TCONS_00057488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057488
Unique NameTCONS_00057488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057488 ID=TCONS_00057488|Name=TCONS_00057488|organism=Clytia hemisphaerica|type=transcript|length=422bp
CATTTGAGCACGAAAAAAAGACTTCGTATTTTTGTGTTTCTTGAACAGTA
AAGTATATACCTTTGGTCCATAAAAgattaacaaaaacaaattttgagca
GTCGGCAAGGTGATAAGATGAACAGCTCTTCTAACGTCTTCGTCGCTTTG
AAGATAATAAATCGGAAAAATGATTATATAAGTGAAAGTAACTGTTAAGG
TTGAATATGCGATTGGCATTGCTTCATTGAACGGTCCTGGTAAATTTCGA
CCTCTAAAAGCTTGTACAGCTGAAAACAAATGTTGTATTATGAGAAATAA
GATTTGTAGATTGGTATGTAATCCTGTGTTACATTGTGAAGTTATGGTGA
AAGTAGCGTGGTGAATTTCCGTTAAAATCTTCGGTGGATAAGTCAGTAAA
GACCATATCAAGACAGAGCTGT
Run BLAST on NCBI

protein sequence of TCONS_00057488-protein

>TCONS_00057488-protein ID=TCONS_00057488-protein|Name=TCONS_00057488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
SSVLIWSLLTYPPKILTEIHHATFTITSQCNTGLHTNLQILFLIIQHLFS
AVQAFRGRNLPGPFNEAMPIAYSTLTVTFTYIIIFPIYYLQSDEDVRRAV
HLITLPTAQNLFLLIFYGPKVYTLLFKKHKNTKSFFRAQM
Run BLAST on NCBI

transcript from alignment at scaffold_289:88799..89220

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057488 ID=TCONS_00057488|Name=TCONS_00057488|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at scaffold_289:88799..89220 (Clytia hemisphaerica)
ACAGCTCTGTCTTGATATGGTCTTTACTGACTTATCCACCGAAGATTTTA
ACGGAAATTCACCACGCTACTTTCACCATAACTTCACAATGTAACACAGG
ATTACATACCAATCTACAAATCTTATTTCTCATAATACAACATTTGTTTT
CAGCTGTACAAGCTTTTAGAGGTCGAAATTTACCAGGACCGTTCAATGAA
GCAATGCCAATCGCATATTCAACCTTAACAGTTACTTTCACTTATATAAT
CATTTTTCCGATTTATTATCTTCAAAGCGACGAAGACGTTAGAAGAGCTG
TTCATCTTATCACCTTGCCGACtgctcaaaatttgtttttgttaatcTTT
TATGGACCAAAGGTATATACTTTACTGTTCAAGAAACACAAAAATACGAA
GTCTTTTTTTCGTGCTCAAATG

Coding sequence (CDS) from alignment at scaffold_289:88799..89220

>TCONS_00057488 ID=TCONS_00057488|Name=TCONS_00057488|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_289:88799..89220 (Clytia hemisphaerica)
AGCTCTGTCTTGATATGGTCTTTACTGACTTATCCACCGAAGATTTTAAC
GGAAATTCACCACGCTACTTTCACCATAACTTCACAATGTAACACAGGAT
TACATACCAATCTACAAATCTTATTTCTCATAATACAACATTTGTTTTCA
GCTGTACAAGCTTTTAGAGGTCGAAATTTACCAGGACCGTTCAATGAAGC
AATGCCAATCGCATATTCAACCTTAACAGTTACTTTCACTTATATAATCA
TTTTTCCGATTTATTATCTTCAAAGCGACGAAGACGTTAGAAGAGCTGTT
CATCTTATCACCTTGCCGACtgctcaaaatttgtttttgttaatcTTTTA
TGGACCAAAGGTATATACTTTACTGTTCAAGAAACACAAAAATACGAAGT
CTTTTTTTCGTGCTCAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036229XLOC_036229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057488-exon-scaffold_289-1491911889:88799..89220TCONS_00057488-exon-scaffold_289-1491911889:88799..89220Clytia hemisphaericaexon
TCONS_00057488-exon-scaffold_289-1510915933:88799..89220TCONS_00057488-exon-scaffold_289-1510915933:88799..89220Clytia hemisphaericaexon
TCONS_00057488-exon-scaffold_289-1575043694:88799..89220TCONS_00057488-exon-scaffold_289-1575043694:88799..89220Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057488-proteinTCONS_00057488-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:88799..89220 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.214142	0.200477	0	0	0	0	0.443101	0.690247	0.472898	0.101498	0.125038	0.384479	0.708237	0	0	0	0.190977	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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