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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057497 ID=TCONS_00057497|Name=TCONS_00057497|organism=Clytia hemisphaerica|type=transcript|length=914bp
GTTTTATAGAGGGGGTTTCCGGTCttatttgctttgtttttgtagtATGA
GCGAACCATGATTGCTTTACGTAGGGTTTTAGACATATGAGGTTTTTGAT
TTCCCCGGACGGTTCGCTTTTTCATTGGTGCATGAtcatcaagaatattt
tcaaaagttgtgATAAAAGTTTCAAAGTCTGAGAAGTCACAATCAAGATT
ACGACAGAGGTTGGACCGGAAAcccttttcatcaaaatttttaaaggatC
TATATTCAATTATCTTTGGAGGAGATTTTTTAAAGCTAGCTTTGAACATG
CTATAAATCAGATGATGGTAGTCACTGATTCCAGTTTCAAATGACCACCT
GTTTTTAAAGCAAGGTGCCCGATTTGTAAAGATCAAATCAATGCATCTAC
CCTTTTCTGACTTAAAGCATGTTGGCTTCTTAATTAGACTTTTCAGTGAA
AATGCATCAAGGAACTCTGACATATTCTTCTCAGATATTTCCTcattaaa
atctccaaaaatcaATACATTTTCATACGTGTCACTATAGTGGTCAAGAA
CTTTTGTTAATTCTTCAAGAAACGGTTTTAGCTTTTGTAAACTTGGATTA
CGATAAATAGAAAGTAGGAGCCATttagtttttctcaaattcaacTCCAG
TGTAAGACACTCAATTCCAGGTGATAGAAGATTATCTTTAAGTTGNACTC
CAGTGTAAGACACTCGATTGCAGGTGATAGAAGATTATCTTTAAGCTGGT
GAAGTGGGAGATGGTTTTTTACGTAAAGTAGCAAACCTCCGCtggtttta
gaaaaatcaagtCTAATTGGCTTTTTGAACCCTTTAATCAAAAGCTTGGA
TTCCGGAAACGAAGAGTCTATCTTAGTTTCTGCTATACAGAGGATATCCA
CATGGGGTAGGATG Run BLAST on NCBI protein sequence of TCONS_00057497-protein >TCONS_00057497-protein ID=TCONS_00057497-protein|Name=TCONS_00057497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MSEFLDAFSLKSLIKKPTCFKSEKGRCIDLIFTNRAPCFKNRWSFETGIS
DYHHLIYSMFKASFKKSPPKIIEYRSFKNFDEKGFRSNLCRNLDCDFSDF
ETFITTFENILDDHAPMKKRTVRGNQKPHMSKTLRKAIMVRSYYKNKANK
TGNPLYK Run BLAST on NCBI transcript from alignment at scaffold_289:340991..341904 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057497 ID=TCONS_00057497|Name=TCONS_00057497|organism=Clytia hemisphaerica|type=transcript|length=914bp|location=Sequence derived from alignment at scaffold_289:340991..341904 (Clytia hemisphaerica)
CATCCTACCCCATGTGGATATCCTCTGTATAGCAGAAACTAAGATAGACT
CTTCGTTTCCGGAATCCAAGCTTTTGATTAAAGGGTTCAAAAAGCCAATT
AGacttgatttttctaaaaccaGCGGAGGTTTGCTACTTTACGTAAAAAA
CCATCTCCCACTTCACCAGCTTAAAGATAATCTTCTATCACCTGCAATCG
AGTGTCTTACACTGGAGTNCAACTTAAAGATAATCTTCTATCACCTGGAA
TTGAGTGTCTTACACTGGAgttgaatttgagaaaaactaaATGGCTCCTA
CTTTCTATTTATCGTAATCCAAGTTTACAAAAGCTAAAACCGTTTCTTGA
AGAATTAACAAAAGTTCTTGACCACTATAGTGACACGTATGAAAATGTAT
tgatttttggagattttaatgAGGAAATATCTGAGAAGAATATGTCAGAG
TTCCTTGATGCATTTTCACTGAAAAGTCTAATTAAGAAGCCAACATGCTT
TAAGTCAGAAAAGGGTAGATGCATTGATTTGATCTTTACAAATCGGGCAC
CTTGCTTTAAAAACAGGTGGTCATTTGAAACTGGAATCAGTGACTACCAT
CATCTGATTTATAGCATGTTCAAAGCTAGCTTTAAAAAATCTCCTCCAAA
GATAATTGAATATAGatcctttaaaaattttgatgaaaagggTTTCCGGT
CCAACCTCTGTCGTAATCTTGATTGTGACTTCTCAGACTTTGAAACTTTT
ATcacaacttttgaaaatattcttgatgaTCATGCACCAATGAAAAAGCG
AACCGTCCGGGGAAATCAAAAACCTCATATGTCTAAAACCCTACGTAAAG
CAATCATGGTTCGCTCATactacaaaaacaaagcaaataaGACCGGAAAC
CCCCTCTATAAAAC Coding sequence (CDS) from alignment at scaffold_289:340991..341904 >TCONS_00057497 ID=TCONS_00057497|Name=TCONS_00057497|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_289:340991..341904 (Clytia hemisphaerica)
ATGTCAGAGTTCCTTGATGCATTTTCACTGAAAAGTCTAATTAAGAAGCC
AACATGCTTTAAGTCAGAAAAGGGTAGATGCATTGATTTGATCTTTACAA
ATCGGGCACCTTGCTTTAAAAACAGGTGGTCATTTGAAACTGGAATCAGT
GACTACCATCATCTGATTTATAGCATGTTCAAAGCTAGCTTTAAAAAATC
TCCTCCAAAGATAATTGAATATAGatcctttaaaaattttgatgaaaagg
gTTTCCGGTCCAACCTCTGTCGTAATCTTGATTGTGACTTCTCAGACTTT
GAAACTTTTATcacaacttttgaaaatattcttgatgaTCATGCACCAAT
GAAAAAGCGAACCGTCCGGGGAAATCAAAAACCTCATATGTCTAAAACCC
TACGTAAAGCAATCATGGTTCGCTCATactacaaaaacaaagcaaataaG
ACCGGAAACCCCCTCTATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057497-exon-scaffold_289-1491911889:340991..341904 | TCONS_00057497-exon-scaffold_289-1491911889:340991..341904 | Clytia hemisphaerica | exon |
| TCONS_00057497-exon-scaffold_289-1510915933:340991..341904 | TCONS_00057497-exon-scaffold_289-1510915933:340991..341904 | Clytia hemisphaerica | exon |
| TCONS_00057497-exon-scaffold_289-1575043694:340991..341904 | TCONS_00057497-exon-scaffold_289-1575043694:340991..341904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:340991..341904 . |
Blast
The following BLAST results are available for this feature:
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