TCONS_00057477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057477
Unique NameTCONS_00057477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057477 ID=TCONS_00057477|Name=TCONS_00057477|organism=Clytia hemisphaerica|type=transcript|length=808bp
aaatgAATATGTCTAAGGCCCCCAATTTTCTGCGCCAAACTTATGGCTTT
TGGGACNCGGTGGGTATAATAACAGCACCGCCAGTGGTGGTGGCGGTGGT
GGTGGCGGCAGTGGTGTAATAAACCAAGATCAATTTGTTGGATATAACAA
TTATGCTAGTGAAAGTCCAGAGTATCCTTACAATAACTCACCTTATAATA
ACAAAAATGGGGCAATTGAAATGCAATCTGGTCATTTGTCCCCTCGAACC
CATGgaataataaataattttccAGTTGAACTCGAATATATTCGTTTTCC
AGAAAAGTTATTTAAGACACAGaaaagaatCAGAGGAAAATCTGAACAAA
GAATCCAGAAAAGCATTTTGGAATTTGCTCTGGACTTTCTGGATCCTGTC
ACATTAAACCTGGTTGTCGTCCATAGTATACAAGTTTACATAAAACGAtc
taaagaattgaaaaatacaCCAAAATATGTTGGAGCTATCCAATTACAAC
CTAAATCTATAACTCCTGTTGATGGAACATTTAAATATCTCATCAAAGTG
GATTTAGACTCTGTCTATGAAGTTGATGGCAAGAAAGTATATCAATTACA
AAAGACAGCAACCGAAGAACTGAATCTGTTTCATTTGGTGATACAAATAT
GTCTTGCCGATGGTCGTTCAACATGCTTGCAAACTAAAGAGTTATTATTG
GTCGGCAAAAAAACAGCTGCTGCAGAAGCGTCATGTTTTGTTCCTTCTCC
ACCAACCGGTCTTGCTGCTTTGGAGCAAAGAAGAGACAGCTTTAGCTCAG
GTATGTNG
Run BLAST on NCBI

protein sequence of TCONS_00057477-protein

>TCONS_00057477-protein ID=TCONS_00057477-protein|Name=TCONS_00057477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MQSGHLSPRTHGIINNFPVELEYIRFPEKLFKTQKRIRGKSEQRIQKSIL
EFALDFLDPVTLNLVVVHSIQVYIKRSKELKNTPKYVGAIQLQPKSITPV
DGTFKYLIKVDLDSVYEVDGKKVYQLQKTATEELNLFHLVIQICLADGRS
TCLQTKELLLVGKKTAAAEASCFVPSPPTGLAALEQRRDSFSSGMX
Run BLAST on NCBI

transcript from alignment at scaffold_289:296415..301089-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057477 ID=TCONS_00057477|Name=TCONS_00057477|organism=Clytia hemisphaerica|type=transcript|length=4675bp|location=Sequence derived from alignment at scaffold_289:296415..301089- (Clytia hemisphaerica)
AAATGAATATGTCTAAGGCCCCCAATTTTCTGCGCCAAACTTATGGCTTT
TGGGACNCGGTGGGTATAATAACAGCACCGCCAGTGGTGGTGGCGGTGGT
GGTGGCGGCAGTGGTGTAATAAACCAAGATCAATTTGTTGGATATAACAG
TAAGATGTTTTACTTTACTTTTATAAGAAAATATTTTCAAGCACCGCTAT
GCTGTGATCTGATGTGATTGATATACAGGCCCGGTGGAAGCTGGGAGACT
GGGGAGACTTCANTGCTGTGATCTGATGTGATTGATATACAGGCCCAGTG
GAAGCTTGGAGACTGGGGAGACTTCATCCACCCCACTTTTGAGTTGTGAT
GTGATGTGAGTGATATCTGAGCTATTACTGCTAAAACTAAATTTGTTTTT
TGAAACTCTTACCTTTTTTGGAGTCTTCGATACAAAGTGGTCTCTTTTAA
AGGTTTATCTTTAACAATGGGTGATTTAGGTTTGGTAGCCCTATGCTTCA
TTAAAAATATATTTGAAATAATTCGAACGTAGTCATTGTTATTTGCAATG
TTAAAACAGACTGAGATAAAACATTTAAATTTTTCGAAAAGTGGTTCTTT
GAGGCTAGCTGTTCTAATATGCTGTTCTGTTTTTATATTTTGATATGTTT
AGCCAAAAGTATCCTTCTTACTCACTTTGAAAAGTTACTAATGTTTTTCA
AAACCGAAGGAAACAACTTTTAGAGTGCAGCCATGTTAAAAGTCTATTTG
CTGTATTTTTTCCATCCGATATAGATTCTCAACTCAATGTGGAAGACGTG
TAGCAACACATCTTCGCTAACCTTAAGCTTCTTTGCATACTCTGTCTAAT
TGACACTCATATATATATGCAAAAAAATTGGTTCCAATATTGACTTGCCA
AACTCTAGGTCGAGTTGAATAGAACGAATTTCTTAAAGTTTTGTCTTGTT
TTTACATAAGTGTTCCCGTTTCATATCAGACACATCAACGGATTAGAATA
GGTGGATTAAGAACTCATAGAAAACACTCCTCGTTAGGTTATCAAACTTT
TTTACGAGTTTGCTAGCAATTAAAACTTGATAAGTTGTAANGACACATAT
TTGTGTGTGCCTATTGTTATGCTGATGAACAAAAAATGTTTTTCTTTTCC
TTTTTTTGACCAATCTTGCTCCACATCCGTGTGAAAGAATTTGTGAATTT
TAAGATTGATGAGTAAGCAAACGATACCTCTCCCTTATTTAAAAACAAAA
CCTTTAACAGACTCAATATGACAGGGCATTATCTTATGCTCTTACAAAAA
AGTTGCAGAATGGCTTGTATTATTTTCAAATAAATATTTTCATCTTCTTT
TTATCAGATTATGCTAGTGAAAGTCCAGAGTATCCTTACAATAACTCACC
TTATAATAACAAAAATGGGGCAATTGAAATGCAATCTGGTCATTTGTCCC
CTCGAACCCATGGAATAATAAATAATTTTCCAGTTGAACTCGAATATATT
CGTTTTCCAGAAAAGTTATTTAAGACACAGGTATGTACAAGACTTTTATT
TTACCACATTTTATTTGAATTTGACTTTGTCTTAAATTAAACGTGACAAG
AATAGTTTAAGATTCACTACGATTGGGTATTTAGCTGAGTTGGACAAGGT
TGCTGGTTCAATTTTTACTTGGGATTTTACCAATGATTTGAAAGTAGCCT
CTTTACTATGATAAAGCCGATAAAGGGTTATAAAGATAATGTTGAATAAT
CCAGGGAGAAAGAGTAGTGAAATCTTATGTTTTTTTTTAATGCAAGCTTC
TGCCTCTTGGTCAGGCTCGTGTATGCTTAAGTTCTCAGAGCATCCAGGCA
TAGCCTATGCTTATCATATGCTTATGAATCATGCTTATGATTCACCCCGA
GCCAAGATTTGTAAAAATTTGCTCAGATATTTTGGAGCAGTGGAATCTAG
CTAGCCGTGTAATGTCAATTTTTTGCTTGACCTCTAACAAACCTTTTTAA
ACAAATAAAAAATGACTTGAAAAATATTTCAGGCTGACATATTTATGCTA
TGTTATGCTTAGGAATTCTGCAAATCGGAGCCTTCATATGCTTGTAAGTG
TTATGCTCATAAAGCATGTATTCACTGATTAATAGCATTCATTCACTTCC
ATTTTTTTTTCTTTTTCATAGAAAAGAATCAGAGGAAAATCTGAACAAAG
AATCCAGAAAAGCATTTTGGAATTTGCTCTGGACTTTCTGGATCCTGTCA
CATTAAACCTGGTTGTCGTCCATAGTATACAAGTTTACATAAAACGATCT
AAAGAATTGAAAAATACACCAAAATATGTTGGAGCTATCCAATTACAACC
TAAATCTATAACTCCTGTTGATGGAACATTTAAAGTACGTTTACTTTTCA
TTTAATTTGGTATTAGGATTGTTGGATTAAGGCTTGGGGAGAATTTTTTT
TCGTGTTGGTGCAATGCAACATGCTCCATCCCTCCAACACAAGAAAAAAA
AGTGTGCGTGTCTCATGATTTCTTTGATTGTTTCATGGGACAAAAAGTGA
GGGAAATACCCAAAAGACACGCGCTGATTTTGTCCCTGGGACAAAAGTGA
AAGACGCACAAATGTTATTAAAAGTGTTGTCGATTTCACTTTTAAAGAAA
AATGGGGTGGGCACATACGAGAAACTTCTCGTGTCCCCAAGCCTTTAGTC
TTTGAACATTTTNTTTTTCTTATTTAAAGAAAAATGGGGTGGGCACATAC
GAGAAACTTCTCGTGTCCCCAAGCCTTTAGTCTTTGAACATAAGAATAAT
TTAAGAACAATACTAAACTTGAATATTAAGCACACCTAAAGGACCACATC
CCCTTTGATAGGTTTTTATATAAGGGGTGCGTATCATGTATCAAATTCCT
GTCCGAGAGTTACCCCAAATTGAATTGAAAGAAAGAAAGAATTTTTTTTC
GCCTGCATTAAGGAAAGGATACAGAAACATAGAATATGGGAATAAAATAA
ATAAGGCCAGGAAATTACCATCCAATAGATGCAAGCATCTAACCTATGTG
ATGTCAACCTGCTGGACTGATGAATATTAAGATGTTAAAATTGATAAAGT
ATGGAAATACCTAATCATAAATATGTATAAACAGTTTTAAAAACTTTTAA
AAACTAAATTCGGGGTAGCCTATTTCAATTTTCTGCTTAAAAAAGTTTAG
AAATTCAATGATTGTATTAACCTCCTGCCATTCAAAAATTTTATGACATT
TAAAGATCTCTCATAAAAAAACTCTACTGATCAAGCTAATCAAGTTTTTA
AAACTCAAAAACACAAAGACGGGGGTAACTCTCGGACGGGAATTTTTTTG
GACATCCCCTATTTCAAAACATATCAGAGGGGATGCGTGCAGCCTACTAC
AGTAATAGGAACAGCCAGAATATTCTTGACATTCTTAGCTTTTTTGGTCT
AAATAATAAAAAAAAATCGCTTCCTGGTGTTCATTCTTGTCTAAATCGTA
ATGCATTTGACAGAATTTCCAACTTCACATGGCTATTTCTCTTTGTGTAT
TTAAGTACAAGACTTGTAGTATACTTTTTAAGCTCAAAATTTCATCCTCC
ATTCGATGATAATAACCATTTTTATAGTATGTTCTTTATAAAAAATCTAT
ACAGGGGTGGTGGACGAACCTTTGCAAGTCAAAACAAATTTTTGGACGAA
CTAAAATCAGTCATACACCCCCTGGAAATTTTAGAATAACTTTCTATTTC
CTGGAAAAATGAAAAAAGAACTTCTTATTTAGACTCCCTGGAAATTCTTT
TCGGGCTATCCCCTGAGAATTTCGTCCACCCCCCCTGCGTTGATGTAAAA
TAGAATGGCCCATTGAATTCGACTTTGAAAGCCTGAACTAGTCTTGAACT
AGGTAACCACATGCGTTTGCATCGTAACAAAGATGCTACGCATTCTAAAG
GTTGGCTTATAAATAGTATTAAAGCAAATTTTAACTATTTGTTGTTTTTC
TTCTAGTATCTCATCAAAGTGGATTTAGACTCTGTCTATGAAGTTGATGG
CAAGAAAGTATATCAATTACAAAAGACAGCAACCGAAGAACTGAATCTGT
TTCATTTGGTGATACAAATATGTCTTGCCGATGGTCGTTCAACATGCTTG
CAAACTAAAGAGTTATTATTGGTCGGCAAAAAAACAGCTGCTGCAGGTTT
GTCTATTAGAAAACGAAATCAAAATTGATAAAAACATCCCTGCAAGTTTC
TTATAATGTTCTTCCCTGCCCAATGATCTTCATACCCTGGACATTTCTCG
ATGTCGTATGTCGATCTGAGCCAAGCAGAATCTTTGACTGGAGATTTTTC
AGGAGAGAGAGTGTTTACTCTAACGTGATGTGTGGGTGAAAAAATATTTT
TCAAATGTTTCCTTAATTCGAACCAAAAAATTGATCCGCTGAGTTGGACT
GTAAAGTAAGAATACGCTCTGTAATTCGAATCTATCTGTAATTCGAGAAT
AATTCCTGACCCCTTGAAGATCGAAATAGAGAAGATCAACTTTAGTTTTT
TTTCCTTTACTTTTTTGTTTTTATTATTGACTTTTTTTATAGAAGCGTCA
TGTTTTGTTCCTTCTCCACCAACCGGTCTTGCTGCTTTGGAGCAAAGAAG
AGACAGCTTTAGCTCAGGTATGTNG

Coding sequence (CDS) from alignment at scaffold_289:296415..301089-

>TCONS_00057477 ID=TCONS_00057477|Name=TCONS_00057477|organism=Clytia hemisphaerica|type=CDS|length=2352bp|location=Sequence derived from alignment at scaffold_289:296415..301089- (Clytia hemisphaerica)
AAGCGTCATGTTTTGTTCCTTCTCCACCAACCGGTCTTGCTGCTTTGGAG
CAAAGAAGAGACAGCTTTAGCTCAGGTATGTNGTATCTCATCAAAGTGGA
TTTAGACTCTGTCTATGAAGTTGATGGCAAGAAAGTATATCAATTACAAA
AGACAGCAACCGAAGAACTGAATCTGTTTCATTTGGTGATACAAATATGT
CTTGCCGATGGTCGTTCAACATGCTTGCAAACTAAAGAGTTATTATTGGT
CGGCAAAAAAACAGCTGCTGCAGAAAAGAATCAGAGGAAAATCTGAACAA
AGAATCCAGAAAAGCATTTTGGAATTTGCTCTGGACTTTCTGGATCCTGT
CACATTAAACCTGGTTGTCGTCCATAGTATACAAGTTTACATAAAACGAT
CTAAAGAATTGAAAAATACACCAAAATATGTTGGAGCTATCCAATTACAA
CCTAAATCTATAACTCCTGTTGATGGAACATTTAAAATGCAATCTGGTCA
TTTGTCCCCTCGAACCCATGGAATAATAAATAATTTTCCAGTTGAACTCG
AATATATTCGTTTTCCAGAAAAGTTATTTAAGACACAGAAGCGTCATGTT
TTGTTCCTTCTCCACCAACCGGTCTTGCTGCTTTGGAGCAAAGAAGAGAC
AGCTTTAGCTCAGGTATGTNGTATCTCATCAAAGTGGATTTAGACTCTGT
CTATGAAGTTGATGGCAAGAAAGTATATCAATTACAAAAGACAGCAACCG
AAGAACTGAATCTGTTTCATTTGGTGATACAAATATGTCTTGCCGATGGT
CGTTCAACATGCTTGCAAACTAAAGAGTTATTATTGGTCGGCAAAAAAAC
AGCTGCTGCAGAAAAGAATCAGAGGAAAATCTGAACAAAGAATCCAGAAA
AGCATTTTGGAATTTGCTCTGGACTTTCTGGATCCTGTCACATTAAACCT
GGTTGTCGTCCATAGTATACAAGTTTACATAAAACGATCTAAAGAATTGA
AAAATACACCAAAATATGTTGGAGCTATCCAATTACAACCTAAATCTATA
ACTCCTGTTGATGGAACATTTAAAATGCAATCTGGTCATTTGTCCCCTCG
AACCCATGGAATAATAAATAATTTTCCAGTTGAACTCGAATATATTCGTT
TTCCAGAAAAGTTATTTAAGACACAGAAGCGTCATGTTTTGTTCCTTCTC
CACCAACCGGTCTTGCTGCTTTGGAGCAAAGAAGAGACAGCTTTAGCTCA
GGTATGTNGTATCTCATCAAAGTGGATTTAGACTCTGTCTATGAAGTTGA
TGGCAAGAAAGTATATCAATTACAAAAGACAGCAACCGAAGAACTGAATC
TGTTTCATTTGGTGATACAAATATGTCTTGCCGATGGTCGTTCAACATGC
TTGCAAACTAAAGAGTTATTATTGGTCGGCAAAAAAACAGCTGCTGCAGA
AAAGAATCAGAGGAAAATCTGAACAAAGAATCCAGAAAAGCATTTTGGAA
TTTGCTCTGGACTTTCTGGATCCTGTCACATTAAACCTGGTTGTCGTCCA
TAGTATACAAGTTTACATAAAACGATCTAAAGAATTGAAAAATACACCAA
AATATGTTGGAGCTATCCAATTACAACCTAAATCTATAACTCCTGTTGAT
GGAACATTTAAAATGCAATCTGGTCATTTGTCCCCTCGAACCCATGGAAT
AATAAATAATTTTCCAGTTGAACTCGAATATATTCGTTTTCCAGAAAAGT
TATTTAAGACACAGAAGCGTCATGTTTTGTTCCTTCTCCACCAACCGGTC
TTGCTGCTTTGGAGCAAAGAAGAGACAGCTTTAGCTCAGGTATGTNGTAT
CTCATCAAAGTGGATTTAGACTCTGTCTATGAAGTTGATGGCAAGAAAGT
ATATCAATTACAAAAGACAGCAACCGAAGAACTGAATCTGTTTCATTTGG
TGATACAAATATGTCTTGCCGATGGTCGTTCAACATGCTTGCAAACTAAA
GAGTTATTATTGGTCGGCAAAAAAACAGCTGCTGCAGAAAAGAATCAGAG
GAAAATCTGAACAAAGAATCCAGAAAAGCATTTTGGAATTTGCTCTGGAC
TTTCTGGATCCTGTCACATTAAACCTGGTTGTCGTCCATAGTATACAAGT
TTACATAAAACGATCTAAAGAATTGAAAAATACACCAAAATATGTTGGAG
CTATCCAATTACAACCTAAATCTATAACTCCTGTTGATGGAACATTTAAA
ATGCAATCTGGTCATTTGTCCCCTCGAACCCATGGAATAATAAATAATTT
TCCAGTTGAACTCGAATATATTCGTTTTCCAGAAAAGTTATTTAAGACAC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036220XLOC_036220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057477-exon-scaffold_289-1575043694:300941..301089TCONS_00057477-exon-scaffold_289-1575043694:300941..301089Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1575043694:299560..299732TCONS_00057477-exon-scaffold_289-1575043694:299560..299732Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1575043694:298706..298918TCONS_00057477-exon-scaffold_289-1575043694:298706..298918Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1575043694:296894..297083TCONS_00057477-exon-scaffold_289-1575043694:296894..297083Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1575043694:296415..296497TCONS_00057477-exon-scaffold_289-1575043694:296415..296497Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1510915933:300941..301089TCONS_00057477-exon-scaffold_289-1510915933:300941..301089Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1510915933:299560..299732TCONS_00057477-exon-scaffold_289-1510915933:299560..299732Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1510915933:298706..298918TCONS_00057477-exon-scaffold_289-1510915933:298706..298918Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1510915933:296894..297083TCONS_00057477-exon-scaffold_289-1510915933:296894..297083Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1510915933:296415..296497TCONS_00057477-exon-scaffold_289-1510915933:296415..296497Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1491911889:300941..301089TCONS_00057477-exon-scaffold_289-1491911889:300941..301089Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1491911889:299560..299732TCONS_00057477-exon-scaffold_289-1491911889:299560..299732Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1491911889:298706..298918TCONS_00057477-exon-scaffold_289-1491911889:298706..298918Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1491911889:296894..297083TCONS_00057477-exon-scaffold_289-1491911889:296894..297083Clytia hemisphaericaexon
TCONS_00057477-exon-scaffold_289-1491911889:296415..296497TCONS_00057477-exon-scaffold_289-1491911889:296415..296497Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057477-proteinTCONS_00057477-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:296415..301089 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.78373	3.29214	4.56017	2.8868	51.9172	32.3787	54.6738	62.7336	43.2225	75.6086	55.3857	37.3156	39.3909	33.4217	28.1162	27.3939	10.4487	13.9452	25.4362	33.6009	9.04791	8.79858	11.6805	14.0767	26.7717	29.2847	140.743	124.29	56.2067	50.0991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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