TCONS_00057503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057503
Unique NameTCONS_00057503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057503 ID=TCONS_00057503|Name=TCONS_00057503|organism=Clytia hemisphaerica|type=transcript|length=841bp
ATGGAAATGGTGTCTCAACGAAGTCAGTCAAATCAATTGTAAGAAGTTTT
CCAGGTGCTGATTCAACTGATATGATCGACTACTTGAAACCGTTGTTAAA
TAAAAAGAAGCCAAAGTATCTCATATTACATGTAGGTACAAACGATATCA
CATCTGGGTGCGACAcagttaaaaaccttgaaaaaatccGAGAAATGATC
AATCAAATCACTCCTGAAACAGAGCTAATCATATCAAATGTGATTACTCG
CGATGATAAACAAGGAATTCAATCTGAAGTAAATGGTATTAATAGTGTTC
TTCTTAGTGTTGTCCAAAAAGAAATTGCACCTAAATGGCACTGGAATTTC
ACgttttgctcaaaatttgaaagaatttatATTGGATAGTTATTGTTGAG
ATGAAATTGATGACCAGAATGATGATGTTCTTGAACCTGACTTGGACGAG
CTTAGTAATGGTTATTTGAATGGTTGGAAAtctttgcaaaatttgaaatt
taaaaactcATCTAATTTTATTATCTCCTATCTTAATATTAACTCAATTC
GAAATAAGTTCTCTGATCTTCAGGTTCTTgtggaaaaaacttttgatgta
aTTACCATAGCAGAATCAAAACTCGATGAGTCTTTTCCTAGTTCTGACTA
CTAATCTACAGGGCTACCAATTTCCTCCTTTTCGTATAGACTGTACATCA
AACAGTGGAGGCCTCTTAACATTTGTGAAAAGTGGCATTCCTACACGTCA
CTTGACCAATTTTAAGCTAGACCCTGCTCTACACATTCTTCCTTTAGAAA
TAAGACTTAGGAAAGACAAATTATTGGTATTTAATATTTAT
Run BLAST on NCBI

protein sequence of TCONS_00057503-protein

>TCONS_00057503-protein ID=TCONS_00057503-protein|Name=TCONS_00057503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
GNGVSTKSVKSIVRSFPGADSTDMIDYLKPLLNKKKPKYLILHVGTNDIT
SGCDTVKNLEKIREMINQITPETELIISNVITRDDKQGIQSEVNGINSVL
LSVVQKEIAPKWHWNFTFCSKFERIYIG
Run BLAST on NCBI

transcript from alignment at scaffold_289:419259..420099

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057503 ID=TCONS_00057503|Name=TCONS_00057503|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at scaffold_289:419259..420099 (Clytia hemisphaerica)
ATAAATATTAAATACCAATAATTTGTCTTTCCTAAGTCTTATTTCTAAAG
GAAGAATGTGTAGAGCAGGGTCTAGCTTAAAATTGGTCAAGTGACGTGTA
GGAATGCCACTTTTCACAAATGTTAAGAGGCCTCCACTGTTTGATGTACA
GTCTATACGAAAAGGAGGAAATTGGTAGCCCTGTAGATTAGTAGTCAGAA
CTAGGAAAAGACTCATCGAGTTTTGATTCTGCTATGGTAAttacatcaaa
agttttttccacAAGAACCTGAAGATCAGAGAACTTATTTCGAATTGAGT
TAATATTAAGATAGGAGATAATAAAATTAGATgagtttttaaatttcaaa
ttttgcaaagaTTTCCAACCATTCAAATAACCATTACTAAGCTCGTCCAA
GTCAGGTTCAAGAACATCATCATTCTGGTCATCAATTTCATCTCAACAAT
AACTATCCAATataaattctttcaaattttgagcaaaacGTGAAATTCCA
GTGCCATTTAGGTGCAATTTCTTTTTGGACAACACTAAGAAGAACACTAT
TAATACCATTTACTTCAGATTGAATTCCTTGTTTATCATCGCGAGTAATC
ACATTTGATATGATTAGCTCTGTTTCAGGAGTGATTTGATTGATCATTTC
TCggattttttcaaggtttttaactgTGTCGCACCCAGATGTGATATCGT
TTGTACCTACATGTAATATGAGATACTTTGGCTTCTTTTTATTTAACAAC
GGTTTCAAGTAGTCGATCATATCAGTTGAATCAGCACCTGGAAAACTTCT
TACAATTGATTTGACTGACTTCGTTGAGACACCATTTCCAT

Coding sequence (CDS) from alignment at scaffold_289:419259..420099

>TCONS_00057503 ID=TCONS_00057503|Name=TCONS_00057503|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_289:419259..420099 (Clytia hemisphaerica)
CTATCCAATataaattctttcaaattttgagcaaaacGTGAAATTCCAGT
GCCATTTAGGTGCAATTTCTTTTTGGACAACACTAAGAAGAACACTATTA
ATACCATTTACTTCAGATTGAATTCCTTGTTTATCATCGCGAGTAATCAC
ATTTGATATGATTAGCTCTGTTTCAGGAGTGATTTGATTGATCATTTCTC
ggattttttcaaggtttttaactgTGTCGCACCCAGATGTGATATCGTTT
GTACCTACATGTAATATGAGATACTTTGGCTTCTTTTTATTTAACAACGG
TTTCAAGTAGTCGATCATATCAGTTGAATCAGCACCTGGAAAACTTCTTA
CAATTGATTTGACTGACTTCGTTGAGACACCATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036244XLOC_036244Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057503-proteinTCONS_00057503-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057503-exon-scaffold_289-1491911889:419259..420099TCONS_00057503-exon-scaffold_289-1491911889:419259..420099Clytia hemisphaericaexon
TCONS_00057503-exon-scaffold_289-1510915933:419259..420099TCONS_00057503-exon-scaffold_289-1510915933:419259..420099Clytia hemisphaericaexon
TCONS_00057503-exon-scaffold_289-1575043694:419259..420099TCONS_00057503-exon-scaffold_289-1575043694:419259..420099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:419259..420099 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.449085	0.580574	0.45082	0.349332	21.5236	13.7144	4.39544	4.00047	2.75324	3.63469	1.58611	2.11203	0.343639	0.238543	0.458557	0.690348	0.609049	0.289303	1.17116	0.781316	0.60835	0.595952	0.283679	0.3403	0.27675	0.0600006	0.566991	0.453027	0.0964232	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top