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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057426 ID=TCONS_00057426|Name=TCONS_00057426|organism=Clytia hemisphaerica|type=transcript|length=1403bp
ggaaaacatatttttataaaaattggtgAATAATTTTCCAAAAGGAGAAT
TTCTAAGGTAGAATTAGTTGGAGCCATTTTTAAATGTAATCAATACAATT
GGATAGACCTTTCTccaataaagatatttgaaTGGAAAAGGAACTTGAGT
AACTTCAGACCTCGAAATTGTACTTTTACCATTAAACTCCTCAAAGAAAA
AAGACGAGATATTCAGAGATTTACATATTTGAAACTATCTGGTGATTTGA
TGTTTTAAATGGCTGTTTGGATTTTTACCCTTCATTTAAATTTCGCATGG
AAATATTTTTAATCCCTGGAACCTTTCAACGTCACTTAAGTTATCGTGAG
TTGTGGCCACCCAGTGGTGCTTATAAAATCAAAGTTATTGAAGTTTGGCG
TGATAAGAATAAAGATCCATTAGGATTTTCAGTACAAGTCGGCGATGGTT
GGGGACGATCGGACGGTATCTTCGTTTCCAGGATTCTGTTAGGGAGTGTT
TTTGACATTGGAATCATAAGCATCGGGGAGGAGATCATAAAAATCGNGGC
GATGGTTGGGGACGATCGGACGGTATCTTCGTTTCCAGGATTTTGTTAGG
GAGTGTTTTTGACATTGGAATCATAAGCATCGGTGAGGAGATCATAAAAA
TCGACGATCAAGATGTTAAAAAGATGAATATTTCTCAAGTAGTGCGTTAC
TTGTTCGATAACCAACATTTTAAAATCCATATAAAAGTTCCGACGCCCTT
TGCCAAAAAACGGATCGGCGGACCAGTGAAATACCGCGCGAACGAGCGAG
CGATCGGAGAGAAACCGTTGGTGGATTACAAGATTACGAACATGAGGATT
GGGCAACCAAGAAATGGACGCCATGTTTATCAGGAACCAATTATTGAAGA
GAATGAAGAAGTGGACGAAGAAGTATGACGATTTTTGACATCACGTGACC
GGAAGACTACTTTCCAGAAATTATCAAATCTTCAATGAAGAAATATGCTT
TGAATCATTTTCaactataaaaaaaatatgaagaaacCATCTAAAGCTCA
TTTGGTTTAGTTGTGCACTTCTTTATTGATTCACGTGGAAACCAGGTCCG
CGTTATAAGACTAattcccttgagagtggtttctacATGGTCGAGAAGAT
GAGTGCACACTTTTATTGTATGGACTTTAACAGTGATTCTATgcaaaccc
ggggggggggtcactcatatgatctggcttacgtcatgtgccgcgcttaa
gggtggggtttttctgCATCCCAAAATGTACTgcaagggtgtgtttctgt
gaggttgcactgcaagggtcgaattttaaaacaaattcaaaataattgtt
aaaaagaaaggtttttacttctcggttgtttgaaaaagtttctattgtct
gat Run BLAST on NCBI protein sequence of TCONS_00057426-protein >TCONS_00057426-protein ID=TCONS_00057426-protein|Name=TCONS_00057426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MEIFLIPGTFQRHLSYRELWPPSGAYKIKVIEVWRDKNKDPLGFSVQVGD
GWGRSDGIFVSRILLGSVFDIGIISIGEEIIKIXAMVGDDRTVSSFPGFC Run BLAST on NCBI transcript from alignment at scaffold_288:280225..281627 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057426 ID=TCONS_00057426|Name=TCONS_00057426|organism=Clytia hemisphaerica|type=transcript|length=1403bp|location=Sequence derived from alignment at scaffold_288:280225..281627 (Clytia hemisphaerica)
atcagacaatagaaactttttcaaacaaccgagaagtaaaaacctttctt
tttaacaattattttgaatttgttttaaaattcgacccttgcagtgcaac
ctcacagaaacacacccttgcAGTACATTTTGGGATGcagaaaaacccca
cccttaagcgcggcacatgacgtaagccagatcatatgagtgaccccccc
cccgggtttgcATAGAATCACTGTTAAAGTCCATACAATAAAAGTGTGCA
CTCATCTTCTCGACCATgtagaaaccactctcaagggaatTAGTCTTATA
ACGCGGACCTGGTTTCCACGTGAATCAATAAAGAAGTGCACAACTAAACC
AAATGAGCTTTAGATGgtttcttcatattttttttatagttGAAAATGAT
TCAAAGCATATTTCTTCATTGAAGATTTGATAATTTCTGGAAAGTAGTCT
TCCGGTCACGTGATGTCAAAAATCGTCATACTTCTTCGTCCACTTCTTCA
TTCTCTTCAATAATTGGTTCCTGATAAACATGGCGTCCATTTCTTGGTTG
CCCAATCCTCATGTTCGTAATCTTGTAATCCACCAACGGTTTCTCTCCGA
TCGCTCGCTCGTTCGCGCGGTATTTCACTGGTCCGCCGATCCGTTTTTTG
GCAAAGGGCGTCGGAACTTTTATATGGATTTTAAAATGTTGGTTATCGAA
CAAGTAACGCACTACTTGAGAAATATTCATCTTTTTAACATCTTGATCGT
CGATTTTTATGATCTCCTCACCGATGCTTATGATTCCAATGTCAAAAACA
CTCCCTAACAAAATCCTGGAAACGAAGATACCGTCCGATCGTCCCCAACC
ATCGCCNCGATTTTTATGATCTCCTCCCCGATGCTTATGATTCCAATGTC
AAAAACACTCCCTAACAGAATCCTGGAAACGAAGATACCGTCCGATCGTC
CCCAACCATCGCCGACTTGTACTGAAAATCCTAATGGATCTTTATTCTTA
TCACGCCAAACTTCAATAACTTTGATTTTATAAGCACCACTGGGTGGCCA
CAACTCACGATAACTTAAGTGACGTTGAAAGGTTCCAGGGATTAAAAATA
TTTCCATGCGAAATTTAAATGAAGGGTAAAAATCCAAACAGCCATTTAAA
ACATCAAATCACCAGATAGTTTCAAATATGTAAATCTCTGAATATCTCGT
CTTTTTTCTTTGAGGAGTTTAATGGTAAAAGTACAATTTCGAGGTCTGAA
GTTACTCAAGTTCCTTTTCCAttcaaatatctttattggAGAAAGGTCTA
TCCAATTGTATTGATTACATTTAAAAATGGCTCCAACTAATTCTACCTTA
GAAATTCTCCTTTTGGAAAATTATTcaccaatttttataaaaatatgttt
tcc Coding sequence (CDS) from alignment at scaffold_288:280225..281627 >TCONS_00057426 ID=TCONS_00057426|Name=TCONS_00057426|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_288:280225..281627 (Clytia hemisphaerica)
CTAACAAAATCCTGGAAACGAAGATACCGTCCGATCGTCCCCAACCATCG
CCNCGATTTTTATGATCTCCTCCCCGATGCTTATGATTCCAATGTCAAAA
ACACTCCCTAACAGAATCCTGGAAACGAAGATACCGTCCGATCGTCCCCA
ACCATCGCCGACTTGTACTGAAAATCCTAATGGATCTTTATTCTTATCAC
GCCAAACTTCAATAACTTTGATTTTATAAGCACCACTGGGTGGCCACAAC
TCACGATAACTTAAGTGACGTTGAAAGGTTCCAGGGATTAAAAATATTTC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057426-exon-scaffold_288-1491911889:280225..281627 | TCONS_00057426-exon-scaffold_288-1491911889:280225..281627 | Clytia hemisphaerica | exon |
| TCONS_00057426-exon-scaffold_288-1510915933:280225..281627 | TCONS_00057426-exon-scaffold_288-1510915933:280225..281627 | Clytia hemisphaerica | exon |
| TCONS_00057426-exon-scaffold_288-1575043694:280225..281627 | TCONS_00057426-exon-scaffold_288-1575043694:280225..281627 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:280225..281627 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001478 | PDZ |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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