TCONS_00057507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057507
Unique NameTCONS_00057507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057507 ID=TCONS_00057507|Name=TCONS_00057507|organism=Clytia hemisphaerica|type=transcript|length=576bp
GCTGATTCCACGATAGTTATTCTTGTTGGATTTCATGATGGGAACGATAA
TTGATGTCGAGAGTGATTGTGGGATTTCATTTGAGTTTAGAATATTGTTT
ATCAGAGGTGTAAGGTAGGATAACAGATTTGGACTGATGCTGTGGATGAA
ATGCTCTGCTTTGATGTTGAAGAGGTCAGATGTTTTATTTCTGTTGAGCT
CTCTGATTGCTTTTTTTATGTCAGTGTAAGTGACATACAAGTCTGggttt
ttgttttgttcaaGTTCTATTAGTAAGTCAATAAGATTCATGTTGGATGC
GGTGTTGTTGATATTTTCTGTTCGGGGGGTGTTTAGAAGGTTGTTGAAGT
GAGAGTTAAACTCTTGATTAATATCACTGATGTCAGATTTATTGTTAATA
TTGTATAGTTTATTTTCGTTTGATTTTTGGAGTTGAATTTGCTTCCAGTA
TGAATGTGGTctaaatgttttaattttttcaatgttaaTAAAGTGGTTTG
CAGTTGCTTGgtttttgtatctttttgaTAGCGAGCGGAAATCCTTTCTT
GCATACAGATAGCGGTTGAATGAAAT
Run BLAST on NCBI

protein sequence of TCONS_00057507-protein

>TCONS_00057507-protein ID=TCONS_00057507-protein|Name=TCONS_00057507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
ISFNRYLYARKDFRSLSKRYKNQATANHFINIEKIKTFRPHSYWKQIQLQ
KSNENKLYNINNKSDISDINQEFNSHFNNLLNTPRTENINNTASNMNLID
LLIELEQNKNPDLYVTYTDIKKAIRELNRNKTSDLFNIKAEHFIHSISPN
LLSYLTPLINNILNSNEIPQSLSTSIIVPIMKSNKNNYRGIS
Run BLAST on NCBI

transcript from alignment at scaffold_29:138..713

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057507 ID=TCONS_00057507|Name=TCONS_00057507|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at scaffold_29:138..713 (Clytia hemisphaerica)
ATTTCATTCAACCGCTATCTGTATGCAAGAAAGGATTTCCGCTCGCTAtc
aaaaagatacaaaaacCAAGCAACTGCAAACCACTTTAttaacattgaaa
aaattaaaacatttagACCACATTCATACTGGAAGCAAATTCAACTCCAA
AAATCAAACGAAAATAAACTATACAATATTAACAATAAATCTGACATCAG
TGATATTAATCAAGAGTTTAACTCTCACTTCAACAACCTTCTAAACACCC
CCCGAACAGAAAATATCAACAACACCGCATCCAACATGAATCTTATTGAC
TTACTAATAGAACttgaacaaaacaaaaaccCAGACTTGTATGTCACTTA
CACTGACATAAAAAAAGCAATCAGAGAGCTCAACAGAAATAAAACATCTG
ACCTCTTCAACATCAAAGCAGAGCATTTCATCCACAGCATCAGTCCAAAT
CTGTTATCCTACCTTACACCTCTGATAAACAATATTCTAAACTCAAATGA
AATCCCACAATCACTCTCGACATCAATTATCGTTCCCATCATGAAATCCA
ACAAGAATAACTATCGTGGAATCAGC

Coding sequence (CDS) from alignment at scaffold_29:138..713

>TCONS_00057507 ID=TCONS_00057507|Name=TCONS_00057507|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_29:138..713 (Clytia hemisphaerica)
ATTTCATTCAACCGCTATCTGTATGCAAGAAAGGATTTCCGCTCGCTAtc
aaaaagatacaaaaacCAAGCAACTGCAAACCACTTTAttaacattgaaa
aaattaaaacatttagACCACATTCATACTGGAAGCAAATTCAACTCCAA
AAATCAAACGAAAATAAACTATACAATATTAACAATAAATCTGACATCAG
TGATATTAATCAAGAGTTTAACTCTCACTTCAACAACCTTCTAAACACCC
CCCGAACAGAAAATATCAACAACACCGCATCCAACATGAATCTTATTGAC
TTACTAATAGAACttgaacaaaacaaaaaccCAGACTTGTATGTCACTTA
CACTGACATAAAAAAAGCAATCAGAGAGCTCAACAGAAATAAAACATCTG
ACCTCTTCAACATCAAAGCAGAGCATTTCATCCACAGCATCAGTCCAAAT
CTGTTATCCTACCTTACACCTCTGATAAACAATATTCTAAACTCAAATGA
AATCCCACAATCACTCTCGACATCAATTATCGTTCCCATCATGAAATCCA
ACAAGAATAACTATCGTGGAATCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036248XLOC_036248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057507-exon-scaffold_29-1491911889:138..713TCONS_00057507-exon-scaffold_29-1491911889:138..713Clytia hemisphaericaexon
TCONS_00057507-exon-scaffold_29-1510915933:138..713TCONS_00057507-exon-scaffold_29-1510915933:138..713Clytia hemisphaericaexon
TCONS_00057507-exon-scaffold_29-1575043694:138..713TCONS_00057507-exon-scaffold_29-1575043694:138..713Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057507-proteinTCONS_00057507-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:138..713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.386678	0	0	0.107084	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top