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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057482 ID=TCONS_00057482|Name=TCONS_00057482|organism=Clytia hemisphaerica|type=transcript|length=773bp
GAGATAAATAACATACGATGTCGAAAATATCATGACAAAGGATGGGTTGT
ATTCCAAAAAAGAGTTGAGCCGGCAAAATTTCCTTTCAACAAAAAGTCAT
GNAGTATACCATACAAAATGGTTGATGGCATACTGGAAGACTGCGATTAT
TCTTTCTCCTCTTGTGACGAAGTTGTCAACAAAGGTCTGCTGGAGGATAG
AATTGAAGCTGTTTTCCCCATCTTCGTCTCAGCTGTCAACGAGATAAAGA
ACATACGATGTCGAAAATATCATGACAAAGGATGGGTTGTATTCCAAAAA
AGAGTTGAGCCGGCAAAATTTCCTTTCAACAAAAAGTCATGGCAAGAATA
CAAAGAGGGATTTGAGGAAAGTGAGGACGATTTTTGGCTTGGTAACGAAC
TACTTCATCAATGGACAAAACACAAGGAGAATGAGTTGTTGGTTCTTCTT
GAATTCGATGAATATGGCTGGCATGGTAAGAACATTGGATCAGAATTCAG
AACTCCCTGCCTGgaagtgcttgggattcgaacacagtccattgcggtgc
aagtctgtgatcgaaaccttcacactaccaatcggcaTATCTGCAGTGTG
TTTATTTATTTCCATCATCAGCCGAAAGCCGGCACAGATTCAACGTTGGT
CCGGAAAACGAATACTATCAACTGTACGTCAGCGATACAGCGAGCTTCGA
TGTGACAACAGAAATGGCGAGTTACCCTTCATTCAATTCTTTTATGCACA
CCTTAAACGGTGGCCGATTCCAT Run BLAST on NCBI protein sequence of TCONS_00057482-protein >TCONS_00057482-protein ID=TCONS_00057482-protein|Name=TCONS_00057482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
EINNIRCRKYHDKGWVVFQKRVEPAKFPFNKKSXSIPYKMVDGILEDCDY
SFSSCDEVVNKGLLEDRIEAVFPIFVSAVNEIKNIRCRKYHDKGWVVFQK
RVEPAKFPFNKKSWQEYKEGFEESEDDFWLGNELLHQWTKHKENELLVLL
EFDEYGWHGKNIGSEFRTPCLEVLGIRTQSIAVQVCDRNLHTTNRHICSV
FIYFHHQPKAGTDSTLVRKTNTINCTSAIQRASM Run BLAST on NCBI transcript from alignment at scaffold_289:434297..436402- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057482 ID=TCONS_00057482|Name=TCONS_00057482|organism=Clytia hemisphaerica|type=transcript|length=2106bp|location=Sequence derived from alignment at scaffold_289:434297..436402- (Clytia hemisphaerica)
GAGATAAATAACATACGATGTCGAAAATATCATGACAAAGGATGGGTTGT
ATTCCAAAAAAGAGTTGAGCCGGCAAAATTTCCTTTCAACAAAAAGTCAT
GNAGTATACCATACAAAATGGTTGATGGCATACTGGAAGACTGCGATTAT
TCTTTCTCCTCTTGTGACGAAGTTGTCAACAAAGGTCTGCTGGAGGATAG
AATTGAAGCTGTTTTCCCCATCTTCGTCTCAGGTATAGTCATGATTTCGA
AATTTTTGTTGTTATAAAGGTAGATTGTCGTTTTTTGTAATCTCAAGGTC
CTGCCGACGCACCGGATATACGGGCGCACGCAAAATGTCTGGTATCAGAT
GAGAAAATGCTTTTCCATCGGACAGTTCAAACAGCGGACCACATGTTAAT
TAATCCAGTGCGTCTGTTGAACGCTAAAACGCAAAAGAAACAAGTTTGTT
ATTAGTCCAGTGTCAAGAATATACGTGATGTGACCATGGAGAAACACTAA
AAAGTTTTGTAATAATACGTCAGTCTAGTGCCAGCCGGCACACAACGTCA
AAACAACGTCCATTTGACATTCACAACATCCATATAACGTTGTTTGAACG
TTAAAACAACGTTGTGTGCCAGCTGGGGTGCGTCGACAGGGTCATCAACG
GTCTAGATAATTTAGAATTCGACTCTCTCTAATTCGAACTAAAATATTGA
CTAGAAATTCGTATAAAATACTTTCTCTAATTCGAAGAAAATTTTTTCTT
GGTCCCTTGAAGATCGAATTAAAGAGATACAGCTGTAAACCAACAATAAA
TTTTCTTTCTAGCTGTCAACGAGATAAAGAACATACGATGTCGAAAATAT
CATGACAAAGGATGGGTTGTATTCCAAAAAAGAGTTGAGCCGGCAAAATT
TCCTTTCAACAAAAAGTCATGGCAAGAATACAAAGAGGGTAAAACATTCA
TTTTATTACTATTTACTAATTATAATGTCATCAATACTTAGAAGACTATA
ATCAAGCTGTGTCAGCAACATATTAGTATATATTGTATTTGGAGCTAAAA
TTCCATCATTTCTTTGCTTATCTTTGCCATGTCGGAATTATTGCTTAGCA
TGCTAAACTATGCGAAATACGGTTTGTTACGAATGAAGAATCAGGTTTGA
GTCAGTTTTTGAAAGTAGTAGGGTAATTTGAGTAATCCTGTCAGAAAGAG
TGGTATAGTATTTTTGACTTAAACCTGGCAGAAAGAGTGACGCCTTTCCT
TCGGTAGATAATTATTTTTGACTTGGACCTCTTTAACTCGAATGTCTCTT
TAATCGAAACAATATTTAAGGTCTTTTCAGTTAACAATGCCCTATAAACC
TTCTTATCTCGAAATTTCCTTAACTCGAACAAATTTGTGTTCCCCGTGCG
GGTTTCCGTTATCGAGGCTCAACTTAATACTCATAACACCCCCTCCTCAA
AGACCTGGTAGGATTTTTTCAGTCCAGCAGGGGTAATAAATAGAACGGGA
ATGACGATGGGAATTGAAAATCCCATATCTTTTATGATTTTAATTCCATT
CATATTTTCAAGTCAGAAAATTCATTGAGAATCTGGTGAAGACATTTTTG
ACAATACTTTCAGTGGTAAAGGACCATCTTTCCCAGTGGGTCTGTGTGAG
AAAGGTTGTCTTATGAAAAAGAGTTACTTTCGTTTTTTAAGGATTTGAGG
AAAGTGAGGACGATTTTTGGCTTGGTAACGAACTACTTCATCAATGGACA
AAACACAAGGAGAATGAGTTGTTGGTTCTTCTTGAATTCGATGAATATGG
CTGGCATGGTAAGAACATTGGATCAGAATTCAGAACTCCCTGCCTGGAAG
TGCTTGGGATTCGAACACAGTCCATTGCGGTGCAAGTCTGTGATCGAAAC
CTTCACACTACCAATCGGCATATCTGCAGTGTGTTTATTTATTTCCATCA
TCAGCCGAAAGCCGGCACAGATTCAACGTTGGTCCGGAAAACGAATACTA
TCAACTGTACGTCAGCGATACAGCGAGCTTCGATGTGACAACAGAAATGG
CGAGTTACCCTTCATTCAATTCTTTTATGCACACCTTAAACGGTGGCCGA
TTCCAT Coding sequence (CDS) from alignment at scaffold_289:434297..436402- >TCONS_00057482 ID=TCONS_00057482|Name=TCONS_00057482|organism=Clytia hemisphaerica|type=CDS|length=2115bp|location=Sequence derived from alignment at scaffold_289:434297..436402- (Clytia hemisphaerica)
GATTTGAGGAAAGTGAGGACGATTTTTGGCTTGGTAACGAACTACTTCAT
CAATGGACAAAACACAAGGAGAATGAGTTGTTGGTTCTTCTTGAATTCGA
TGAATATGGCTGGCATGGTAAGAACATTGGATCAGAATTCAGAACTCCCT
GCCTGGAAGTGCTTGGGATTCGAACACAGTCCATTGCGGTGCAAGTCTGT
GATCGAAACCTTCACACTACCAATCGGCATATCTGCAGTGTGTTTATTTA
TTTCCATCATCAGCCGAAAGCCGGCACAGATTCAACGTTGGTCCGGAAAA
CGAATACTATCAACTGTACGTCAGCGATACAGCGAGCTTCGATGTGACTG
TCAACGAGATAAAGAACATACGATGTCGAAAATATCATGACAAAGGATGG
GTTGTATTCCAAAAAAGAGTTGAGCCGGCAAAATTTCCTTTCAACAAAAA
GTCATGGCAAGAATACAAAGAGGGAGATAAATAACATACGATGTCGAAAA
TATCATGACAAAGGATGGGTTGTATTCCAAAAAAGAGTTGAGCCGGCAAA
ATTTCCTTTCAACAAAAAGTCATGNAGTATACCATACAAAATGGTTGATG
GCATACTGGAAGACTGCGATTATTCTTTCTCCTCTTGTGACGAAGTTGTC
AACAAAGGTCTGCTGGAGGATAGAATTGAAGCTGTTTTCCCCATCTTCGT
CTCAGGATTTGAGGAAAGTGAGGACGATTTTTGGCTTGGTAACGAACTAC
TTCATCAATGGACAAAACACAAGGAGAATGAGTTGTTGGTTCTTCTTGAA
TTCGATGAATATGGCTGGCATGGTAAGAACATTGGATCAGAATTCAGAAC
TCCCTGCCTGGAAGTGCTTGGGATTCGAACACAGTCCATTGCGGTGCAAG
TCTGTGATCGAAACCTTCACACTACCAATCGGCATATCTGCAGTGTGTTT
ATTTATTTCCATCATCAGCCGAAAGCCGGCACAGATTCAACGTTGGTCCG
GAAAACGAATACTATCAACTGTACGTCAGCGATACAGCGAGCTTCGATGT
GACTGTCAACGAGATAAAGAACATACGATGTCGAAAATATCATGACAAAG
GATGGGTTGTATTCCAAAAAAGAGTTGAGCCGGCAAAATTTCCTTTCAAC
AAAAAGTCATGGCAAGAATACAAAGAGGGAGATAAATAACATACGATGTC
GAAAATATCATGACAAAGGATGGGTTGTATTCCAAAAAAGAGTTGAGCCG
GCAAAATTTCCTTTCAACAAAAAGTCATGNAGTATACCATACAAAATGGT
TGATGGCATACTGGAAGACTGCGATTATTCTTTCTCCTCTTGTGACGAAG
TTGTCAACAAAGGTCTGCTGGAGGATAGAATTGAAGCTGTTTTCCCCATC
TTCGTCTCAGGATTTGAGGAAAGTGAGGACGATTTTTGGCTTGGTAACGA
ACTACTTCATCAATGGACAAAACACAAGGAGAATGAGTTGTTGGTTCTTC
TTGAATTCGATGAATATGGCTGGCATGGTAAGAACATTGGATCAGAATTC
AGAACTCCCTGCCTGGAAGTGCTTGGGATTCGAACACAGTCCATTGCGGT
GCAAGTCTGTGATCGAAACCTTCACACTACCAATCGGCATATCTGCAGTG
TGTTTATTTATTTCCATCATCAGCCGAAAGCCGGCACAGATTCAACGTTG
GTCCGGAAAACGAATACTATCAACTGTACGTCAGCGATACAGCGAGCTTC
GATGTGACTGTCAACGAGATAAAGAACATACGATGTCGAAAATATCATGA
CAAAGGATGGGTTGTATTCCAAAAAAGAGTTGAGCCGGCAAAATTTCCTT
TCAACAAAAAGTCATGGCAAGAATACAAAGAGGGAGATAAATAACATACG
ATGTCGAAAATATCATGACAAAGGATGGGTTGTATTCCAAAAAAGAGTTG
AGCCGGCAAAATTTCCTTTCAACAAAAAGTCATGNAGTATACCATACAAA
ATGGTTGATGGCATACTGGAAGACTGCGATTATTCTTTCTCCTCTTGTGA
CGAAGTTGTCAACAAAGGTCTGCTGGAGGATAGAATTGAAGCTGTTTTCC
CCATCTTCGTCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057482-exon-scaffold_289-1575043694:436171..436402 | TCONS_00057482-exon-scaffold_289-1575043694:436171..436402 | Clytia hemisphaerica | exon |
| TCONS_00057482-exon-scaffold_289-1575043694:435465..435590 | TCONS_00057482-exon-scaffold_289-1575043694:435465..435590 | Clytia hemisphaerica | exon |
| TCONS_00057482-exon-scaffold_289-1575043694:434297..434711 | TCONS_00057482-exon-scaffold_289-1575043694:434297..434711 | Clytia hemisphaerica | exon |
| TCONS_00057482-exon-scaffold_289-1510915933:436171..436402 | TCONS_00057482-exon-scaffold_289-1510915933:436171..436402 | Clytia hemisphaerica | exon |
| TCONS_00057482-exon-scaffold_289-1510915933:435465..435590 | TCONS_00057482-exon-scaffold_289-1510915933:435465..435590 | Clytia hemisphaerica | exon |
| TCONS_00057482-exon-scaffold_289-1510915933:434297..434711 | TCONS_00057482-exon-scaffold_289-1510915933:434297..434711 | Clytia hemisphaerica | exon |
| TCONS_00057482-exon-scaffold_289-1491911889:436171..436402 | TCONS_00057482-exon-scaffold_289-1491911889:436171..436402 | Clytia hemisphaerica | exon |
| TCONS_00057482-exon-scaffold_289-1491911889:435465..435590 | TCONS_00057482-exon-scaffold_289-1491911889:435465..435590 | Clytia hemisphaerica | exon |
| TCONS_00057482-exon-scaffold_289-1491911889:434297..434711 | TCONS_00057482-exon-scaffold_289-1491911889:434297..434711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:434297..436402 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
The following BLAST results are available for this feature:
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