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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=transcript|length=2307bp
CACCCATCCCTTTtaaagcttacagtgtaagtgAGGCAGGTAAAATCAAT
CATGCTGTCTGTTTTAAggtttatctgatattccgatggcggattggctg
CCGCcaacgctaaagctctaaaggagcgggccaatttcccatcggagagg
aattaTAGTCGGCCATTGATGTGCCGCATTCCCTAGTCGGGTTTAACAGC
CCTTGCGCTTAAACCCataaatattttggttggacccgccaatccccgaa
aacgagagctgggttaccagacctcctgctgaaaaattcttgacgtggtc
tcgcaaaattccgtaatgtaaacatTCCAGACGTTGAAAaatttcccgac
cttcagagctttagcgtgtcggatgaaaatttcaccatctggatGTCAGA
TAATTTTAATGTTACACCAGCAGCATGAGTagctattttttgaaaaaaag
atttctttattaatttcttatttttaacaGTAATTATTGTACAtgcattt
ttaagaaaaaaggaAACAGTCCATATCCGTCTGAAGTACATCTATGAGTG
GCTACAGCCGTGAAAGCAGTATTATTTTGAATATGAAGTTCATCAAAATT
CAGAAGCTTTGTTATTCACACCATTCGATTCATCCATATAAGCTTTCCTC
ATTTCACTTTTCAAAGTCGCAATCACGCCATGAAGTTCCTTTTCAAGACT
TTGCAGTTTCTGATATTGCGGTAACATTTCATAGGATaaaactttctttg
tttcttgtCGCTTTCGTTTCATTTTTGACGATGAATTTCCCTTTATAAAG
ACGATAATCTCACTGAGGATTCCTATGAAAACTAAGCAACCGGCAGCGAT
GGCTGTATACAAAGCTAACCCGCCATCTTGTTTATTAAACATCTCTTCTA
TACTACGTGTATAGTAATGAACGACAACATACGGTGGGACGTATCTGGCA
ATCATACCACGTGACATTGCTACCGGTATCTCGTCGTCATCGTACTCAAT
ATCAAACCAACTATATTTTTTATGGTAGTAAATGTACGCGTATATTTGAG
CCGTGATCATATATTCGGATTCAATTTTCAAGTCCGCTGGCTTCTCAGTA
TTGAAATAGACAGAGGCTACATTAGAATCCATTAAAATTCCATCAATATC
TTTGTTTAGAAGAGCACTGTACATTTCTTCATAGCTGTTGTACTGTTTCG
GATTTCCAGACAGTTGACTGCGGACAATACTGAGTTCAGTGGAATGTCTG
AGAACACCTATATCTTTTCCGCCTGTACTGTAATCTTTTTGGACAGCCTC
CATGACGGTTGTCGTAATGATAGCCGTTAACATTAAACCGACCAACATCC
AGGCTAAACATAACAAACGACTTATAAAATGTTTTGGAACTTTATCTCCG
TAACCAACTGTTGTCATGGTAACAAAACAATACCAAAATGAAGTCCAAAG
TCCAGCACCGAATGTGTTTTGAAAATCGGGATTTGAATTTCGTTCGATAA
ACCAAATAATAGCCGCCAAATTTATCGCCACTGTGATTGAAAAAGAAACG
ACACCGAGACAGTTAGAGATTCCTTCTAAAAATCTTAACAATAATAGAAT
GTCCTCAGTTCGGACGATCAAAACAGATTTTTCGGATTTAACAACGGGCA
CTTTGATAAAAAGTGTTCCATTTTTTGATGCATCGAATGTGGTTGCAGAT
ACAATGAAAATATCGCCGGAATCTTCACTCATATTAAGTTTTTGCAATAA
ACGTGTTTTATTGGTTTCCAGaagcaaattaaaaatttcttgTTGTGTGT
CATAGTGATGTTTCGGTAGATTATGAAATTCGATTAGTTTCGATGGTTCC
TCTTTCCCTTCACAATCTGCTACTGcgactttttctttgtttaactCTTC
ATCCAAAGTTAAATGAATCAAAGACTGTGTAACACCGAAACCTTCAAATC
CTTTGACTTTTTTATCCGAATAATATGGCTTATTATTTATCCAACTTATA
AAATAAGCGTTTGTTGTTCCGTTaggaaagggtcccaaaaatgTGGTGTT
TTGGTTGGCAAAGCATGAACAAGGGTCCATATCTCCGCCCATATCTCCGC
TCATTTCCATACAATGTCTAAGCATTCCGCCCATGTCATCGTCACCGTCC
TCGCTAGCAATGGCGTGATGGCAAATCATAAATAAAAGCAGAAATCTCCT
CATATTTTGAGACTTTAGTAAGTTTACGTTAAAATGGTACCCTGTTTTTT
ACTCGCTATGAAATTTTAACTgatagaaaaactttttttatccgTCCTTT
CCCCCAA Run BLAST on NCBI protein sequence of TCONS_00057487-protein >TCONS_00057487-protein ID=TCONS_00057487-protein|Name=TCONS_00057487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp
MRRFLLLFMICHHAIASEDGDDDMGGMLRHCMEMSGDMGGDMDPCSCFAN
QNTTFLGPFPNGTTNAYFISWINNKPYYSDKKVKGFEGFGVTQSLIHLTL
DEELNKEKVAVADCEGKEEPSKLIEFHNLPKHHYDTQQEIFNLLLETNKT
RLLQKLNMSEDSGDIFIVSATTFDASKNGTLFIKVPVVKSEKSVLIVRTE
DILLLLRFLEGISNCLGVVSFSITVAINLAAIIWFIERNSNPDFQNTFGA
GLWTSFWYCFVTMTTVGYGDKVPKHFISRLLCLAWMLVGLMLTAIITTTV
MEAVQKDYSTGGKDIGVLRHSTELSIVRSQLSGNPKQYNSYEEMYSALLN
KDIDGILMDSNVASVYFNTEKPADLKIESEYMITAQIYAYIYYHKKYSWF
DIEYDDDEIPVAMSRGMIARYVPPYVVVHYYTRSIEEMFNKQDGGLALYT
AIAAGCLVFIGILSEIIVFIKGNSSSKMKRKRQETKKVLSYEMLPQYQKL
QSLEKELHGVIATLKSEMRKAYMDESNGVNNKASEF Run BLAST on NCBI transcript from alignment at scaffold_289:78523..80829 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=transcript|length=2307bp|location=Sequence derived from alignment at scaffold_289:78523..80829 (Clytia hemisphaerica)
TTGGGGGAAAGGAcggataaaaaaagtttttctatcAGTTAAAATTTCAT
AGCGAGTAAAAAACAGGGTACCATTTTAACGTAAACTTACTAAAGTCTCA
AAATATGAGGAGATTTCTGCTTTTATTTATGATTTGCCATCACGCCATTG
CTAGCGAGGACGGTGACGATGACATGGGCGGAATGCTTAGACATTGTATG
GAAATGAGCGGAGATATGGGCGGAGATATGGACCCTTGTTCATGCTTTGC
CAACCAAAACACCAcatttttgggaccctttcctAACGGAACAACAAACG
CTTATTTTATAAGTTGGATAAATAATAAGCCATATTATTCGGATAAAAAA
GTCAAAGGATTTGAAGGTTTCGGTGTTACACAGTCTTTGATTCATTTAAC
TTTGGATGAAGagttaaacaaagaaaaagtcgCAGTAGCAGATTGTGAAG
GGAAAGAGGAACCATCGAAACTAATCGAATTTCATAATCTACCGAAACAT
CACTATGACACACAAcaagaaatttttaatttgcttCTGGAAACCAATAA
AACACGTTTATTGCAAAAACTTAATATGAGTGAAGATTCCGGCGATATTT
TCATTGTATCTGCAACCACATTCGATGCATCAAAAAATGGAACACTTTTT
ATCAAAGTGCCCGTTGTTAAATCCGAAAAATCTGTTTTGATCGTCCGAAC
TGAGGACATTCTATTATTGTTAAGATTTTTAGAAGGAATCTCTAACTGTC
TCGGTGTCGTTTCTTTTTCAATCACAGTGGCGATAAATTTGGCGGCTATT
ATTTGGTTTATCGAACGAAATTCAAATCCCGATTTTCAAAACACATTCGG
TGCTGGACTTTGGACTTCATTTTGGTATTGTTTTGTTACCATGACAACAG
TTGGTTACGGAGATAAAGTTCCAAAACATTTTATAAGTCGTTTGTTATGT
TTAGCCTGGATGTTGGTCGGTTTAATGTTAACGGCTATCATTACGACAAC
CGTCATGGAGGCTGTCCAAAAAGATTACAGTACAGGCGGAAAAGATATAG
GTGTTCTCAGACATTCCACTGAACTCAGTATTGTCCGCAGTCAACTGTCT
GGAAATCCGAAACAGTACAACAGCTATGAAGAAATGTACAGTGCTCTTCT
AAACAAAGATATTGATGGAATTTTAATGGATTCTAATGTAGCCTCTGTCT
ATTTCAATACTGAGAAGCCAGCGGACTTGAAAATTGAATCCGAATATATG
ATCACGGCTCAAATATACGCGTACATTTACTACCATAAAAAATATAGTTG
GTTTGATATTGAGTACGATGACGACGAGATACCGGTAGCAATGTCACGTG
GTATGATTGCCAGATACGTCCCACCGTATGTTGTCGTTCATTACTATACA
CGTAGTATAGAAGAGATGTTTAATAAACAAGATGGCGGGTTAGCTTTGTA
TACAGCCATCGCTGCCGGTTGCTTAGTTTTCATAGGAATCCTCAGTGAGA
TTATCGTCTTTATAAAGGGAAATTCATCGTCAAAAATGAAACGAAAGCGa
caagaaacaaagaaagttttATCCTATGAAATGTTACCGCAATATCAGAA
ACTGCAAAGTCTTGAAAAGGAACTTCATGGCGTGATTGCGACTTTGAAAA
GTGAAATGAGGAAAGCTTATATGGATGAATCGAATGGTGTGAATAACAAA
GCTTCTGAATTTTGATGAACTTCATATTCAAAATAATACTGCTTTCACGG
CTGTAGCCACTCATAGATGTACTTCAGACGGATATGGACTGTTtcctttt
ttcttaaaaatgcaTGTACAATAATTACtgttaaaaataagaaattaata
aagaaatctttttttcaaaaaatagctACTCATGCTGCTGGTGTAACATT
AAAATTATCTGACatccagatggtgaaattttcatccgacacgctaaagc
tctgaaggtcgggaaattTTTCAACGTCTGGAatgtttacattacggaat
tttgcgagaccacgtcaagaatttttcagcaggaggtctggtaacccagc
tctcgttttcggggattggcgggtccaaccaaaatatttatGGGTTTAAG
CGCAAGGGCTGTTAAACCCGACTAGGGAATGCGGCACATCAATGGCCGAC
TAtaattcctctccgatgggaaattggcccgctcctttagagctttagcg
ttgGCGGcagccaatccgccatcggaatatcagataaaccTTAAAACAGA
CAGCATGATTGATTTTACCTGCCTcacttacactgtaagctttaAAAGGG
ATGGGTG Coding sequence (CDS) from alignment at scaffold_289:78523..80829 >TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_289:78523..80829 (Clytia hemisphaerica)
ATGAGGAGATTTCTGCTTTTATTTATGATTTGCCATCACGCCATTGCTAG
CGAGGACGGTGACGATGACATGGGCGGAATGCTTAGACATTGTATGGAAA
TGAGCGGAGATATGGGCGGAGATATGGACCCTTGTTCATGCTTTGCCAAC
CAAAACACCAcatttttgggaccctttcctAACGGAACAACAAACGCTTA
TTTTATAAGTTGGATAAATAATAAGCCATATTATTCGGATAAAAAAGTCA
AAGGATTTGAAGGTTTCGGTGTTACACAGTCTTTGATTCATTTAACTTTG
GATGAAGagttaaacaaagaaaaagtcgCAGTAGCAGATTGTGAAGGGAA
AGAGGAACCATCGAAACTAATCGAATTTCATAATCTACCGAAACATCACT
ATGACACACAAcaagaaatttttaatttgcttCTGGAAACCAATAAAACA
CGTTTATTGCAAAAACTTAATATGAGTGAAGATTCCGGCGATATTTTCAT
TGTATCTGCAACCACATTCGATGCATCAAAAAATGGAACACTTTTTATCA
AAGTGCCCGTTGTTAAATCCGAAAAATCTGTTTTGATCGTCCGAACTGAG
GACATTCTATTATTGTTAAGATTTTTAGAAGGAATCTCTAACTGTCTCGG
TGTCGTTTCTTTTTCAATCACAGTGGCGATAAATTTGGCGGCTATTATTT
GGTTTATCGAACGAAATTCAAATCCCGATTTTCAAAACACATTCGGTGCT
GGACTTTGGACTTCATTTTGGTATTGTTTTGTTACCATGACAACAGTTGG
TTACGGAGATAAAGTTCCAAAACATTTTATAAGTCGTTTGTTATGTTTAG
CCTGGATGTTGGTCGGTTTAATGTTAACGGCTATCATTACGACAACCGTC
ATGGAGGCTGTCCAAAAAGATTACAGTACAGGCGGAAAAGATATAGGTGT
TCTCAGACATTCCACTGAACTCAGTATTGTCCGCAGTCAACTGTCTGGAA
ATCCGAAACAGTACAACAGCTATGAAGAAATGTACAGTGCTCTTCTAAAC
AAAGATATTGATGGAATTTTAATGGATTCTAATGTAGCCTCTGTCTATTT
CAATACTGAGAAGCCAGCGGACTTGAAAATTGAATCCGAATATATGATCA
CGGCTCAAATATACGCGTACATTTACTACCATAAAAAATATAGTTGGTTT
GATATTGAGTACGATGACGACGAGATACCGGTAGCAATGTCACGTGGTAT
GATTGCCAGATACGTCCCACCGTATGTTGTCGTTCATTACTATACACGTA
GTATAGAAGAGATGTTTAATAAACAAGATGGCGGGTTAGCTTTGTATACA
GCCATCGCTGCCGGTTGCTTAGTTTTCATAGGAATCCTCAGTGAGATTAT
CGTCTTTATAAAGGGAAATTCATCGTCAAAAATGAAACGAAAGCGacaag
aaacaaagaaagttttATCCTATGAAATGTTACCGCAATATCAGAAACTG
CAAAGTCTTGAAAAGGAACTTCATGGCGTGATTGCGACTTTGAAAAGTGA
AATGAGGAAAGCTTATATGGATGAATCGAATGGTGTGAATAACAAAGCTT
CTGAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057487-exon-scaffold_289-1491911889:78523..80829 | TCONS_00057487-exon-scaffold_289-1491911889:78523..80829 | Clytia hemisphaerica | exon |
| TCONS_00057487-exon-scaffold_289-1510915933:78523..80829 | TCONS_00057487-exon-scaffold_289-1510915933:78523..80829 | Clytia hemisphaerica | exon |
| TCONS_00057487-exon-scaffold_289-1575043694:78523..80829 | TCONS_00057487-exon-scaffold_289-1575043694:78523..80829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:78523..80829 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004970 | ionotropic glutamate receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0004970 |
ionotropic glutamate receptor activity |
Blast
The following BLAST results are available for this feature:
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