TCONS_00057492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057492
Unique NameTCONS_00057492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057492 ID=TCONS_00057492|Name=TCONS_00057492|organism=Clytia hemisphaerica|type=transcript|length=819bp
TCTCTCGTTGAAACCTAATTTCAATCCATGATGTTCATCTTTATCTGCTT
CCTTCGCTGTGATGTTACTGCGAGCTTTTTGTCTTCTTGTTTTAATCCTC
TCAAGTAAGAGTGGCGTTATTGTAACACAATTTCCACATTCGAAGCGCCG
GTTTTTATATTGCAGACAAAGCTGAATCTGATAGGCCGGGAGTTCAGAGC
ACGCATAATGGACACGTCTATCACATCTCCTACATCGTAAGGTGTCGTTA
TCTGCTATGATGGTGTTTGTTAAACAGTTATTGGGTGTGCAATATCcatt
attttgttgaatttccttgttagaattttcgTTGATTTCCGCCATATTGT
TGCATTTTCAGGATCGTGGCGGATCTAACGGCAGAAATTTTGGCAGacag
aaaatcatttttaagctaGCTCACGAAATAAATGATGAAAAtcgatttca
ttttcattttacttTGAAGATTAGCACTCATTTTAATATAGAATCAGGGT
TTTCGACTCGTCTTTTATGGCCTTTTATTGAAAGATTTCTGATAGCACGA
ATAGTAATTAAATCTCTTTCTCACAAACAcacactgggaacccttcccgc
actagaaaaattggccaaaacatcGTCCCCGGTGGTAAATTATACTCCAA
CTTTTAGGTGGTCAATTAAATCAATCTTCACTGCATAATATACgttcttc
agaatttaaagttcgcacgataattgctattttagcactttctttcatcg
aatatttcgattcttgaggggttcggtggctttaggctatattccaagct
ttattggagcaaatttgag
Run BLAST on NCBI

protein sequence of TCONS_00057492-protein

>TCONS_00057492-protein ID=TCONS_00057492-protein|Name=TCONS_00057492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MAEINENSNKEIQQNNGYCTPNNCLTNTIIADNDTLRCRRCDRRVHYACS
ELPAYQIQLCLQYKNRRFECGNCVTITPLLLERIKTRRQKARSNITAKEA
DKDEHHGLKLGFNER
Run BLAST on NCBI

transcript from alignment at scaffold_289:233773..234591

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057492 ID=TCONS_00057492|Name=TCONS_00057492|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at scaffold_289:233773..234591 (Clytia hemisphaerica)
ctcaaatttgctccaataaagcttggaatatagcctaaagccaccgaacc
cctcaagaatcgaaatattcgatgaaagaaagtgctaaaatagcaattat
cgtgcgaactttaaattctgaagaacGTATATTATGCAGTGAAGATTGAT
TTAATTGACCACCTAAAAGTTGGAGTATAATTTACCACCGGGGACgatgt
tttggccaatttttctagtgcgggaagggttcccagtgtgTGTTTGTGAG
AAAGAGATTTAATTACTATTCGTGCTATCAGAAATCTTTCAATAAAAGGC
CATAAAAGACGAGTCGAAAACCCTGATTCTATATTAAAATGAGTGCTAAT
CTTCAaagtaaaatgaaaatgaaatcgaTTTTCATCATTTATTTCGTGAG
CtagcttaaaaatgattttctgtCTGCCAAAATTTCTGCCGTTAGATCCG
CCACGATCCTGAAAATGCAACAATATGGCGGAAATCAAcgaaaattctaa
caaggaaattcaacaaaataatgGATATTGCACACCCAATAACTGTTTAA
CAAACACCATCATAGCAGATAACGACACCTTACGATGTAGGAGATGTGAT
AGACGTGTCCATTATGCGTGCTCTGAACTCCCGGCCTATCAGATTCAGCT
TTGTCTGCAATATAAAAACCGGCGCTTCGAATGTGGAAATTGTGTTACAA
TAACGCCACTCTTACTTGAGAGGATTAAAACAAGAAGACAAAAAGCTCGC
AGTAACATCACAGCGAAGGAAGCAGATAAAGATGAACATCATGGATTGAA
ATTAGGTTTCAACGAGAGA

Coding sequence (CDS) from alignment at scaffold_289:233773..234591

>TCONS_00057492 ID=TCONS_00057492|Name=TCONS_00057492|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_289:233773..234591 (Clytia hemisphaerica)
ATGGCGGAAATCAAcgaaaattctaacaaggaaattcaacaaaataatgG
ATATTGCACACCCAATAACTGTTTAACAAACACCATCATAGCAGATAACG
ACACCTTACGATGTAGGAGATGTGATAGACGTGTCCATTATGCGTGCTCT
GAACTCCCGGCCTATCAGATTCAGCTTTGTCTGCAATATAAAAACCGGCG
CTTCGAATGTGGAAATTGTGTTACAATAACGCCACTCTTACTTGAGAGGA
TTAAAACAAGAAGACAAAAAGCTCGCAGTAACATCACAGCGAAGGAAGCA
GATAAAGATGAACATCATGGATTGAAATTAGGTTTCAACGAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036233XLOC_036233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057492-exon-scaffold_289-1491911889:233773..234591TCONS_00057492-exon-scaffold_289-1491911889:233773..234591Clytia hemisphaericaexon
TCONS_00057492-exon-scaffold_289-1510915933:233773..234591TCONS_00057492-exon-scaffold_289-1510915933:233773..234591Clytia hemisphaericaexon
TCONS_00057492-exon-scaffold_289-1575043694:233773..234591TCONS_00057492-exon-scaffold_289-1575043694:233773..234591Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057492-proteinTCONS_00057492-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:233773..234591 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.599862	0.348607	0.2862	0.328462	0.0821187	0.0661841	0.382216	1.18472	0.065697	0.0679637	0.862715	0.452978	0.224763	0	0.255322	0.171805	0.721058	0.273017	0.658024	0.22323	0.234635	0.104788	0.900994	0.752544	0.0643467	0.324651	0.573402	0.37748	0.459756	0.55407
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top