TCONS_00057491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057491
Unique NameTCONS_00057491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057491 ID=TCONS_00057491|Name=TCONS_00057491|organism=Clytia hemisphaerica|type=transcript|length=372bp
NATTAAGTTACAAGGTAACGACACTTTGTTATTTGGGTGCATGTATAGAA
GTCCTACCAACACAGAGACATCTGCCAAAAATAATGCTTCACTCAACCTA
CTACTTAAGGAAATTGGCATGAATAATAAGTATACTCATAAATGCATTGT
TGGAGATTTCAATTACAAAGACATCAACTAGGAGTATTGGTCGACACCCC
ACGACGAAACAAAGGAAGATGAACAGTTTCTCGATGCCTTGAGGGACACA
TTCTTCTTCCAGCACGTTGACGAGCCGACTAGAGCCAGAGGAACAGATGA
AccatcgttaatcgatttgatACTCACTAATGAAGAAGACCAAGTCAATA
AAATCAACTACTTAGCTCCTCT
Run BLAST on NCBI

transcript from alignment at scaffold_289:194537..194908

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057491 ID=TCONS_00057491|Name=TCONS_00057491|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at scaffold_289:194537..194908 (Clytia hemisphaerica)
AGAGGAGCTAAGTAGTTGATTTTATTGACTTGGTCTTCTTCATTAGTGAG
TatcaaatcgattaacgatggTTCATCTGTTCCTCTGGCTCTAGTCGGCT
CGTCAACGTGCTGGAAGAAGAATGTGTCCCTCAAGGCATCGAGAAACTGT
TCATCTTCCTTTGTTTCGTCGTGGGGTGTCGACCAATACTCCTAGTTGAT
GTCTTTGTAATTGAAATCTCCAACAATGCATTTATGAGTATACTTATTAT
TCATGCCAATTTCCTTAAGTAGTAGGTTGAGTGAAGCATTATTTTTGGCA
GATGTCTCTGTGTTGGTAGGACTTCTATACATGCACCCAAATAACAAAGT
GTCGTTACCTTGTAACTTAATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036232XLOC_036232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057491-exon-scaffold_289-1491911889:194537..194908TCONS_00057491-exon-scaffold_289-1491911889:194537..194908Clytia hemisphaericaexon
TCONS_00057491-exon-scaffold_289-1510915933:194537..194908TCONS_00057491-exon-scaffold_289-1510915933:194537..194908Clytia hemisphaericaexon
TCONS_00057491-exon-scaffold_289-1575043694:194537..194908TCONS_00057491-exon-scaffold_289-1575043694:194537..194908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:194537..194908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.73791	3.73997	4.53501	2.65322	0	0.330196	0	0.261973	0.183414	0.681562	1.7063	0.638484	0.501375	0.269028	0.560919	0.132633	0	0	0	0	0.952655	1.09669	0	0.555478	0.956836	1.28157	1.03145	0.318512	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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