TCONS_00057478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057478
Unique NameTCONS_00057478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057478 ID=TCONS_00057478|Name=TCONS_00057478|organism=Clytia hemisphaerica|type=transcript|length=312bp
TCAATCTTAAGTAAAAGATTTCTCGGAAAAAGTCAGCAGGATAACGCTAG
ACAACTAAAAGTAGATTGTGTCGGGGTAGTGTTTGTAACACACTGTGACA
AGTGGTTCGAATGAAATAGAAGTAGAAGCTGTGAAGATAATGCCAGCAAT
ACTACTGAGGagaccaatatggacactgattTTGTACCGCTCATAAGTTC
GTATTTAAAGTCAGAAGAATTCGATCCTTGTTCTTTTCAGCAGCAGTTGA
ATCTTCCAAATGCCGGTGGGTATAATAACAGCACCACCAGTGGTGGTGGC
GGTGGTGGTGNA
Run BLAST on NCBI

transcript from alignment at scaffold_289:301440..305856-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057478 ID=TCONS_00057478|Name=TCONS_00057478|organism=Clytia hemisphaerica|type=transcript|length=4417bp|location=Sequence derived from alignment at scaffold_289:301440..305856- (Clytia hemisphaerica)
TCAATCTTAAGTAAAAGATTTCTCGGAAAAAGTCAGCAGGATAACGCTAG
ACAACTAAAAGTAGATTGTGTCGGGGTAGTGTTTGTAACACACTGTGACA
AGTGGTTCGAATGAAATAGAAGTAGAAGCTGTGTAAGTCGTTATTCTTAA
TATGCGTAAGTCATTTTTCTAGCGGAAACACCCGAAAAAAGCCGGGATTT
GACCTCTCTCTGTTACTAAAAATAGAAACACAGAGGTAAAAAACTGGCTT
TTTTGGGTGCTCCCGTTAAAAAATATGACGTCATCTTGACTTACGAATAT
CAAGAATTGTATTATTGTTAACCGGTTACTTTTTTGAAGCGGGCTATGGC
TTTTTGCGCAATGCAATTAGTTTTTTTGCATGACGACGGGCCTACACTTC
GCAGAGTTGCCCGTTGCTAGAAAAATTCAAATGAAAATGAACCTCTGCGT
TGACATCATTTGCCTCATTTTTTTAAAAACAATTTTTGATCTCTTTTTGC
TTGTTTTTTTCTCGCTTTTTCCTCTATTTTTTCTGGATAAAGCGCGAAAA
ATCAATCGAAGCTGAAGGATATGGTTATCTAATACAATAATGGCCGTTTT
TTCTGGCTGTACTGTGAAATAATTGCTCTCGATCAACGTAACAACTTCAC
AAGCTCGGTTGTTACAATATTTCTCAGTACAGTTCGTCTCGCTCACCGGT
CATTATTGCATTTGAGTATTTTAGTAATAGAAGATGACGGCATCCACCAG
GTCCAGTAGCCTATATATATATTTTACACTTTGCAAAATTTTACAATCGC
ACTTTTGATTAGCAACTCGCACTTTAAAACTTTAACTCGTACTTTTGCAC
GCAGTCAACCTCGTCCCCATCATGTATCCTCAAGGATTTATTTACGTTAC
TACTGATGATGGACGCGCTAGAGAATATATCAGGCGCTTTTACCTTCATG
AAATCTACGATCGATTCTAAGAGCCTTTTAAAAGATTACAATTATGAATC
TTTTTCACTAAAAAATGGCTTTCCCTCAATTTTTCGTGGATGTTATATTG
GCGACGGGTGGGACATGGGCGCAGAGTACTTTTTAACGCTCTATGTTGTA
AAGAGGTCTGGGACCTCAAGGAAATTCCCCGAATTCGGAGGCGCATGCGC
AAAAGCAAAGAAGGAAGTCATAATTAAGCGGGAGAAAATGAAAGTAGATT
ATTCATCATTTTTTTTATCAAGCCAGTGGCAAAGGAATTTCTTTTCATTA
TATATAATTAGTTTTGTATGATTCTTTGTGGCATATAATGGCTCATTAAT
CTCGTCATGATGAAATGCCGTCCTCGCAAAAAAGTGAATGTTTTGTTTTG
TTTCAAAATAAACATTTTACGTGATACGTGATTGAAGACACGATTCGTGA
CCGAATATCGAGAAAGTCAGAGAAATCAAACCTTAAATGTTAAATCAATA
TATAACTTTATAGATTGGTGATTGGATTGGGTCAGTAGATAGATAGACTA
AATTTTATCATTCTTTTTTTTCTGATACAGAGTGAACAGTATACCTACAT
TCGGTAGGGGGGGGGGTACTGGGGTTGTGCTTGAGCTGGCGGTGCAGTGT
GCCACCTGACTCTCAACCCTCTCACCTTGGGATTGCGATATTGGGACTAA
TTTGACCAATTTCTATCTTTCAGGGCAAAAAGTGGAAGTTTTCCTATTTT
TCCGACCTGGGACTGGGTGGTTGAGAAGTTTGATTTTCATCCATCCATAG
ACCTTCTGTCCTGTATATAATTCTGAAATGCCATGTCTAATTCCGCCTCC
GGCATCATAGCAGCTATATGGTCCAAATAAAATAAAACCTTCTGAATATA
AGTTGTTTAAAAAAATCACTCTATTACTTGAGCCACTTTGCAGATCGGAT
AGTTGCTATGTTGGAATTAGACAAGGTATGTCAGCATTACAAAAAGTTAC
CGTACTAACTGGTTATAATTATAATGGATGACATTCGTGCATTCATACTC
GCCCATACTTCTGCCACAGCAAATGTCTTGATGTTTAGGGTGATGTTGAT
AAACCATTAGATGACGGTAGAAAATGGGCTTTATGAGCTTTTCAGCAGAC
ATATTAAGGATGATGTCCAATAACTCATTCTGTCCAGGGAAAATCAACTT
AACGTTACTTTTTATGTTTATCTGTACATGTCTCCATCAACTCGCGATTA
AATATTCACTGAAGTGGAAACCCTCAAACATTGAGCGTGAAGCTCAAGCA
TTTCAACATGTTTCATGCAACTTTTGAACAGTTCGTTGTTGGATTTTTGG
GAAAAGTTTCCCTGATTTTCCTGTTTTTTCCAGAAAATTTTCTGGATTTT
CTGATTTTCAGAGAAAATTTTTCCCCTGCTTTTCCAATTTTGGGAAAAGG
TTTCACGGATCTGCTGATATTTTCTACCAAAGGTCCTGGGGAGTTGAAAA
ATGAGCTTTCAGAAAGTTAAGTTGACCTAAGTCAACAGAAGATTCTTTTA
AATAAACTATTAACCAGCATCTTTTTATTTTCAAATAATATATAAAGAGC
AGTTTAAAATTCTGGGAAGAAGTCTTGCTTATGCTATATATAAATTGAAA
TTTCAATTAGATTTTTTATGTTACTTAAATTTCAACAGAAAGAAAAGGAT
GCAGAGAAGGGACCTGAGATTGTTTCCATAATTAATTGTGACATTTTAAA
AATGAAGCGTAAACCCAGTTTTCTTTTCAAAAGTACAAGTATATACCTAC
TCTGCAACATGTCTGAAAAGGAAAAATAGTTTGCTGGCTAAAAAAATAAA
TTTTTGTGGAACAAGTTTTTGCAGAATTTCATTTCACGGTTTTTTGAAAA
ATCAGCAAAATTAAATTCCGTGAAACACAAATATTGTCAGGATTTCAAAA
ATCACCCCTAAAATTTGTCTTTTCAGCAAAAAATAGGATTAAAAATTAAA
AATTCCGCAAAACTTCTGAATTTAGATTTTTGGTTATTCACAAATTTAAA
GCTCATAAATTACAATAGAGGTGTGATTCTTCACACAAAAATTTCTTCCC
TTAACTCTTCGATCATCTTGTGCAGGGAAACAAATTTTTAACTAACTTTT
TAACTTTTGAAACATTTATCCAATTGACTTGAAATTTAGCAAGTGTGTAC
CAAATATGAAATGGCATCTTTGATGAAAATTTTGGCATATCATTGATGAC
GTCATCATTTTTTGAAAATAATTAAAATCGGAACCCCATTTAACCTAGTA
ACTTGAATTTTTTTCGCTCAAATTTTTTGAGGCAACTCCAGGTGACATAA
ATTTTTTTTTAATTGCAAAATTTCGCATTTTAATTATTTCTGCTGACATC
AGCAAAATTAAAAAAAAAATTTATGCAGAAATGTTTCTATTAAAGATATG
CAGATTTGGATTTCATATTTATACCATCAGCCAAACTTGAGTTATTAAAA
AAACAAGTTTTGCTGACGTCATCATTTTTTGGTTTTTGCCTAATAACTTT
TTTGGGTGAAAAAATTAATTTTATTAACAGTGATTTCTGAATTCTACATC
GTAATACGCTTCTTTAAAGGTATAAATGAATATGTCTAAGGCCCCCAATT
TTCTGCGCCAAACTTATGGCTTTTGGGACATGCCATAAGTTACCAGAGGT
GTAATTTACAGACTGGTCTGCAAAGTATCAAATACTCATGGGAACGAATT
TTTTCTGTTACTAGTCTCTTTTATTTGACAAAACAGCCTTCAGGAACAGA
TTTCAGTCAAATTGAACAAGTCAATTAAATGATTTTGGTCAAGTTTTGCA
AATCAACTTCAGTTATCCATATCTACTGGTCAAAATTTCAAGGTCATAGC
AGTTGTCAATCTTGAGATTTTAAGGGGGAGCTCGAGCCCCCCCCCAAAAA
TGCTTTCCCTCCAATTAAAAAAATAGGAAGATGCTTGAAGGGTTAAGGTA
TCCCTCAAATACCTCAAATGCTTGCACACATTTTGTTACTTTTTTTCCGA
AACCTAAACTTCCATAAAAATTTGATTCAAAACTTACTCAAAAACATTTT
TAGGGAAATGGTGTGACGCTTATTGATTATCTTACCAAGCAACACCCAAT
AATAAAGTTTTATTGAATCTCAACAAATTTTTGGATGTTTACATTTTTAA
TTTTAACTTTAGCACGATAAAATGATACTGAAGGACACTACTGGCTGCTG
AGTCATGAAATATTTGCATTTGTGATTAATTCTTTAGGAAGATAATGCCA
GCAATACTACTGAGGAGACCAATATGGACACTGATTTTGTACCGCTCATA
AGTTCGTATTTAAAGTCAGAAGAATTCGATCCTTGTTCTTTTCAGCAGCA
GTTGAATCTTCCAAATGCCGGTGGGTATAATAACAGCACCACCAGTGGTG
GTGGCGGTGGTGGTGNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036221XLOC_036221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057478-exon-scaffold_289-1575043694:305725..305856TCONS_00057478-exon-scaffold_289-1575043694:305725..305856Clytia hemisphaericaexon
TCONS_00057478-exon-scaffold_289-1575043694:301440..301619TCONS_00057478-exon-scaffold_289-1575043694:301440..301619Clytia hemisphaericaexon
TCONS_00057478-exon-scaffold_289-1510915933:305725..305856TCONS_00057478-exon-scaffold_289-1510915933:305725..305856Clytia hemisphaericaexon
TCONS_00057478-exon-scaffold_289-1510915933:301440..301619TCONS_00057478-exon-scaffold_289-1510915933:301440..301619Clytia hemisphaericaexon
TCONS_00057478-exon-scaffold_289-1491911889:305725..305856TCONS_00057478-exon-scaffold_289-1491911889:305725..305856Clytia hemisphaericaexon
TCONS_00057478-exon-scaffold_289-1491911889:301440..301619TCONS_00057478-exon-scaffold_289-1491911889:301440..301619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:301440..305856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344327	0.671547	3.11892	0.381422	20.8848	14.3103	13.7233	22.7941	9.18835	23.2244	15.9188	7.66673	9.80128	9.10902	5.16856	6.01763	2.84334	2.91433	6.70853	5.3623	2.33041	3.41007	5.13239	5.02501	12.8729	21.6991	38.2434	27.2096	19.8732	14.407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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