TCONS_00057456 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057456
Unique Name	TCONS_00057456
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2466

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_289:45016..47481+

transcript sequence

>TCONS_00057456 ID=TCONS_00057456|Name=TCONS_00057456|organism=Clytia hemisphaerica|type=transcript|length=2466bp
ctaggcttaaaactcaaaaagtttttaagaacatcccccgaacatccaaa
ggcttcaaaaattttggatgttcttataaaaatacgtgTCGAAATCTTGA
AGCTTTTTAATGCCATTTCTTGGTCAGTGGAATTTTTTGCCACATTTCGa
aattttatacaaattaaCAATCTTATTATTTTCGTTTTAGCATTAAATTT
ACAAATTCAATAGagtaaataaaaataatcaataatTACACACATAGTTG
GCATCGAAACCCAGATATTCATTATCTGTCTCTTGTTCTTCGGATCTGTT
GCTCGCGGTTGAATAGCAGCACAAATACTTTGTTGATAGGTAAGTTTGAA
TATTCGAATTTCGCACTTTCAATTACATTTATttaaaataatgttttaca
TCATAAATTTAAGATATTGTCTCTGGCTAGAGTCAATACTTTGCACAAAT
AGCCCAGTAATCCATCAACTTTTTTGACAGTCTTTAGATTGTTTTTAAAG
GTCCACGGGTCCGGCGGCTCGGCTAGCTGAAAGAAACATGTGAAGTAGTG
GGGATTCAAACAGGAACCCCTATTGTATCGATATGGCCTGGTACTTTATC
AGTCATcgcttctttatttaattttcataattttaaccTTGACCCAAAAT
TTAAATACTACTCTCTCCTTCAAAGAGACTTGGCTTGTGTGACTTGTTAG
TTTTACTGAATCTCTAGTGTGCACCAATTTAGAATAAGATTCTCGAGTCT
GTTCATACAAAATTTTGTACGCTATTTGGCATCATTTTCTATATGAAATG
TGTGGCCAATTCATCGAGGACCAATTTGGAGTActgctttaattttttta
aactcttGGTTTAGGTCGCCCTTCAATCaatcttttattatatttttctt
tagcttCTTTCATCTGGCCCTCAATAATCCCTTTAAACTGTTTCTCCAAC
ATTTGCACACTCTGAAACTCTGCCGAATCTTCAAATCTGGTCTGGCGATT
ATCTCCAACAGAATGTTCAACTCCATGATTCCGATTCTTCTTTACAAGTC
GTGATAGCTCACTGACCAAACCAACCAATATTACGATCGCAGCACAAATG
AACAGCGTTGCAGATACTACATCCGGCTCTGTAAACATTGCTCCCAATTT
TCGAGAATAATATGGGTACACGTTATACGAGGGAgtaaatttacttttta
ttcCTTGGATAATAAAATCGTCGAAGTTACCAAGTGCAAATTTTGCCAAT
AAGGTAGTAAGTCGCTGGTTAGGTTTTCCGGTTTGAGCCAGATAAATGAA
AATCGGTGTTTCTATGTCATATTCGGATTCGATTTTCAAGTCAGCGTAAT
TTGGATTATTTTTCAGATGGTATGCGGCAACTTCTACATCCACTAATGCT
CCCTTTGTAGCTTCATCAGACCTTACCATTTCAAGTGCATCTATATGTGA
TTCAACAGGTTTTGGAATCCCGTTAACCTTATTTGGTAAGACGTACATCG
CCATACTGTTTTCCAAAACAGCTATTTGTTTGTCTTCTTTTGATAGTCCT
TTTGACATGGCTTCGACTATAGTGGCTGTAATAAAAGCAGTCATCATCAT
GCCACAAATCATCCAGGCTAAACAGATCAGACGACTTAAAAAGTGTCTCG
GCGCTTTATCACCGTAACCAACCGTCGTCATAGTTACCAAGCAAAACCAA
ATAGCGCTCCATATTCCAGGTCCAACTTCTGCATCGAACTCTTCATTCGA
TCTGTGCTCGATTATCCAAATCAAAAAAGCAACATTGATACTGCATACAA
TCGCAATCAATAAAGTACTGAGACAATTCTCAAGACCATCTACAAAACGT
AAAACAACGTATAAGTCTTGTATGGGGACAACTAGCGCCTGTTTTTCACT
GTTCAAGAAACTCGTTCGTGTGAAAAACGGATTAAACCTTTCTCCTAATT
TGGTCGTAGAACCGATAATGTAAACATCCGACGTCTCATTTTGTGACGTG
ACGCCTAAGCCAGCCAATATATCGGCAGTAGATTGTTCTATATTGATAAA
CCTAAACAATTCCGTCTCATTTTGGAACTGTTTTTGATGCTTTgtgaaat
tgaattgaaatcctTGCCCCGGTAGAAAACGGTTAATTTCTTCAAACATG
AGTGACGTAACCTTCGGGATAATCCCGTACGTCGTGATTCGTTCGCCTTT
AGGATTGTCTTCCGGTAACACCGGAATTTCGAAATGATAAGGAGGGCTAC
TCCAACTTAAGAAATATACGCTGATGTTTTCTTTCGCAATAACGGATAGT
GTGCATTGTCCTGTAATCCAGTTTTCCATCAAGGTGAAAAGCCACAGGAG
CAGCATGATTGTACCTTGTAAAGTTGAACGAAGACTTCGATCCTCCCTTT
TCGTAGGTCTATGTTATTCCTCGTTccttttttcaaagatcttCAATTTc
tctgtttatttttttc

Run BLAST on NCBI

transcript from alignment at scaffold_289:45016..47481+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057456 ID=TCONS_00057456|Name=TCONS_00057456|organism=Clytia hemisphaerica|type=transcript|length=2466bp|location=Sequence derived from alignment at scaffold_289:45016..47481+ (Clytia hemisphaerica)
ctaggcttaaaactcaaaaagtttttaagaacatcccccgaacatccaaa
ggcttcaaaaattttggatgttcttataaaaatacgtgTCGAAATCTTGA
AGCTTTTTAATGCCATTTCTTGGTCAGTGGAATTTTTTGCCACATTTCGa
aattttatacaaattaaCAATCTTATTATTTTCGTTTTAGCATTAAATTT
ACAAATTCAATAGagtaaataaaaataatcaataatTACACACATAGTTG
GCATCGAAACCCAGATATTCATTATCTGTCTCTTGTTCTTCGGATCTGTT
GCTCGCGGTTGAATAGCAGCACAAATACTTTGTTGATAGGTAAGTTTGAA
TATTCGAATTTCGCACTTTCAATTACATTTATttaaaataatgttttaca
TCATAAATTTAAGATATTGTCTCTGGCTAGAGTCAATACTTTGCACAAAT
AGCCCAGTAATCCATCAACTTTTTTGACAGTCTTTAGATTGTTTTTAAAG
GTCCACGGGTCCGGCGGCTCGGCTAGCTGAAAGAAACATGTGAAGTAGTG
GGGATTCAAACAGGAACCCCTATTGTATCGATATGGCCTGGTACTTTATC
AGTCATcgcttctttatttaattttcataattttaaccTTGACCCAAAAT
TTAAATACTACTCTCTCCTTCAAAGAGACTTGGCTTGTGTGACTTGTTAG
TTTTACTGAATCTCTAGTGTGCACCAATTTAGAATAAGATTCTCGAGTCT
GTTCATACAAAATTTTGTACGCTATTTGGCATCATTTTCTATATGAAATG
TGTGGCCAATTCATCGAGGACCAATTTGGAGTActgctttaattttttta
aactcttGGTTTAGGTCGCCCTTCAATCaatcttttattatatttttctt
tagcttCTTTCATCTGGCCCTCAATAATCCCTTTAAACTGTTTCTCCAAC
ATTTGCACACTCTGAAACTCTGCCGAATCTTCAAATCTGGTCTGGCGATT
ATCTCCAACAGAATGTTCAACTCCATGATTCCGATTCTTCTTTACAAGTC
GTGATAGCTCACTGACCAAACCAACCAATATTACGATCGCAGCACAAATG
AACAGCGTTGCAGATACTACATCCGGCTCTGTAAACATTGCTCCCAATTT
TCGAGAATAATATGGGTACACGTTATACGAGGGAgtaaatttacttttta
ttcCTTGGATAATAAAATCGTCGAAGTTACCAAGTGCAAATTTTGCCAAT
AAGGTAGTAAGTCGCTGGTTAGGTTTTCCGGTTTGAGCCAGATAAATGAA
AATCGGTGTTTCTATGTCATATTCGGATTCGATTTTCAAGTCAGCGTAAT
TTGGATTATTTTTCAGATGGTATGCGGCAACTTCTACATCCACTAATGCT
CCCTTTGTAGCTTCATCAGACCTTACCATTTCAAGTGCATCTATATGTGA
TTCAACAGGTTTTGGAATCCCGTTAACCTTATTTGGTAAGACGTACATCG
CCATACTGTTTTCCAAAACAGCTATTTGTTTGTCTTCTTTTGATAGTCCT
TTTGACATGGCTTCGACTATAGTGGCTGTAATAAAAGCAGTCATCATCAT
GCCACAAATCATCCAGGCTAAACAGATCAGACGACTTAAAAAGTGTCTCG
GCGCTTTATCACCGTAACCAACCGTCGTCATAGTTACCAAGCAAAACCAA
ATAGCGCTCCATATTCCAGGTCCAACTTCTGCATCGAACTCTTCATTCGA
TCTGTGCTCGATTATCCAAATCAAAAAAGCAACATTGATACTGCATACAA
TCGCAATCAATAAAGTACTGAGACAATTCTCAAGACCATCTACAAAACGT
AAAACAACGTATAAGTCTTGTATGGGGACAACTAGCGCCTGTTTTTCACT
GTTCAAGAAACTCGTTCGTGTGAAAAACGGATTAAACCTTTCTCCTAATT
TGGTCGTAGAACCGATAATGTAAACATCCGACGTCTCATTTTGTGACGTG
ACGCCTAAGCCAGCCAATATATCGGCAGTAGATTGTTCTATATTGATAAA
CCTAAACAATTCCGTCTCATTTTGGAACTGTTTTTGATGCTTTgtgaaat
tgaattgaaatcctTGCCCCGGTAGAAAACGGTTAATTTCTTCAAACATG
AGTGACGTAACCTTCGGGATAATCCCGTACGTCGTGATTCGTTCGCCTTT
AGGATTGTCTTCCGGTAACACCGGAATTTCGAAATGATAAGGAGGGCTAC
TCCAACTTAAGAAATATACGCTGATGTTTTCTTTCGCAATAACGGATAGT
GTGCATTGTCCTGTAATCCAGTTTTCCATCAAGGTGAAAAGCCACAGGAG
CAGCATGATTGTACCTTGTAAAGTTGAACGAAGACTTCGATCCTCCCTTT
TCGTAGGTCTATGTTATTCCTCGTTccttttttcaaagatcttCAATTTc
tctgtttatttttttc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036209	XLOC_036209	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00057456-exon-scaffold_289-1491911889:45016..47481	TCONS_00057456-exon-scaffold_289-1491911889:45016..47481	Clytia hemisphaerica	exon
TCONS_00057456-exon-scaffold_289-1510915933:45016..47481	TCONS_00057456-exon-scaffold_289-1510915933:45016..47481	Clytia hemisphaerica	exon
TCONS_00057456-exon-scaffold_289-1575043694:45016..47481	TCONS_00057456-exon-scaffold_289-1575043694:45016..47481	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_289	supercontig	scaffold_289:45016..47481 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175533	0.090414	0.306286	0.35319	0.112259	0.0922735	0.711499	0.283232	0.79805	0.572523	0.387084	0.687522	3.10198	2.34126	0.293513	0.204283	0.146049	0.245458	4.1222	4.37116	0.926176	1.03038	0.379609	0.735272	1.52565	1.87285	0.0452401	0.0237189	0.0541023	0.0771194

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00057456 vs. Swiss-Prot (Human)

BLAST of TCONS_00057456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00057456 (transcript) - C. hemisphaerica