAAGCGAGGATGCTTCAAAAG
CGAAAGAAGCTCTACACGGAAAAGAAATTGACGGGCGAAAAATTGAGGTG
AGAAAATGTTGTATTTTGTCCATTCTTTTAATGGAAATTTTTTCCTGGAC
AGTTTTACGTCATCttctttttaaacatttttgacATAACTGGCGTTTGA
AAAGTGCCCTCAACTTTGCGCCTACTCTTACacttagaataggcagggcg
aaaagtgagccgtctaaactagagctaagatGAGGGAGTGACCTTAAGCG
CTAGTTTAGATGGCCACCTTTCTACCCTACCTAATATGGTttttagagta
ggcagaaagtgggcacaaagttgatagttaaaatctttgcttggaaaata
taaaaaaaagtcattGCATTGGCGTCAAacgagggcaatgcattgacttt
agacagcccactttatgcccaccttaattcacaattagaaaaggcagggc
gaaaagtggtccgtctaaactagagcttagagATATTGGAAGATTCGAAA
ATTCTGACGAAAGATTCCAGTAACTGTTATTAATCAGTATTTTCTTATCT
TTTACTCAGGTCAACAAAGCAACTCCTAGGACTAACACTTCGAAAGGTAA
TGTTTGCTCATGTAGGTTAAAATGTATCGAAAACGAACCGTCCATTATTT
GTGCATTTAAACAATCTATAATATACTGTCTGTCGGCTTTAAAGAAGAAG
TCTGTAAAATACTTGACCGATGATTGCGACTAAAGACTACATTTCATTTA
AAGTTACAAtacacttttattttatgaGAATATAAAGCTTTGGTTATAGA
ATAAATTTACACCTATTCTTGCCACAAATTCCAGAAACTACTAAGAAAAT
ACTACGGTTTCGATTTCATttctgaaaatgaaacaaaacaaagaacgTCG
AGGCCTTGATTTTATTAGTAAAATAAGTACAATAATCTTGTTCAGAATTT
ACAGGCTGGCACACAAAAAGCCTTTATTTCTCGTATTTCATTACATActg
atttatatttcttttgaaCAGTAACCCCCCGATTGCGAAACAAGTCGCCG
ATCGCTGCAACCACAGCCACCCCTGGTCTTCTCCAACCCACCGGTGCTGG
TCATCTAAACGGTGTCATTCGTCCGATTACCATGGCAACTCAGGCAGCTG
CCTACCCTGCAGCCTGGAATCCAGCGTAAGTagtttttttcttgcttgac
tACAAGTTTAAGTACtgtcatattttttaaatctaaaataatAAGTTTTG
TAAATTAATAGGAATgaagtttttaaatttggctgagttgttttttctga
gaaaaataaatttcaaacagCCAAATGCGAAATTATGGGACAAAAGCAAT
AGCTTGAAACCCCCTTGTCaagaaatatttcacttgaaAACTATTTACac
tttaatcttttttttctgtttttagtTCGTTGACCGCCCTTTCTACACCC
TCCATACCGACTACCTTTCAACTACCGCCCTCTCCTCACCAACTTCTTTC
ATCCGCTATTTCAACCGGAACAATGCCGGGTACTGCAAATCCAATGTTTT
CGAGGTAAGAAATCCATTTTTGGTGTATACTCTCTTTCTGCTAAATCAAT
GTGTCTGCATAACTTTGGGgcaaacacccctgtctcagtgtcCCGGTGGA
ACATTTTCCCACATTTAggataaaagtttttttccgaAATCTCACtgtag
tagagggcattttgtacctaactcgagatattgagcttcaaaaagcgcaa
aattTGGACAAAATAGCTGTTTCTGGCTAAAAAACACGGTTTTCAAGGGT
Taatatctcgagttaggtacagaaatcacctatacttgcaatatatctct
aatcttaattttttgagagctttccaaaaatatacaataggtctccgttt
tctcgagctaaaattttcattaatttttaaccctatgatttttgcctgag
accgtcatatttgtccgaaaatcacaccaaagtgtccgaataaaaattgg
aaacatcgtaatttcgattcccctaccccttagctttccaaaaatatata
acaagtgcttctaacaaaacaatcgagcgattccaaaaaatcgaacaaaa
ttccctcTACTACTGGGAATAGACAATTTTAAAGTACATTTTATTCCATT
GAACTTCGAATAGGGATGAAATCCCACCAGATCTTTGACACGGTGGTAAA
GGCATGGTATATCTCAAGACAAAACGGTCTTTTTCCATCAGAATGCCTTT
GTTTTAAACGattccttttcaataaaaactcaAGTATCAAATTGATAAGT
CTTCCAAATGGGTGAAAGAAGACGATTTTTCATGGATTTATCAACAAAAA
CATACCTAGACCTTGTGTAGTAAATCCCTATTGTTTGATTGAATTCTTTT
TGATTACTTTTCAGCTTCCCATCACCGTTTTACCCCACTCCCGTAAGTAT
TAATAAACATTTTATTGCATTTTAGAAAATATGAATCTATTTATATTCga
attaaaatttcgaaaaaatatacaTATGATTGGTTTCGTAAGGAGCTTTT
ACTTTATACTACTTGTAGATAGAGTGTCCATTTTATGCTTTTCCCTGATG
CATAAATGGAATGTTAATTTCCCTATGTTTGCAAATTTTCTCGGAAATAC
ATCGTGTATTCCCTAGTACCGatggaaaaaaacaaacttatttCTAACCC
TCCTTTTTCTTTTCACAGGAACAATACGCACAATATTACAACTATATCAC
AGGAGGTTCAAGTGTACCCGTCACACCCAACACAAATCAAACTGGTCCGA
TCCGAGCTGCCCCTAATACTAATATGTTCCATCGATTTCAACCATATTGA
GTATGAGCTTGATTGACTACTTGGTGTTGTCACAGTGCGTATGGCTAAGA
AACCCAGTGATGGCATCCCGATGTGTCAAATCGATTCATCACATTCGGTG
TTTAGATCAATCTGCTTTTAGTTTCAATGATGTAATATCGTAtttcaaaa
atgccaaatctAGTTATTAGCTTCTAGTGATTATAATTTGACCT

Coding sequence (CDS) from alignment at scaffold_291:67107..70250+

>TCONS_00057510 ID=TCONS_00057510|Name=TCONS_00057510|organism=Clytia hemisphaerica|type=CDS|length=3762bp|location=Sequence derived from alignment at scaffold_291:67107..70250+ (Clytia hemisphaerica)
ATATACGGATCGGTCTTAGACGCAGAGATTATTTACAATGAACGTGGAAG
CAAAGGTTTTGGTTTTGTTACCATGGAAACAAGCGAGGATGCTTCAAAAG
CGAAAGAAGCTCTACACGGAAAAGAAATTGACGGGCGAAAAATTGAGGTC
AACAAAGCAACTCCTAGGACTAACACTTCGAAAGTAACCCCCCGATTGCG
AAACAAGTCGCCGATCGCTGCAACCACAGCCACCCCTGGTCTTCTCCAAC
CCACCGGTGCTGGTCATCTAAACGGTGTCATTCGTCCGATTACCATGGCA
ACTCAGGCAGCTGCCTACCCTGCAGCCTGGAATCCAGCtTCGTTGACCGC
CCTTTCTACACCCTCCATACCGACTACCTTTCAACTACCGCCCTCTCCTC
ACCAACTTCTTTCATCCGCTATTTCAACCGGAACAATGCCGGGTACTGCA
AATCCAATGTTTTCGAGCTTCCCATCACCGTTTTACCCCACTCCCGAACA
ATACGCACAATATTACAACTATATCACAGGAGGTTCAAGTGTACCCGTCA
CACCCAACACAAATCAAACTGGTCCGATCCGAGCTGCCCCTAATACTAAT
ATGTTCCATCGATTTCAACCATATTGAATATACGGATCGGTCTTAGACGC
AGAGATTATTTACAATGAACGTGGAAGCAAAGGTTTTGGTTTTGTTACCA
TGGAAACAAGCGAGGATGCTTCAAAAGCGAAAGAAGCTCTACACGGAAAA
GAAATTGACGGGCGAAAAATTGAGGTCAACAAAGCAACTCCTAGGACTAA
CACTTCGAAAGTAACCCCCCGATTGCGAAACAAGTCGCCGATCGCTGCAA
CCACAGCCACCCCTGGTCTTCTCCAACCCACCGGTGCTGGTCATCTAAAC
GGTGTCATTCGTCCGATTACCATGGCAACTCAGGCAGCTGCCTACCCTGC
AGCCTGGAATCCAGCtTCGTTGACCGCCCTTTCTACACCCTCCATACCGA
CTACCTTTCAACTACCGCCCTCTCCTCACCAACTTCTTTCATCCGCTATT
TCAACCGGAACAATGCCGGGTACTGCAAATCCAATGTTTTCGAGCTTCCC
ATCACCGTTTTACCCCACTCCCGAACAATACGCACAATATTACAACTATA
TCACAGGAGGTTCAAGTGTACCCGTCACACCCAACACAAATCAAACTGGT
CCGATCCGAGCTGCCCCTAATACTAATATGTTCCATCGATTTCAACCATA
TTGAATATACGGATCGGTCTTAGACGCAGAGATTATTTACAATGAACGTG
GAAGCAAAGGTTTTGGTTTTGTTACCATGGAAACAAGCGAGGATGCTTCA
AAAGCGAAAGAAGCTCTACACGGAAAAGAAATTGACGGGCGAAAAATTGA
GGTCAACAAAGCAACTCCTAGGACTAACACTTCGAAAGTAACCCCCCGAT
TGCGAAACAAGTCGCCGATCGCTGCAACCACAGCCACCCCTGGTCTTCTC
CAACCCACCGGTGCTGGTCATCTAAACGGTGTCATTCGTCCGATTACCAT
GGCAACTCAGGCAGCTGCCTACCCTGCAGCCTGGAATCCAGCtTCGTTGA
CCGCCCTTTCTACACCCTCCATACCGACTACCTTTCAACTACCGCCCTCT
CCTCACCAACTTCTTTCATCCGCTATTTCAACCGGAACAATGCCGGGTAC
TGCAAATCCAATGTTTTCGAGCTTCCCATCACCGTTTTACCCCACTCCCG
AACAATACGCACAATATTACAACTATATCACAGGAGGTTCAAGTGTACCC
GTCACACCCAACACAAATCAAACTGGTCCGATCCGAGCTGCCCCTAATAC
TAATATGTTCCATCGATTTCAACCATATTGAATATACGGATCGGTCTTAG
ACGCAGAGATTATTTACAATGAACGTGGAAGCAAAGGTTTTGGTTTTGTT
ACCATGGAAACAAGCGAGGATGCTTCAAAAGCGAAAGAAGCTCTACACGG
AAAAGAAATTGACGGGCGAAAAATTGAGGTCAACAAAGCAACTCCTAGGA
CTAACACTTCGAAAGTAACCCCCCGATTGCGAAACAAGTCGCCGATCGCT
GCAACCACAGCCACCCCTGGTCTTCTCCAACCCACCGGTGCTGGTCATCT
AAACGGTGTCATTCGTCCGATTACCATGGCAACTCAGGCAGCTGCCTACC
CTGCAGCCTGGAATCCAGCtTCGTTGACCGCCCTTTCTACACCCTCCATA
CCGACTACCTTTCAACTACCGCCCTCTCCTCACCAACTTCTTTCATCCGC
TATTTCAACCGGAACAATGCCGGGTACTGCAAATCCAATGTTTTCGAGCT
TCCCATCACCGTTTTACCCCACTCCCGAACAATACGCACAATATTACAAC
TATATCACAGGAGGTTCAAGTGTACCCGTCACACCCAACACAAATCAAAC
TGGTCCGATCCGAGCTGCCCCTAATACTAATATGTTCCATCGATTTCAAC
CATATTGAATATACGGATCGGTCTTAGACGCAGAGATTATTTACAATGAA
CGTGGAAGCAAAGGTTTTGGTTTTGTTACCATGGAAACAAGCGAGGATGC
TTCAAAAGCGAAAGAAGCTCTACACGGAAAAGAAATTGACGGGCGAAAAA
TTGAGGTCAACAAAGCAACTCCTAGGACTAACACTTCGAAAGTAACCCCC
CGATTGCGAAACAAGTCGCCGATCGCTGCAACCACAGCCACCCCTGGTCT
TCTCCAACCCACCGGTGCTGGTCATCTAAACGGTGTCATTCGTCCGATTA
CCATGGCAACTCAGGCAGCTGCCTACCCTGCAGCCTGGAATCCAGCtTCG
TTGACCGCCCTTTCTACACCCTCCATACCGACTACCTTTCAACTACCGCC
CTCTCCTCACCAACTTCTTTCATCCGCTATTTCAACCGGAACAATGCCGG
GTACTGCAAATCCAATGTTTTCGAGCTTCCCATCACCGTTTTACCCCACT
CCCGAACAATACGCACAATATTACAACTATATCACAGGAGGTTCAAGTGT
ACCCGTCACACCCAACACAAATCAAACTGGTCCGATCCGAGCTGCCCCTA
ATACTAATATGTTCCATCGATTTCAACCATATTGAATATACGGATCGGTC
TTAGACGCAGAGATTATTTACAATGAACGTGGAAGCAAAGGTTTTGGTTT
TGTTACCATGGAAACAAGCGAGGATGCTTCAAAAGCGAAAGAAGCTCTAC
ACGGAAAAGAAATTGACGGGCGAAAAATTGAGGTCAACAAAGCAACTCCT
AGGACTAACACTTCGAAAGTAACCCCCCGATTGCGAAACAAGTCGCCGAT
CGCTGCAACCACAGCCACCCCTGGTCTTCTCCAACCCACCGGTGCTGGTC
ATCTAAACGGTGTCATTCGTCCGATTACCATGGCAACTCAGGCAGCTGCC
TACCCTGCAGCCTGGAATCCAGCtTCGTTGACCGCCCTTTCTACACCCTC
CATACCGACTACCTTTCAACTACCGCCCTCTCCTCACCAACTTCTTTCAT
CCGCTATTTCAACCGGAACAATGCCGGGTACTGCAAATCCAATGTTTTCG
AGCTTCCCATCACCGTTTTACCCCACTCCCGAACAATACGCACAATATTA
CAACTATATCACAGGAGGTTCAAGTGTACCCGTCACACCCAACACAAATC
AAACTGGTCCGATCCGAGCTGCCCCTAATACTAATATGTTCCATCGATTT
CAACCATATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036251	XLOC_036251	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00057510-protein	TCONS_00057510-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_291	supercontig	scaffold_291:67107..70250 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.00635	6.64203	12.5861	16.2034	5.56362	5.03718	7.95869	7.33731	4.21731	5.99256	5.33803	3.43774	8.32164	8.97583	2.74099	3.32662	6.823	5.27299	13.379	9.88112	8.98309	8.74278	8.10843	7.65056	8.40976	8.06906	3.29176	2.73926	3.83899	4.92445

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Blast

[Close]

BLAST of TCONS_00057510 vs. Swiss-Prot (Human)
Match: RFOX2 (RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.943e-20
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 1

Query:    4 YGSVLDAEIIYNERGSKGFGFVTMETSEDASKAKEALHGKEIDGRKIEVNKATPR--TNTSKVTPRLRNK--SPIAATTATPGLL 246
            +G +LD EII+NERGSKGFGFVT E S DA +A+E LHG  ++GRKIEVN AT R  TN   VTP       SP+      P L 
Sbjct:  144 FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELY 228

The following BLAST results are available for this feature:

BLAST of TCONS_00057510 vs. Swiss-Prot (Human)

BLAST of TCONS_00057510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RFOX2	1.943e-20	54.12	RNA binding protein fox-1 homolog 2 OS=Homo sapien...	[more]

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TCONS_00057510 (transcript) - C. hemisphaerica