TCONS_00057501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057501
Unique NameTCONS_00057501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057501 ID=TCONS_00057501|Name=TCONS_00057501|organism=Clytia hemisphaerica|type=transcript|length=497bp
aaaatcatCCTAGCATCAGGGAAATCATTACACACAGAAATTCTGATGCT
AAGTTTGAGTTTTCCCAAATTGGAGAGCAAGACATTCTCAAAGCTATTTT
GAGCCTTAAACCAAAAAAATCTGTAAGTGGAAATATACTGACTCGAGTGC
TTAGAATTGCTGCCAGGTCGTGTGTTCCATTTCTAACATTTTGCTTCAAT
GACTGTCTTTTGTCAGGAACATTTCCTGATAGGCTTAAACTCGCTGACAT
CAttccaagttttaaaaaagGCTCCTTGACTGATAAGTCCCATCAGTTTA
CTTCCTGTCGTCTCCAAGATTTTTGAACGTATCTTAGCAGATCAGCTTAA
CGAGCATTTGGAatcttcgttttcaaaactcCTTTGTGGATTGCGGAAGG
GGCATAGCACGCAGCATGCCGTATTAAATCTATTaagaaattggcaaaat
gcTCTTGCTGATAACAAAAAAGTGGGTGCTGTTCTAATTGACTTATC
Run BLAST on NCBI

transcript from alignment at scaffold_289:406997..407493

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057501 ID=TCONS_00057501|Name=TCONS_00057501|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at scaffold_289:406997..407493 (Clytia hemisphaerica)
GATAAGTCAATTAGAACAGCACCCACTTTTTTGTTATCAGCAAGAgcatt
ttgccaatttcttAATAGATTTAATACGGCATGCTGCGTGCTATGCCCCT
TCCGCAATCCACAAAGgagttttgaaaacgaagatTCCAAATGCTCGTTA
AGCTGATCTGCTAAGATACGTTCAAAAATCTTGGAGACGACAGGAAGTAA
ACTGATGGGACTTATCAGTCAAGGAGCcttttttaaaacttggaaTGATG
TCAGCGAGTTTAAGCCTATCAGGAAATGTTCCTGACAAAAGACAGTCATT
GAAGCAAAATGTTAGAAATGGAACACACGACCTGGCAGCAATTCTAAGCA
CTCGAGTCAGTATATTTCCACTTACAGATTTTTTTGGTTTAAGGCTCAAA
ATAGCTTTGAGAATGTCTTGCTCTCCAATTTGGGAAAACTCAAACTTAGC
ATCAGAATTTCTGTGTGTAATGATTTCCCTGATGCTAGGatgatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036242XLOC_036242Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057501-exon-scaffold_289-1491911889:406997..407493TCONS_00057501-exon-scaffold_289-1491911889:406997..407493Clytia hemisphaericaexon
TCONS_00057501-exon-scaffold_289-1510915933:406997..407493TCONS_00057501-exon-scaffold_289-1510915933:406997..407493Clytia hemisphaericaexon
TCONS_00057501-exon-scaffold_289-1575043694:406997..407493TCONS_00057501-exon-scaffold_289-1575043694:406997..407493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:406997..407493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120126	0.0593401	0	9.89062	7.02527	4.58637	7.03269	0.890682	1.09173	0.671965	0.803117	0.0767136	0.850826	0.0795675	0.3758	0.437182	0.896574	0	0.184003	0.208263	0.360966	0	0	0.803897	0.944311	0.89656	0.0939868	0.262794	0.139304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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