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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057496 ID=TCONS_00057496|Name=TCONS_00057496|organism=Clytia hemisphaerica|type=transcript|length=945bp
CTGTACTTCGTTTGGTGATCTAGCCAAACTACACACGCTAAGCAATCACC
TTTTCCACAAGACATGTCTTTATCCTTGTCAATTCTTTTGGCATTGAAAA
TCCTAGTTTCGAGCCTGTCATCACTCGTGCTAGTGTCTTTTTGCTTTACA
TCTCTCAGATGAAGTTTATGACTTTCACACATCTCACACTCATCATCTCC
AAGCTTTGCAAACGATATGTTTTGACTTTTCACAATTCGAGTATACTGAA
CATATGACATGGTATTCTCATTGTTTTCTTTCCTTTGATCAAGATAATCC
TCGTACATTTCTTGAATGGTCAGCTCTGATGGAAGATATAACCGATTTGG
GGCATGCTCTCGCCGATAATGAGAAATTTGAGGATTGAATGACATAACAT
GTTGAATGGCAGTCTGTTTTCCAGAATCTGACATTGCATGCTTTGGCGGA
TGTTTACCCCTTTTATCTTGTAAAGTCACTCCAAAATTTGAGGTTGTACT
CAACGCGGTTGAAATGAATTTGTCGAAACGGTATCCCAAGGTGGAAATGA
ACATATCTTTgcaaacaaatttttgttctcCAGAGGCATCCGGAAACCCA
ATACTTTCGTGCTCTTCTTTTGTTTGAGTCAGCATATCTTCTGGCTGGTT
CCATTGTAACAATGTGATTGTAAATCCATACTTTTTGATGGTTATAGTCA
AGGTCCCAAAAGTGCAATTTAACTCGTTTGTCTTCTGAGAATTTCGAGCA
GTCCAATTTGCAGTTGCAACGAGATTGGATAAGTTTGTGCTTTTCAActt
gtttgttctttttgttaCTTGGTTCATCGTTGTTTTCTAGAAATAACAAG
AAGCCTGTTGgcttgaaggcccagcgaaaagtaacgtgttgaaaacgagc
gtgcaaaacagcaaatgtatgaccctgttgacatggatcaaagtg Run BLAST on NCBI protein sequence of TCONS_00057496-protein >TCONS_00057496-protein ID=TCONS_00057496-protein|Name=TCONS_00057496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MNQVTKRTNKLKSTNLSNLVATANWTARNSQKTNELNCTFGTLTITIKKY
GFTITLLQWNQPEDMLTQTKEEHESIGFPDASGEQKFVCKDMFISTLGYR
FDKFISTALSTTSNFGVTLQDKRGKHPPKHAMSDSGKQTAIQHVMSFNPQ
ISHYRREHAPNRLYLPSELTIQEMYEDYLDQRKENNENTMSYVQYTRIVK
SQNISFAKLGDDECEMCESHKLHLRDVKQKDTSTSDDRLETRIFNAKRID
KDKDMSCGKGDCLACVVWLDHQTKY Run BLAST on NCBI transcript from alignment at scaffold_289:319359..320303 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057496 ID=TCONS_00057496|Name=TCONS_00057496|organism=Clytia hemisphaerica|type=transcript|length=945bp|location=Sequence derived from alignment at scaffold_289:319359..320303 (Clytia hemisphaerica)
cactttgatccatgtcaacagggtcatacatttgctgttttgcacgctcg
ttttcaacacgttacttttcgctgggccttcaagcCAACAGGCTTCTTGT
TATTTCTAGAAAACAACGATGAACCAAGtaacaaaaagaacaaacaagTT
GAAAAGCACAAACTTATCCAATCTCGTTGCAACTGCAAATTGGACTGCTC
GAAATTCTCAGAAGACAAACGAGTTAAATTGCACTTTTGGGACCTTGACT
ATAACCATCAAAAAGTATGGATTTACAATCACATTGTTACAATGGAACCA
GCCAGAAGATATGCTGACTCAAACAAAAGAAGAGCACGAAAGTATTGGGT
TTCCGGATGCCTCTGgagaacaaaaatttgtttgcAAAGATATGTTCATT
TCCACCTTGGGATACCGTTTCGACAAATTCATTTCAACCGCGTTGAGTAC
AACCTCAAATTTTGGAGTGACTTTACAAGATAAAAGGGGTAAACATCCGC
CAAAGCATGCAATGTCAGATTCTGGAAAACAGACTGCCATTCAACATGTT
ATGTCATTCAATCCTCAAATTTCTCATTATCGGCGAGAGCATGCCCCAAA
TCGGTTATATCTTCCATCAGAGCTGACCATTCAAGAAATGTACGAGGATT
ATCTTGATCAAAGGAAAGAAAACAATGAGAATACCATGTCATATGTTCAG
TATACTCGAATTGTGAAAAGTCAAAACATATCGTTTGCAAAGCTTGGAGA
TGATGAGTGTGAGATGTGTGAAAGTCATAAACTTCATCTGAGAGATGTAA
AGCAAAAAGACACTAGCACGAGTGATGACAGGCTCGAAACTAGGATTTTC
AATGCCAAAAGAATTGACAAGGATAAAGACATGTCTTGTGGAAAAGGTGA
TTGCTTAGCGTGTGTAGTTTGGCTAGATCACCAAACGAAGTACAG Coding sequence (CDS) from alignment at scaffold_289:319359..320303 >TCONS_00057496 ID=TCONS_00057496|Name=TCONS_00057496|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_289:319359..320303 (Clytia hemisphaerica)
ATGAACCAAGtaacaaaaagaacaaacaagTTGAAAAGCACAAACTTATC
CAATCTCGTTGCAACTGCAAATTGGACTGCTCGAAATTCTCAGAAGACAA
ACGAGTTAAATTGCACTTTTGGGACCTTGACTATAACCATCAAAAAGTAT
GGATTTACAATCACATTGTTACAATGGAACCAGCCAGAAGATATGCTGAC
TCAAACAAAAGAAGAGCACGAAAGTATTGGGTTTCCGGATGCCTCTGgag
aacaaaaatttgtttgcAAAGATATGTTCATTTCCACCTTGGGATACCGT
TTCGACAAATTCATTTCAACCGCGTTGAGTACAACCTCAAATTTTGGAGT
GACTTTACAAGATAAAAGGGGTAAACATCCGCCAAAGCATGCAATGTCAG
ATTCTGGAAAACAGACTGCCATTCAACATGTTATGTCATTCAATCCTCAA
ATTTCTCATTATCGGCGAGAGCATGCCCCAAATCGGTTATATCTTCCATC
AGAGCTGACCATTCAAGAAATGTACGAGGATTATCTTGATCAAAGGAAAG
AAAACAATGAGAATACCATGTCATATGTTCAGTATACTCGAATTGTGAAA
AGTCAAAACATATCGTTTGCAAAGCTTGGAGATGATGAGTGTGAGATGTG
TGAAAGTCATAAACTTCATCTGAGAGATGTAAAGCAAAAAGACACTAGCA
CGAGTGATGACAGGCTCGAAACTAGGATTTTCAATGCCAAAAGAATTGAC
AAGGATAAAGACATGTCTTGTGGAAAAGGTGATTGCTTAGCGTGTGTAGT
TTGGCTAGATCACCAAACGAAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057496-exon-scaffold_289-1491911889:319359..320303 | TCONS_00057496-exon-scaffold_289-1491911889:319359..320303 | Clytia hemisphaerica | exon |
| TCONS_00057496-exon-scaffold_289-1510915933:319359..320303 | TCONS_00057496-exon-scaffold_289-1510915933:319359..320303 | Clytia hemisphaerica | exon |
| TCONS_00057496-exon-scaffold_289-1575043694:319359..320303 | TCONS_00057496-exon-scaffold_289-1575043694:319359..320303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:319359..320303 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019480 | Dihydroorotate_DH_Fe-S-bd |
Blast
The following BLAST results are available for this feature:
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