TCONS_00057443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057443
Unique NameTCONS_00057443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057443 ID=TCONS_00057443|Name=TCONS_00057443|organism=Clytia hemisphaerica|type=transcript|length=381bp
ccaaaaatgaaaaaaatccaagtttcaaactattggacctgccccgctct
tagaaaaactggctcttaaatAGCTCTGACTACTACTGATGAAttaggct
aactgttatgatcGATCATCAACACTCCAAAAAAGTCTCCGCACGTCAGC
ACGTCAGCACTGCCAGCCGGGTGCACCAATAGCTGGTTGAAGGGTTTGAT
GCCCTGTccaaaacatcagaaaaaaggtTCAATAAACTATCAAAGGAACT
GTGCAAAGCAGAGAACTTATCTTTTGTATATTGAAAAACCTTTATGCAGT
TGAAAGAATCCGTTTGGTCTGTTGGTCTTCTATCCTCTTTTTGCTATATA
TATCATTGTAGTTTTGAAGTTTTGCCTGCAA
Run BLAST on NCBI

transcript from alignment at scaffold_288:711955..712335

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057443 ID=TCONS_00057443|Name=TCONS_00057443|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at scaffold_288:711955..712335 (Clytia hemisphaerica)
TTGCAGGCAAAACTTCAAAACTACAATGATATATATAGCAAAAAGAGGAT
AGAAGACCAACAGACCAAACGGATTCTTTCAACTGCATAAAGGTTTTTCA
ATATACAAAAGATAAGTTCTCTGCTTTGCACAGTTCCTTTGATAGTTTAT
TGAaccttttttctgatgttttggACAGGGCATCAAACCCTTCAACCAGC
TATTGGTGCACCCGGCTGGCAGTGCTGACGTGCTGACGTGCGGAGACTTT
TTTGGAGTGTTGATGATCgatcataacagttagcctaaTTCATCAGTAGT
AGTCAGAGCTatttaagagccagtttttctaagagcggggcaggtccaat
agtttgaaacttggatttttttcatttttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036201XLOC_036201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057443-exon-scaffold_288-1491911889:711955..712335TCONS_00057443-exon-scaffold_288-1491911889:711955..712335Clytia hemisphaericaexon
TCONS_00057443-exon-scaffold_288-1510915933:711955..712335TCONS_00057443-exon-scaffold_288-1510915933:711955..712335Clytia hemisphaericaexon
TCONS_00057443-exon-scaffold_288-1575043694:711955..712335TCONS_00057443-exon-scaffold_288-1575043694:711955..712335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:711955..712335 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206266	0.201142	0.233545	0	0.278161	0	0	0	0	0.2153	0.8359	0.274744	0	0.427391	0.117125	0.251385	0.309686	0.158709	0	0	0.19943	0	0	0.215013	0.221459	0	0.282832	0	0	0.466505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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