TCONS_00057439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057439
Unique NameTCONS_00057439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057439 ID=TCONS_00057439|Name=TCONS_00057439|organism=Clytia hemisphaerica|type=transcript|length=361bp
AAAATAAACCCGATTCTCCCAATCAAAGCAACAATAAAACCGAAACGGGG
AAAGGAAAACCCGATTCGAACGAAGGTGGAAATCCCTCCCAATCTAAGAA
TACTACAGGTGATACGATAACCGACAATAAAAACACAACGCAAACAGACC
TAGGAAAGGATGAAAAAGAGTCAACAGCCGAAAAACCTTTGATTGATAAT
TTTAACCAAACCAAAACAGATAATGGAACATTGGATCAAACAAAAACTCA
ACCAAAGGTCATTTTAAACAAAGAAGTTGGCGATTGGAATTCGACCACAA
TTATACCAAAAGCAGACCAAAATGACACTGCAACTGTCAACTCCTCAAAT
CAACAATCGGG
Run BLAST on NCBI

protein sequence of TCONS_00057439-protein

>TCONS_00057439-protein ID=TCONS_00057439-protein|Name=TCONS_00057439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
NKPDSPNQSNNKTETGKGKPDSNEGGNPSQSKNTTGDTITDNKNTTQTDL
GKDEKESTAEKPLIDNFNQTKTDNGTLDQTKTQPKVILNKEVGDWNSTTI
IPKADQNDTATVNSSNQQS
Run BLAST on NCBI

transcript from alignment at scaffold_288:608853..609213

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057439 ID=TCONS_00057439|Name=TCONS_00057439|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at scaffold_288:608853..609213 (Clytia hemisphaerica)
CCCGATTGTTGATTTGAGGAGTTGACAGTTGCAGTGTCATTTTGGTCTGC
TTTTGGTATAATTGTGGTCGAATTCCAATCGCCAACTTCTTTGTTTAAAA
TGACCTTTGGTTGAGTTTTTGTTTGATCCAATGTTCCATTATCTGTTTTG
GTTTGGTTAAAATTATCAATCAAAGGTTTTTCGGCTGTTGACTCTTTTTC
ATCCTTTCCTAGGTCTGTTTGCGTTGTGTTTTTATTGTCGGTTATCGTAT
CACCTGTAGTATTCTTAGATTGGGAGGGATTTCCACCTTCGTTCGAATCG
GGTTTTCCTTTCCCCGTTTCGGTTTTATTGTTGCTTTGATTGGGAGAATC
GGGTTTATTTT

Coding sequence (CDS) from alignment at scaffold_288:608853..609213

>TCONS_00057439 ID=TCONS_00057439|Name=TCONS_00057439|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_288:608853..609213 (Clytia hemisphaerica)
CGATTGTTGATTTGAGGAGTTGACAGTTGCAGTGTCATTTTGGTCTGCTT
TTGGTATAATTGTGGTCGAATTCCAATCGCCAACTTCTTTGTTTAAAATG
ACCTTTGGTTGAGTTTTTGTTTGATCCAATGTTCCATTATCTGTTTTGGT
TTGGTTAAAATTATCAATCAAAGGTTTTTCGGCTGTTGACTCTTTTTCAT
CCTTTCCTAGGTCTGTTTGCGTTGTGTTTTTATTGTCGGTTATCGTATCA
CCTGTAGTATTCTTAGATTGGGAGGGATTTCCACCTTCGTTCGAATCGGG
TTTTCCTTTCCCCGTTTCGGTTTTATTGTTGCTTTGATTGGGAGAATCGG
GTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036197XLOC_036197Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057439-proteinTCONS_00057439-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057439-exon-scaffold_288-1491911889:608853..609213TCONS_00057439-exon-scaffold_288-1491911889:608853..609213Clytia hemisphaericaexon
TCONS_00057439-exon-scaffold_288-1510915933:608853..609213TCONS_00057439-exon-scaffold_288-1510915933:608853..609213Clytia hemisphaericaexon
TCONS_00057439-exon-scaffold_288-1575043694:608853..609213TCONS_00057439-exon-scaffold_288-1575043694:608853..609213Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:608853..609213 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.264274	0.517102	1.25904	0.994914	1.80048	1.40466	0.196687	0.243628	0.945887	0.310894	0.310462	0.322418	0.397607	2.13347	0	0.359184	0	0	0	0	0.267619	0.243304	2.25538	1.78922	0	0	0.259063	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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