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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057438 ID=TCONS_00057438|Name=TCONS_00057438|organism=Clytia hemisphaerica|type=transcript|length=1015bp
attattttctaattcgtacctcaaacgaaaataacatatttatttcaaca
ccaatcgtatattttataaaaacatcctaTAAACATTTTACAAATAGATA
AATCATAACAATAGTTCTAGTGATAAGCTGTAAAGAACACTGTGACAGTC
ACAGAGTGGTCTGGGAAAGGTCTATTTAATGTAGAATTCTTTTGACTTTA
ATAATGGGTACTAAAAACGTAGGTGCAAAGAGGTTTATCTTTCACGTAGC
CATATTTGGCCTTTTCACCTTTTGTTTGAAAAGTCTAACCGAGACTCCTT
CATTCACGGCTGCAGTATCTCCAGAGCGTATAAGCTGTGCAAGCCAAATC
TTTTCCTTTTCGAACCAGTTCGTGTAGCCGTGTCGAGCATGTTTGATCTT
GCTGCAGAGTAAAACTTTGCAAGGATTGACCAAGTTCCAAGTGTTGAAGT
ATGATCTGTATTTCTCGACGGTGAACGGCTTTTCAAAATGATACCAGGGA
CTTGATTAGCGAGACGTTTGAAATTTGGATGTTCTACTGATTCGGCAATT
GACGCAACGAGATCATCTAAATGTAGAGGAGAAAAGAACGCCAGAAAAGG
ATAATTATAGATGGGATAGGATTATAAAGTTCGTTAGTTGGCTTCTCAAG
GATCTCTCTCCCTTTTGTGATGATTATAGATTCTACTAACATTCTTACTG
TAGAATTCGTCTCGGATCATAGACCAAAATGGGGCAGATTTCCACAAGGG
GATCACGAGGGTACCTTTGCATTGACTATGTAAGATAAACTTTAGTGCTT
CTGGGATAAGATCGACCGGTGGAACTACGTAATTTATCTCGTTGGACCAG
TTTTCTGAAAACGCGTCCACTACTTCGCAGCCTgggacaaaaaatttcga
attgaACCTTGGCAATTTTGTGTTTTCTGGGCGTGCAAAGCGATCTACTG
AGAAAGGACCCCAACGTTTGTTCAAAAAGGCAAAGAATTCGTCTGTAATT
TGCCAGTCGTCAAAG Run BLAST on NCBI protein sequence of TCONS_00057438-protein >TCONS_00057438-protein ID=TCONS_00057438-protein|Name=TCONS_00057438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
FDDWQITDEFFAFLNKRWGPFSVDRFARPENTKLPRFNSKFFVPGCEVVD
AFSENWSNEINYVVPPVDLIPEALKFILHSQCKGTLVIPLWKSAPFWSMI
RDEFYSKNVSRIYNHHKRERDP Run BLAST on NCBI transcript from alignment at scaffold_288:542874..543888 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057438 ID=TCONS_00057438|Name=TCONS_00057438|organism=Clytia hemisphaerica|type=transcript|length=1015bp|location=Sequence derived from alignment at scaffold_288:542874..543888 (Clytia hemisphaerica)
CTTTGACGACTGGCAAATTACAGACGAATTCTTTGCCTTTTTGAACAAAC
GTTGGGGTCCTTTCTCAGTAGATCGCTTTGCACGCCCAGAAAACACAAAA
TTGCCAAGGTtcaattcgaaattttttgtcccAGGCTGCGAAGTAGTGGA
CGCGTTTTCAGAAAACTGGTCCAACGAGATAAATTACGTAGTTCCACCGG
TCGATCTTATCCCAGAAGCACTAAAGTTTATCTTACATAGTCAATGCAAA
GGTACCCTCGTGATCCCCTTGTGGAAATCTGCCCCATTTTGGTCTATGAT
CCGAGACGAATTCTACAGTAAGAATGTTAGTAGAATCTATAATCATCACA
AAAGGGAGAGAGATCCTTGAGAAGCCAACTAACGAACTTTATAATCCTAT
CCCATCTATAATTATCCTTTTCTGGCGTTCTTTTCTCCTCTACATTTAGA
TGATCTCGTTGCGTCAATTGCCGAATCAGTAGAACATCCAAATTTCAAAC
GTCTCGCTAATCAAGTCCCTGGTATCATTTTGAAAAGCCGTTCACCGTCG
AGAAATACAGATCATACTTCAACACTTGGAACTTGGTCAATCCTTGCAAA
GTTTTACTCTGCAGCAAGATCAAACATGCTCGACACGGCTACACGAACTG
GTTCGAAAAGGAAAAGATTTGGCTTGCACAGCTTATACGCTCTGGAGATA
CTGCAGCCGTGAATGAAGGAGTCTCGGTTAGACTTTTCAAACAAAAGGTG
AAAAGGCCAAATATGGCTACGTGAAAGATAAACCTCTTTGCACCTACGTT
TTTAGTACCCATTATTAAAGTCAAAAGAATTCTACATTAAATAGACCTTT
CCCAGACCACTCTGTGACTGTCACAGTGTTCTTTACAGCTTATCACTAGA
ACTATTGTTATGATTTATCTATTTGTAAAATGTTTAtaggatgtttttat
aaaatatacgattggtgttgaaataaatatgttattttcgtttgaggtac
gaattagaaaataat Coding sequence (CDS) from alignment at scaffold_288:542874..543888 >TCONS_00057438 ID=TCONS_00057438|Name=TCONS_00057438|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_288:542874..543888 (Clytia hemisphaerica)
TTTGACGACTGGCAAATTACAGACGAATTCTTTGCCTTTTTGAACAAACG
TTGGGGTCCTTTCTCAGTAGATCGCTTTGCACGCCCAGAAAACACAAAAT
TGCCAAGGTtcaattcgaaattttttgtcccAGGCTGCGAAGTAGTGGAC
GCGTTTTCAGAAAACTGGTCCAACGAGATAAATTACGTAGTTCCACCGGT
CGATCTTATCCCAGAAGCACTAAAGTTTATCTTACATAGTCAATGCAAAG
GTACCCTCGTGATCCCCTTGTGGAAATCTGCCCCATTTTGGTCTATGATC
CGAGACGAATTCTACAGTAAGAATGTTAGTAGAATCTATAATCATCACAA
AAGGGAGAGAGATCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057438-exon-scaffold_288-1491911889:542874..543888 | TCONS_00057438-exon-scaffold_288-1491911889:542874..543888 | Clytia hemisphaerica | exon |
| TCONS_00057438-exon-scaffold_288-1510915933:542874..543888 | TCONS_00057438-exon-scaffold_288-1510915933:542874..543888 | Clytia hemisphaerica | exon |
| TCONS_00057438-exon-scaffold_288-1575043694:542874..543888 | TCONS_00057438-exon-scaffold_288-1575043694:542874..543888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:542874..543888 . |
Blast
The following BLAST results are available for this feature:
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