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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057440 ID=TCONS_00057440|Name=TCONS_00057440|organism=Clytia hemisphaerica|type=transcript|length=1033bp
TTATTGATTTGTTAGGAAATATAGACTCCTTTACCGCACCTCCCGCTAAA
GTGCAAGCCGTGCCTGTACAAATACCGAAAGGAAAATCACTGAAACTTGA
AGCAGCTAGCGAGAATGAGAAAGAGAATATTTTGCTAAACGGGCAGGAGA
AGTTAGAGGTGTATTTGAACTCACAGAAAAAAGAATTCAAGATCAAAGTG
ACTTCTTCGAAAAGTGGTGAAACAGACGAGGGTGGAAAACAGGAGGAAGG
CGGACCTAAGGGCGGACAGAAAATTGATGCGAAGCTGAACGGAGGAGAAA
ATGAAACAAAGAGTTCAGATAAAGAAGAGGGCGAAGGGATCTCACCTGAA
ATTCAACCGACGACTGTGTCTGAGAATACTATAGGTGGAATGGAAacaaa
accccctggaaaaggcGATAGTTCGAGTCAAAAAGGTGGTGATGGTGATC
ATGAGACGGGTGTTAATCTTGAAGGAAAATGCAGTGTAGACGAAGAGGGA
CGAAACACTATAATGTTAGCTATGAACAATACGCTAGACAAACCGATAGC
TGTCGTGGAAACGATCAATAATTTGGAACCTATCATTATCCCGCCACACA
CGACCTGTAAAGTCGGGTTTGCCATACAGGGCACTGAATTCCTTATCTTA
ACTGGTATGATCATTGATGAGGGTGGACACAATCAAACCATTTTGTTGAA
CGGGCAGGATAACTTGTCAGTTGAGATTAAAACGAATCCAGATGATTTTA
AAGATATTCATGTGACTGGTAAGGATGTCGAACATAATTCGGAACAGATT
AACGTGCCCATCGATCACGAGACACTAAACGTATCAAGCTCGGGTTCTGT
ATCGTCTACCGAACACGAACCTGGACAGAATGGTACTGAAACGGGAACTG
AACAGCATGAAAAAGAAGCAAACGGTACTAAGGTTGACAACGGATCCAAC
ATGAAGCCAACCGATAAAGTTGAAcagaagattgaaaatgaaaaaccgAA
AAATGAGACAAAGACAACGGGAGATAAGACACA Run BLAST on NCBI protein sequence of TCONS_00057440-protein >TCONS_00057440-protein ID=TCONS_00057440-protein|Name=TCONS_00057440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
IDLLGNIDSFTAPPAKVQAVPVQIPKGKSLKLEAASENEKENILLNGQEK
LEVYLNSQKKEFKIKVTSSKSGETDEGGKQEEGGPKGGQKIDAKLNGGEN
ETKSSDKEEGEGISPEIQPTTVSENTIGGMETKPPGKGDSSSQKGGDGDH
ETGVNLEGKCSVDEEGRNTIMLAMNNTLDKPIAVVETINNLEPIIIPPHT
TCKVGFAIQGTEFLILTGMIIDEGGHNQTILLNGQDNLSVEIKTNPDDFK
DIHVTGKDVEHNSEQINVPIDHETLNVSSSGSVSSTEHEPGQNGTETGTE
QHEKEANGTKVDNGSNMKPTDKVEQKIENEKPKNETKTTGDKT Run BLAST on NCBI transcript from alignment at scaffold_288:610038..611070 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057440 ID=TCONS_00057440|Name=TCONS_00057440|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at scaffold_288:610038..611070 (Clytia hemisphaerica)
TGTGTCTTATCTCCCGTTGTCTTTGTCTCATTTTTcggtttttcattttc
aatcttctgTTCAACTTTATCGGTTGGCTTCATGTTGGATCCGTTGTCAA
CCTTAGTACCGTTTGCTTCTTTTTCATGCTGTTCAGTTCCCGTTTCAGTA
CCATTCTGTCCAGGTTCGTGTTCGGTAGACGATACAGAACCCGAGCTTGA
TACGTTTAGTGTCTCGTGATCGATGGGCACGTTAATCTGTTCCGAATTAT
GTTCGACATCCTTACCAGTCACATGAATATCTTTAAAATCATCTGGATTC
GTTTTAATCTCAACTGACAAGTTATCCTGCCCGTTCAACAAAATGGTTTG
ATTGTGTCCACCCTCATCAATGATCATACCAGTTAAGATAAGGAATTCAG
TGCCCTGTATGGCAAACCCGACTTTACAGGTCGTGTGTGGCGGGATAATG
ATAGGTTCCAAATTATTGATCGTTTCCACGACAGCTATCGGTTTGTCTAG
CGTATTGTTCATAGCTAACATTATAGTGTTTCGTCCCTCTTCGTCTACAC
TGCATTTTCCTTCAAGATTAACACCCGTCTCATGATCACCATCACCACCT
TTTTGACTCGAACTATCgccttttccagggggttttgtTTCCATTCCACC
TATAGTATTCTCAGACACAGTCGTCGGTTGAATTTCAGGTGAGATCCCTT
CGCCCTCTTCTTTATCTGAACTCTTTGTTTCATTTTCTCCTCCGTTCAGC
TTCGCATCAATTTTCTGTCCGCCCTTAGGTCCGCCTTCCTCCTGTTTTCC
ACCCTCGTCTGTTTCACCACTTTTCGAAGAAGTCACTTTGATCTTGAATT
CTTTTTTCTGTGAGTTCAAATACACCTCTAACTTCTCCTGCCCGTTTAGC
AAAATATTCTCTTTCTCATTCTCGCTAGCTGCTTCAAGTTTCAGTGATTT
TCCTTTCGGTATTTGTACAGGCACGGCTTGCACTTTAGCGGGAGGTGCGG
TAAAGGAGTCTATATTTCCTAACAAATCAATAA Coding sequence (CDS) from alignment at scaffold_288:610038..611070 >TCONS_00057440 ID=TCONS_00057440|Name=TCONS_00057440|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at scaffold_288:610038..611070 (Clytia hemisphaerica)
TGTCTTATCTCCCGTTGTCTTTGTCTCATTTTTcggtttttcattttcaa
tcttctgTTCAACTTTATCGGTTGGCTTCATGTTGGATCCGTTGTCAACC
TTAGTACCGTTTGCTTCTTTTTCATGCTGTTCAGTTCCCGTTTCAGTACC
ATTCTGTCCAGGTTCGTGTTCGGTAGACGATACAGAACCCGAGCTTGATA
CGTTTAGTGTCTCGTGATCGATGGGCACGTTAATCTGTTCCGAATTATGT
TCGACATCCTTACCAGTCACATGAATATCTTTAAAATCATCTGGATTCGT
TTTAATCTCAACTGACAAGTTATCCTGCCCGTTCAACAAAATGGTTTGAT
TGTGTCCACCCTCATCAATGATCATACCAGTTAAGATAAGGAATTCAGTG
CCCTGTATGGCAAACCCGACTTTACAGGTCGTGTGTGGCGGGATAATGAT
AGGTTCCAAATTATTGATCGTTTCCACGACAGCTATCGGTTTGTCTAGCG
TATTGTTCATAGCTAACATTATAGTGTTTCGTCCCTCTTCGTCTACACTG
CATTTTCCTTCAAGATTAACACCCGTCTCATGATCACCATCACCACCTTT
TTGACTCGAACTATCgccttttccagggggttttgtTTCCATTCCACCTA
TAGTATTCTCAGACACAGTCGTCGGTTGAATTTCAGGTGAGATCCCTTCG
CCCTCTTCTTTATCTGAACTCTTTGTTTCATTTTCTCCTCCGTTCAGCTT
CGCATCAATTTTCTGTCCGCCCTTAGGTCCGCCTTCCTCCTGTTTTCCAC
CCTCGTCTGTTTCACCACTTTTCGAAGAAGTCACTTTGATCTTGAATTCT
TTTTTCTGTGAGTTCAAATACACCTCTAACTTCTCCTGCCCGTTTAGCAA
AATATTCTCTTTCTCATTCTCGCTAGCTGCTTCAAGTTTCAGTGATTTTC
CTTTCGGTATTTGTACAGGCACGGCTTGCACTTTAGCGGGAGGTGCGGTA
AAGGAGTCTATATTTCCTAACAAATCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057440-exon-scaffold_288-1491911889:610038..611070 | TCONS_00057440-exon-scaffold_288-1491911889:610038..611070 | Clytia hemisphaerica | exon |
| TCONS_00057440-exon-scaffold_288-1510915933:610038..611070 | TCONS_00057440-exon-scaffold_288-1510915933:610038..611070 | Clytia hemisphaerica | exon |
| TCONS_00057440-exon-scaffold_288-1575043694:610038..611070 | TCONS_00057440-exon-scaffold_288-1575043694:610038..611070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:610038..611070 . |
Blast
The following BLAST results are available for this feature:
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