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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057431 ID=TCONS_00057431|Name=TCONS_00057431|organism=Clytia hemisphaerica|type=transcript|length=1517bp
AGAAAAGCTCTCTTTTTCATTACCTTATATTTGTCTTCCCACTGCACTCT
GAACAACCTTCCGTAACTTTGTTGTGACGTCATCTCTTCCTCATAGAGCT
GTTTGAACGTCAACCAACCTTTCGGACGGCCGGCTGGCCATAGAATGGTG
ACGCGGTGATAGTTTGCTAACAAACGGGTTGTTGTCTGATAACTTTTCAA
CATTATGTGTCTTGTTTGTAGATCAGTAAACATATCTGTTGAGGGGTTGG
ATAAAGTGATAGACGGGTTTAAAACCGTCGTCGCTTTTTCGACGGCTTCT
GTTGTTGGTAGCAGATAATCTACGTAAAGAAACGTGTAGACGTAAGAATT
GTCGGGAGGTCTGATTTTGATTTGTTTCGAGTCCACGTCACGTAATATCC
ACGTAACGCCGTCCAGGCCAGACGTTGACGCGTAATTTACCAATTGAGCT
TGCTTTTCTGGTTCCCCAAAAAGAAGGACgactttttgtgattttgtttc
atttaaaaGTCTAATGACTCGATTTTTCGTGTTGAGCGTGTTTTCGTGAA
TAGTTTCTAAGTGAAAGCATCTCTGCGTGATATTGAAAAGTTGGATGAAC
GAGTTAAAATAAATTTGTTGCATTGTTGAGTCTTTCTGTTCGAAATGGAT
CACATGTAAATGTTCGATTCCGTGAGTTTCAAGCAGTTCTATCAAATCCT
TTGTTTCGTGTTCAACTCGATCACCAGCCAATCGGAACCTCGTATTTTGG
TTCACCTCCTCATCGAGCGAAGTTTGGTTTAAATTCATCATCGTTACCAC
CAAAAAATGTTCGGCCTCCCATAAGAATGTTTTGAAGCGTTGGACCAACC
AATTATCTGCGTAAATGATAACAGCCAGTATCCTTGACAACCGTTGCCAA
TGGTTATTATCAATGACGCCATCTCTCCATGATGGATATTGTTGGTCGTT
CTCAGCTTTCAGATGAAATTTTCTACTCAAGAGGATCTCAGAGAAAACTG
AAGCCAGATCTTGTTCATCGCATATATCGTAAGGTATAAACTCTATATCA
TCGATTGTGAATCCTCGGTCCTTGATATGTTTATAAGCCCAGAATCTACG
TAACAGAAGATCATTGATAATGTCTTGATTCGATGGATGGAATATCGATT
GAGATGTCCGGTATGCGATTTCAGCTTCTCTGTTGAGAAGAGTTCGATTA
ATTGTGGCGTTAGCGGAACAGCTTTGGTGTATTGAAACTAAGAGATGACG
TTGACCTCCAGGTCTGAATGGATGTTTTGATGCTTGAGATGAATGTTGGA
TTATGAAATATAAGGTTGCAGTTAATCTGAGAATGCGGGATACATGGGCC
ATTCCTTAGCGAATTTTTAATATCTCTGAAAATGTCAAACCCTGTATATC
TTTGAATAAACTGAAAACTAGAAATGTTGAGTCTCTGTTTTCCTTGTTTT
TGCAAGAAAGATTCTACTAAATCGTTCACCTCAAGTACAATGATATTGGT
GCCTTCTTCTTCGTTGG Run BLAST on NCBI protein sequence of TCONS_00057431-protein >TCONS_00057431-protein ID=TCONS_00057431-protein|Name=TCONS_00057431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MAHVSRILRLTATLYFIIQHSSQASKHPFRPGGQRHLLVSIHQSCSANAT
INRTLLNREAEIAYRTSQSIFHPSNQDIINDLLLRRFWAYKHIKDRGFTI
DDIEFIPYDICDEQDLASVFSEILLSRKFHLKAENDQQYPSWRDGVIDNN
HWQRLSRILAVIIYADNWLVQRFKTFLWEAEHFLVVTMMNLNQTSLDEEV
NQNTRFRLAGDRVEHETKDLIELLETHGIEHLHVIHFEQKDSTMQQIYFN
SFIQLFNITQRCFHLETIHENTLNTKNRVIRLLNETKSQKVVLLFGEPEK
QAQLVNYASTSGLDGVTWILRDVDSKQIKIRPPDNSYVYTFLYVDYLLPT
TEAVEKATTVLNPSITLSNPSTDMFTDLQTRHIMLKSYQTTTRLLANYHR
VTILWPAGRPKGWLTFKQLYEEEMTSQQSYGRLFRVQWEDKYKVMKKRAF Run BLAST on NCBI transcript from alignment at scaffold_288:437075..438591 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057431 ID=TCONS_00057431|Name=TCONS_00057431|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at scaffold_288:437075..438591 (Clytia hemisphaerica)
CCAACGAAGAAGAAGGCACCAATATCATTGTACTTGAGGTGAACGATTTA
GTAGAATCTTTCTTGCAAAAACAAGGAAAACAGAGACTCAACATTTCTAG
TTTTCAGTTTATTCAAAGATATACAGGGTTTGACATTTTCAGAGATATTA
AAAATTCGCTAAGGAATGGCCCATGTATCCCGCATTCTCAGATTAACTGC
AACCTTATATTTCATAATCCAACATTCATCTCAAGCATCAAAACATCCAT
TCAGACCTGGAGGTCAACGTCATCTCTTAGTTTCAATACACCAAAGCTGT
TCCGCTAACGCCACAATTAATCGAACTCTTCTCAACAGAGAAGCTGAAAT
CGCATACCGGACATCTCAATCGATATTCCATCCATCGAATCAAGACATTA
TCAATGATCTTCTGTTACGTAGATTCTGGGCTTATAAACATATCAAGGAC
CGAGGATTCACAATCGATGATATAGAGTTTATACCTTACGATATATGCGA
TGAACAAGATCTGGCTTCAGTTTTCTCTGAGATCCTCTTGAGTAGAAAAT
TTCATCTGAAAGCTGAGAACGACCAACAATATCCATCATGGAGAGATGGC
GTCATTGATAATAACCATTGGCAACGGTTGTCAAGGATACTGGCTGTTAT
CATTTACGCAGATAATTGGTTGGTCCAACGCTTCAAAACATTCTTATGGG
AGGCCGAACATTTTTTGGTGGTAACGATGATGAATTTAAACCAAACTTCG
CTCGATGAGGAGGTGAACCAAAATACGAGGTTCCGATTGGCTGGTGATCG
AGTTGAACACGAAACAAAGGATTTGATAGAACTGCTTGAAACTCACGGAA
TCGAACATTTACATGTGATCCATTTCGAACAGAAAGACTCAACAATGCAA
CAAATTTATTTTAACTCGTTCATCCAACTTTTCAATATCACGCAGAGATG
CTTTCACTTAGAAACTATTCACGAAAACACGCTCAACACGAAAAATCGAG
TCATTAGACttttaaatgaaacaaaatcacaaaaagtcGTCCTTCTTTTT
GGGGAACCAGAAAAGCAAGCTCAATTGGTAAATTACGCGTCAACGTCTGG
CCTGGACGGCGTTACGTGGATATTACGTGACGTGGACTCGAAACAAATCA
AAATCAGACCTCCCGACAATTCTTACGTCTACACGTTTCTTTACGTAGAT
TATCTGCTACCAACAACAGAAGCCGTCGAAAAAGCGACGACGGTTTTAAA
CCCGTCTATCACTTTATCCAACCCCTCAACAGATATGTTTACTGATCTAC
AAACAAGACACATAATGTTGAAAAGTTATCAGACAACAACCCGTTTGTTA
GCAAACTATCACCGCGTCACCATTCTATGGCCAGCCGGCCGTCCGAAAGG
TTGGTTGACGTTCAAACAGCTCTATGAGGAAGAGATGACGTCACAACAAA
GTTACGGAAGGTTGTTCAGAGTGCAGTGGGAAGACAAATATAAGGTAATG
AAAAAGAGAGCTTTTCT Coding sequence (CDS) from alignment at scaffold_288:437075..438591 >TCONS_00057431 ID=TCONS_00057431|Name=TCONS_00057431|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_288:437075..438591 (Clytia hemisphaerica)
ATGGCCCATGTATCCCGCATTCTCAGATTAACTGCAACCTTATATTTCAT
AATCCAACATTCATCTCAAGCATCAAAACATCCATTCAGACCTGGAGGTC
AACGTCATCTCTTAGTTTCAATACACCAAAGCTGTTCCGCTAACGCCACA
ATTAATCGAACTCTTCTCAACAGAGAAGCTGAAATCGCATACCGGACATC
TCAATCGATATTCCATCCATCGAATCAAGACATTATCAATGATCTTCTGT
TACGTAGATTCTGGGCTTATAAACATATCAAGGACCGAGGATTCACAATC
GATGATATAGAGTTTATACCTTACGATATATGCGATGAACAAGATCTGGC
TTCAGTTTTCTCTGAGATCCTCTTGAGTAGAAAATTTCATCTGAAAGCTG
AGAACGACCAACAATATCCATCATGGAGAGATGGCGTCATTGATAATAAC
CATTGGCAACGGTTGTCAAGGATACTGGCTGTTATCATTTACGCAGATAA
TTGGTTGGTCCAACGCTTCAAAACATTCTTATGGGAGGCCGAACATTTTT
TGGTGGTAACGATGATGAATTTAAACCAAACTTCGCTCGATGAGGAGGTG
AACCAAAATACGAGGTTCCGATTGGCTGGTGATCGAGTTGAACACGAAAC
AAAGGATTTGATAGAACTGCTTGAAACTCACGGAATCGAACATTTACATG
TGATCCATTTCGAACAGAAAGACTCAACAATGCAACAAATTTATTTTAAC
TCGTTCATCCAACTTTTCAATATCACGCAGAGATGCTTTCACTTAGAAAC
TATTCACGAAAACACGCTCAACACGAAAAATCGAGTCATTAGACttttaa
atgaaacaaaatcacaaaaagtcGTCCTTCTTTTTGGGGAACCAGAAAAG
CAAGCTCAATTGGTAAATTACGCGTCAACGTCTGGCCTGGACGGCGTTAC
GTGGATATTACGTGACGTGGACTCGAAACAAATCAAAATCAGACCTCCCG
ACAATTCTTACGTCTACACGTTTCTTTACGTAGATTATCTGCTACCAACA
ACAGAAGCCGTCGAAAAAGCGACGACGGTTTTAAACCCGTCTATCACTTT
ATCCAACCCCTCAACAGATATGTTTACTGATCTACAAACAAGACACATAA
TGTTGAAAAGTTATCAGACAACAACCCGTTTGTTAGCAAACTATCACCGC
GTCACCATTCTATGGCCAGCCGGCCGTCCGAAAGGTTGGTTGACGTTCAA
ACAGCTCTATGAGGAAGAGATGACGTCACAACAAAGTTACGGAAGGTTGT
TCAGAGTGCAGTGGGAAGACAAATATAAGGTAATGAAAAAGAGAGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057431-exon-scaffold_288-1491911889:437075..438591 | TCONS_00057431-exon-scaffold_288-1491911889:437075..438591 | Clytia hemisphaerica | exon |
| TCONS_00057431-exon-scaffold_288-1510915933:437075..438591 | TCONS_00057431-exon-scaffold_288-1510915933:437075..438591 | Clytia hemisphaerica | exon |
| TCONS_00057431-exon-scaffold_288-1575043694:437075..438591 | TCONS_00057431-exon-scaffold_288-1575043694:437075..438591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:437075..438591 . |
Blast
The following BLAST results are available for this feature:
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