TCONS_00057436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057436
Unique NameTCONS_00057436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057436 ID=TCONS_00057436|Name=TCONS_00057436|organism=Clytia hemisphaerica|type=transcript|length=1800bp
CTTTTCCGAATTTATCCAATCAAAACCTCTAATTTTTCACATAATGGTAT
CCTGACAGTGGACGTCATTTTAGGCGAGGAGAGCTGGAAGAAGAAGTCAG
TGTCAGTCGTCAAAGACAGAAAGAAACTGATTTAAATTCCACCAATATGT
CAACATTTGAAGCTGTAAAATATTTTCGAGAATCTTTACGTAAAGATCCA
GAATTATCTATCCCCTTGGCCGCCATTAAGACTTTgataaaaattattga
agtctCTGAGGAAGTCTCATTGCAAGGTTTGGACGCGTCATTAAAAACTG
TGATCAAGGATTTAGAAAACAGTTCTGACAACTCCATTACATCGATAACC
TCAGGATGTGAACTTTTACAAAGATTCATCACTCTGGCTGCTCCTGATGC
GTTgttatcaaaagatttttcagaATGTAAGAAGGTGTTAGCAATGAGAG
GCAAGCTATTTCTACAACAAGCTCACAATTCTCGAAATCAGATTTCAAAA
TTGAGTCAACAATTCATTCAAGATGGATGTGTGATTCTTATCCATGCGCG
TTCACGTGTCATCATACATCTCTTGGTTCAAGCTgctaaaatgaataaaa
agtttACTGTTTATGTAACTGAGTCAATGCCAGATCAACAAGGacttgaa
acaaaacaaatactTGAACAACATAACATTTCTTGTAAAGTGATTCTTGA
CTCTTCAGTTGGTTTTATAATGGAACGAGTTGACATGGTTTTACTAGGTG
CAGAAGCCGTTGTTGAAAGTGGTGGCATTATTAATAAAATTGGTACATTT
CAAATGGCAGTTACTGCTAAAGCAATGAATAAGCCTGTTTATGTTGCTGC
AGAGAGCTTTAAATTCTTGAGAGAATATCCATTGAAACAAACAGAAGTTT
CAAATAAatacaaatatttcaaaaactgtGAAAATGGCCATCCTTCTGTT
GATTACACTCCGCCTTCATACATTGCACTCTTATTCACAGATCTAGGTGT
TTTAACACCTTCTGCAGTTAGTGATGAACTTATTAAATTATATctctaaa
tataataaaatattgTGTACTTTAATTTATAAATTGGAGCATTTCTTGAT
TtcaaacaacttttttgctgGTTAGGtaaggccaatttaatttgttgttt
tacagaCCAAGtgaagctacccaaaaaagagggttggtccgaaaaaatga
aaatattgggATTGGAACTTCATTCAGGGTTGGtcaggcccgtaaaacaa
ctaatcaaatagaccttttttcaaagaggccaccctgttgaataattatg
tagtccagcagaaaaacaatgataaaaccatgcataattattacaatatg
catgatacagtaattatgcatggctctatcattgtttttatggctggagt
acataattattcaacagttcaacaggacgtcctctttgaaaaaaggtcta
ttggtctCGTCTTNTACAGGCCAAGtgaagctacccaaaaaagagggttg
gtctgagaaaatgaaaatattggaaTTTGAACTTCATTCAGGGTTGGtca
ggcccgtaaaacaactaatcaaattggtctcgtctTAAAATTGCTATTGC
CAAGGccattatcaaaattttgttttaggaATTATTATTTACAAAATATG
GAGCTCAATTTGAAACATTTCGAATTCATAACTGAACAATGTAAACTTCA
ACATATTTTTAATGTTATATTCAAATATCTTATTACTCTAGCATCAAAAT
AATCACAATCTTAACAACCCCCACCCCCTCCATCCACCAGAGATAAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00057436-protein

>TCONS_00057436-protein ID=TCONS_00057436-protein|Name=TCONS_00057436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MSTFEAVKYFRESLRKDPELSIPLAAIKTLIKIIEVSEEVSLQGLDASLK
TVIKDLENSSDNSITSITSGCELLQRFITLAAPDALLSKDFSECKKVLAM
RGKLFLQQAHNSRNQISKLSQQFIQDGCVILIHARSRVIIHLLVQAAKMN
KKFTVYVTESMPDQQGLETKQILEQHNISCKVILDSSVGFIMERVDMVLL
GAEAVVESGGIINKIGTFQMAVTAKAMNKPVYVAAESFKFLREYPLKQTE
VSNKYKYFKNCENGHPSVDYTPPSYIALLFTDLGVLTPSAVSDELIKLYL
Run BLAST on NCBI

transcript from alignment at scaffold_288:536678..538477

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057436 ID=TCONS_00057436|Name=TCONS_00057436|organism=Clytia hemisphaerica|type=transcript|length=1800bp|location=Sequence derived from alignment at scaffold_288:536678..538477 (Clytia hemisphaerica)
GTTCTTATCTCTGGTGGATGGAGGGGGTGGGGGTTGTTAAGATTGTGATT
ATTTTGATGCTAGAGTAATAAGATATTTGAATATAACATTAAAAATATGT
TGAAGTTTACATTGTTCAGTTATGAATTCGAAATGTTTCAAATTGAGCTC
CATATTTTGTAAATAATAATtcctaaaacaaaattttgataatggCCTTG
GCAATAGCAATTTTAagacgagaccaatttgattagttgttttacgggcc
tgaCCAACCCTGAATGAAGTTCAAAttccaatattttcattttctcagac
caaccctcttttttgggtagcttcaCTTGGCCTGTANAAGACGagaccaa
tagaccttttttcaaagaggacgtcctgttgaactgttgaataattatgt
actccagccataaaaacaatgatagagccatgcataattactgtatcatg
catattgtaataattatgcatggttttatcattgtttttctgctggacta
cataattattcaacagggtggcctctttgaaaaaaggtctatttgattag
ttgttttacgggcctgaCCAACCCTGAATGAAGTTCCAATcccaatattt
tcattttttcggaccaaccctcttttttgggtagcttcaCTTGGtctgta
aaacaacaaattaaattggccttaCCTAACcagcaaaaaagttgtttgaA
ATCAAGAAATGCTCCAATTTATAAATTAAAGTACAcaatattttattata
tttagagATATAATTTAATAAGTTCATCACTAACTGCAGAAGGTGTTAAA
ACACCTAGATCTGTGAATAAGAGTGCAATGTATGAAGGCGGAGTGTAATC
AACAGAAGGATGGCCATTTTCacagtttttgaaatatttgtatTTATTTG
AAACTTCTGTTTGTTTCAATGGATATTCTCTCAAGAATTTAAAGCTCTCT
GCAGCAACATAAACAGGCTTATTCATTGCTTTAGCAGTAACTGCCATTTG
AAATGTACCAATTTTATTAATAATGCCACCACTTTCAACAACGGCTTCTG
CACCTAGTAAAACCATGTCAACTCGTTCCATTATAAAACCAACTGAAGAG
TCAAGAATCACTTTACAAGAAATGTTATGTTGTTCAagtatttgttttgt
ttcaagtCCTTGTTGATCTGGCATTGACTCAGTTACATAAACAGTaaact
ttttattcattttagcAGCTTGAACCAAGAGATGTATGATGACACGTGAA
CGCGCATGGATAAGAATCACACATCCATCTTGAATGAATTGTTGACTCAA
TTTTGAAATCTGATTTCGAGAATTGTGAGCTTGTTGTAGAAATAGCTTGC
CTCTCATTGCTAACACCTTCTTACATtctgaaaaatcttttgataacAAC
GCATCAGGAGCAGCCAGAGTGATGAATCTTTGTAAAAGTTCACATCCTGA
GGTTATCGATGTAATGGAGTTGTCAGAACTGTTTTCTAAATCCTTGATCA
CAGTTTTTAATGACGCGTCCAAACCTTGCAATGAGACTTCCTCAGagact
tcaataatttttatcAAAGTCTTAATGGCGGCCAAGGGGATAGATAATTC
TGGATCTTTACGTAAAGATTCTCGAAAATATTTTACAGCTTCAAATGTTG
ACATATTGGTGGAATTTAAATCAGTTTCTTTCTGTCTTTGACGACTGACA
CTGACTTCTTCTTCCAGCTCTCCTCGCCTAAAATGACGTCCACTGTCAGG
ATACCATTATGTGAAAAATTAGAGGTTTTGATTGGATAAATTCGGAAAAG

Coding sequence (CDS) from alignment at scaffold_288:536678..538477

>TCONS_00057436 ID=TCONS_00057436|Name=TCONS_00057436|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_288:536678..538477 (Clytia hemisphaerica)
ttagagATATAATTTAATAAGTTCATCACTAACTGCAGAAGGTGTTAAAA
CACCTAGATCTGTGAATAAGAGTGCAATGTATGAAGGCGGAGTGTAATCA
ACAGAAGGATGGCCATTTTCacagtttttgaaatatttgtatTTATTTGA
AACTTCTGTTTGTTTCAATGGATATTCTCTCAAGAATTTAAAGCTCTCTG
CAGCAACATAAACAGGCTTATTCATTGCTTTAGCAGTAACTGCCATTTGA
AATGTACCAATTTTATTAATAATGCCACCACTTTCAACAACGGCTTCTGC
ACCTAGTAAAACCATGTCAACTCGTTCCATTATAAAACCAACTGAAGAGT
CAAGAATCACTTTACAAGAAATGTTATGTTGTTCAagtatttgttttgtt
tcaagtCCTTGTTGATCTGGCATTGACTCAGTTACATAAACAGTaaactt
tttattcattttagcAGCTTGAACCAAGAGATGTATGATGACACGTGAAC
GCGCATGGATAAGAATCACACATCCATCTTGAATGAATTGTTGACTCAAT
TTTGAAATCTGATTTCGAGAATTGTGAGCTTGTTGTAGAAATAGCTTGCC
TCTCATTGCTAACACCTTCTTACATtctgaaaaatcttttgataacAACG
CATCAGGAGCAGCCAGAGTGATGAATCTTTGTAAAAGTTCACATCCTGAG
GTTATCGATGTAATGGAGTTGTCAGAACTGTTTTCTAAATCCTTGATCAC
AGTTTTTAATGACGCGTCCAAACCTTGCAATGAGACTTCCTCAGagactt
caataatttttatcAAAGTCTTAATGGCGGCCAAGGGGATAGATAATTCT
GGATCTTTACGTAAAGATTCTCGAAAATATTTTACAGCTTCAAATGTTGA
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036194XLOC_036194Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057436-proteinTCONS_00057436-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057436-exon-scaffold_288-1491911889:536678..538477TCONS_00057436-exon-scaffold_288-1491911889:536678..538477Clytia hemisphaericaexon
TCONS_00057436-exon-scaffold_288-1510915933:536678..538477TCONS_00057436-exon-scaffold_288-1510915933:536678..538477Clytia hemisphaericaexon
TCONS_00057436-exon-scaffold_288-1575043694:536678..538477TCONS_00057436-exon-scaffold_288-1575043694:536678..538477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:536678..538477 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.1446	34.425	17.0537	16.4965	11.933	9.30495	12.7729	14.9864	12.6429	11.4429	11.6824	9.15446	10.2682	9.74673	10.0797	12.8861	7.50289	9.37817	6.42997	6.78592	9.72623	8.66717	23.7733	20.775	7.47544	10.9528	15.4577	11.571	18.273	17.2348
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000649IF-2B-related
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
Blast
[Close]
BLAST of TCONS_00057436 vs. Swiss-Prot (Human)
Match: EI2BA (Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.511e-92
Identity = 155/310 (50.00%), Postives = 215/310 (69.35%), Query Frame = 3 
Query:  147 MSTFEAVKYFRESLRKDPELSIPLAAIKTLIKIIEVSEEVSLQGLDASLKTVIKDLEXXXXXXXXXXXXGCELLQRFITLAAPDALLSKDFSECKKVLAMRGKLFLQQAHNSRNQISKLSQQFIQDGCVILIHARSRVIIHLLVQAAKMNKKFTVYVTESMPDQQGLETKQILEQHNISCKVILDSSVGFIMERVDMVLLGAEAVVESGGIINKIGTFQMAVTAKAMNKPVYVAAESFKFLREYPLKQTEVSNKYKY----FKNCENG------HPSVDYTPPSYIALLFTDLGVLTPSAVSDELIKLYL 1046
            M   E ++YF+  +++DP+++  +AAI+TL++ ++  +  ++QGL A+L + I+ L     +S  +++SG EL  RFI+LA+   L   D+S+CKK++  RG+LFL++   SRN+I+ L   FI+DG  IL HA SRV++ +L  A    K+F+VYVTES PD  G +  + L   N+   V+LD++VG+IME+ D+V++GAE VVE+GGIINKIGT QMAV AKA NKP YV AESFKF+R +PL Q +V +K+KY     K  + G      HP VDYT PS I LLFTDLGVLTPSAVSDELIKLYL
Sbjct:    1 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETL--CGVDSSVAVSSGGELFLRFISLAS---LEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYL 305
The following BLAST results are available for this feature:
BLAST of TCONS_00057436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EI2BA1.511e-9250.00Translation initiation factor eIF-2B subunit alpha... [more]
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