TCONS_00057377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057377
Unique NameTCONS_00057377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057377 ID=TCONS_00057377|Name=TCONS_00057377|organism=Clytia hemisphaerica|type=transcript|length=785bp
atttttcttcatgttcattcattcttaaattttctaGACAActaacaaag
aaaataaaaagtagaATCAAAGACATGCAGATAAAATGGAGAATGCAACA
TCTTTAAACAATTCTGCTGCTACTGGTGGTGCTGGTGGTCTTGGTGGGTT
GAACAACACTTCTGCGACAGTGTCTTTACAACACCCTACACAACAAAACA
TGGTCATGCAACCTATGCAACAACTGCAGATGGGGCAAGCACCTCAGCAG
CAGCCTTCGACAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGCA
AATGCCGGATGATGAAAACNCAAGCAACCCTGTAATGAACGGCCAACCAC
CACCGCCGCAAATGCTGGATGATGAAAACACTGAGATGAGGAAACAAGAA
ATTGGTGATATTTTACACCAAATCATGAATATCACGGACCAATCACTGGA
CGAAGCTCAAGCCAGGAAACAAGCTTTGAATTGCCACCGCTTGAAGCCTG
CATTGTTCACAGTGTTGTGTGAAATTAAAGAAAAGACAGTTTTAAACATG
CGCAGCCAAGTGGAAGATGAGCCACCAGATCCACAATTAATGCGATTGGA
TAACATGTTACTTGCCGAAGGCGTCGCAGGAAGTGATAAGAGCGGAAGTA
CGGCCGCTGCGGCTGCAGCTGTTCACGATTCGCAAATCGAGAATGTGGAT
TACAAAATGAAGCTCTCGCaaatccgacaaatttaccACACCGAGCTCGA
GAAATATGAACAGGCTTGTTCCGAATTCACTACTC
Run BLAST on NCBI

transcript from alignment at scaffold_288:485594..489671-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057377 ID=TCONS_00057377|Name=TCONS_00057377|organism=Clytia hemisphaerica|type=transcript|length=4078bp|location=Sequence derived from alignment at scaffold_288:485594..489671- (Clytia hemisphaerica)
ATTTTTCTTCATGTTCATTCATTCTTAAATTTTCTAGACAACTAACAAAG
AAAATAAAAAGTAGAATCAAAGACATGCAGATAAAATGGAGAATGCAACA
TCTTTAAACAATTCTGCTGCTACTGGTGGTGCTGGTGGTCTTGGTGGGTT
GAACAACACTTCTGCGACAGTGTCTTTACAACACCCTACACAACAAAACA
TGGTCATGCAACCTATGCAACAACTGGTACGACATATTTTTCTTCCTCTT
TGCTCGTTTGACAGACCATTTCATAAATTATTTTAACTGCAACGACTGAC
TCTTTTTGAAACCATCGATCACCAAGGTAATTAAATCGTTTGAGCCTTCA
AGTGCTACTTTTCTCAACTTCAGTTGAGCTACAATCTGACAATGTCTGTC
TGTCACAAAAACTTTAGGGCAGCTTGGATTTGGCTGAAATCTGGCACACT
TGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTTGAAAATTT
TGATTTTTGGGGCCTGGGGACGAGTTTTTCTCCAAAACGAGGCTAAAACT
TTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTTG
CACACTTGTTCCTTGGGTGATTATCTGAGGACGTATTTCTTTTATTTTTC
AAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCTCCAAAACGAAA
CTAAAGCTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTG
AAATTTTCAAACCATCCGTTTAATGATATTCTATTTTCAATGATAAAGAA
AGGAGGCGCGTCTGCTGACTAAGTAAAAAAAGCAATAAGAATTCCTCCAT
AGGTGTGCTAGCGCACTGCGGAAGAGAGAAAGAGTTGTTTTTTCTTTCGT
TCAAAAATGCAATGTCAGCAAATGGTAGGAGATATGTTAAATAATGTCAT
TTTATGGCTCCATTAAAAATCACAATATTCACTAAGGAAACTTTTGAATT
GCTTGTTCTTTCATTAGCAGATGGGGCAAGCACCTCAGCAGCAGCCTTCG
ACAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGCAAATGCCGGA
TGATGAAAACNCAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGC
AAATGCTGGATGATGAAAACACTGAGATGAGGAAACAAGAAATTGGTGAT
ATTTTACACCAAATCATGAATATCACGGACCAATCACTGGACGAAGCTCA
AGCCAGGTAAGAGGGGGACATTGAATTTATACATTAAGGGTTCTTGTTGT
TACTTTTTAGTTGGATTTTGCAAGGGTTGTAAATTTTTTTGGAATTATAT
TCAAGCTTTGATATACCTACCGAAATAGAACTGGTTCCAGTATCATTCTC
GCTTAGAAATGAATTTCAGATGCCTCTCTTTAATTCGATCTTCAAGGCAC
TAAGAAATTTCTTTGAATAAGATAAAATTTAAATTATATGTAGAGTATTT
TGACCTACTTCCCAGCTGAGGGGACCAATGTTTTAGTTCGAATTATAGAA
GTTCGAATTAGAAAGAGTTGACTGTAACCATTTAAACAAAATTAAAGAAA
TGCTATCGAAATCCAATTTGGCTGTAAAAGACCAAAGACGACCTTTATTA
CCAGTACTATTTTTTGTATTTTTGGTTTTGCAGGAAACAAGCTTTGAATT
GCCACCGCTTGAAGCCTGCATTGTTCACAGTGTTGTGTGAAATTAAAGAA
AAGACAGGTAAGATGTTAGCCTGGGCTCATTTATAATCCATGTAATACAC
CTTTTCGACCGTAGTCGTGTGGTCTGGCGCGTGCCACTTGATTATTTAAT
TATCCCACTAAACTCGATCCAATGCTTTTTAGGATAAAGCGGACAAAAAA
ATGCCCGCGCGGCAATTGCCGGCTACGGTCGAAAAGGTGTATACAGTAGC
ATGGGTATTATATGATAACACGATGATTGTTTGTGTAAACTACAATTTGT
CTATTCCATTATTTTATGCTTATTTTCTACCATGTCTGAATTAGTCTGAA
TTAGCATACTTGACTAGCAAGAGGCTATTATAGTTTTTTTCCTCATGAGG
GAATGGTTCGGTTTCCGTTAAAGGACTTTGTTCAAAAGATCATATTATTG
TGCTCAGAAAAAATTATTTATAGAAGGGCAAGGTTTTCTCATGTTACTGG
TTTAAAGTGCCAATTCGAAAAATGATCAACAACTCTTGATATGATATTTG
TGTAGAAAGGTGCGAGCCGAATTTCGCATATTTTGTCTTAAATCACCAAA
TCTTCCAAGTCTACCAATCACTAAATTAAGCCCACGCCTAAGTCAATCTA
TTTTTTAGGGTAGCCTTTACAATCTTTGTCCGTTTCTCATTTAGTTTTAA
ACATGCGCAGCCAAGTGGAAGATGAGCCACCAGATCCACAATTAATGCGA
TTGGATAACATGTTACTTGCCGAAGGCGTCGCAGGAAGTGATAAGAGCGG
AAGTACGGCCGCTGCGGCTGCAGCTGTTCACGATTCGCAAATCGAGAATG
TGGATTACAAAATGAAGCTCTCGCAAATCCGACAAATTTACCACACCGAG
CTCGAGAAATATGAACAGGTACTTATAGGTTGAAGTCACTGATCTTTATT
GGACCTACCTCCGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTC
CGTTCGTCTGTTCTTTCGTCTGTTCGTCTGTCCGTCCGTCTGTTACCAGC
TTTTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGGGCCTGAATGGTTTAAGTGATTTTCG
TATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCT
TTATTTTTCCATTCTGAATTTTGGTACAATTATTGTCATTTTTTTCTTAT
TTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTT
AACCCTGAACTAAGCTTTTTCCAACATCTATGATCTGAGTTCTTAGAAAT
GGTGCCTACTAGTTGCAATACTCAATTTGGGTCAGTTTAGATTTAAAGAA
ATTTTCCGTTTTGTTTTCACTCGCACTTTCGAAAAACTCCAGTAAAAGAT
TTTGTTTGCTGGGATCGAGAAACTGTGTCAAGAGTATATAGAAGTCAGTG
GTTGAGGTCGATTCTCATCCATAAACATCAACTATGTGGATACAGGCAGC
GTTTTTCTTTTTGAAAAATTCAGGAACTCTGTCTAGTCGTCCATATTCGC
ACTCACGTTTAATGATTTCCGACTATGTAAATAATGTGTCTAAGCTTGTC
TATCAACGACCCCCGTTTCCTTTTGATATTGGTCATTCGTGCAAAAGAAG
TAATACATGTACTTATTTATTTGAGCATAATTCAAAACGTTCCGAAACAA
TGTTCCTTTGAGATACCTTAATCATTCTTATATTGCTCGGGAAATTCTTT
CTTACAATCCAGTCATAAATATGAAGCCTGATAAAAGAACTGCCTTGTCA
AGAATTCGGTATACAGCCCGTGGAACTCATGAAACTTTTATAATATTATC
ACTTAGGCTTGTTCCGAATTCACTACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036148XLOC_036148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057377-exon-scaffold_288-1575043694:489446..489671TCONS_00057377-exon-scaffold_288-1575043694:489446..489671Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1575043694:488416..488654TCONS_00057377-exon-scaffold_288-1575043694:488416..488654Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1575043694:487915..487988TCONS_00057377-exon-scaffold_288-1575043694:487915..487988Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1575043694:487054..487277TCONS_00057377-exon-scaffold_288-1575043694:487054..487277Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1575043694:485594..485615TCONS_00057377-exon-scaffold_288-1575043694:485594..485615Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1510915933:489446..489671TCONS_00057377-exon-scaffold_288-1510915933:489446..489671Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1510915933:488416..488654TCONS_00057377-exon-scaffold_288-1510915933:488416..488654Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1510915933:487915..487988TCONS_00057377-exon-scaffold_288-1510915933:487915..487988Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1510915933:487054..487277TCONS_00057377-exon-scaffold_288-1510915933:487054..487277Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1510915933:485594..485615TCONS_00057377-exon-scaffold_288-1510915933:485594..485615Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1491911889:489446..489671TCONS_00057377-exon-scaffold_288-1491911889:489446..489671Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1491911889:488416..488654TCONS_00057377-exon-scaffold_288-1491911889:488416..488654Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1491911889:487915..487988TCONS_00057377-exon-scaffold_288-1491911889:487915..487988Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1491911889:487054..487277TCONS_00057377-exon-scaffold_288-1491911889:487054..487277Clytia hemisphaericaexon
TCONS_00057377-exon-scaffold_288-1491911889:485594..485615TCONS_00057377-exon-scaffold_288-1491911889:485594..485615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:485594..489671 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.67472	7.06865	4.96307	8.18754	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00014193	0	0	0	0	0	0	0.055543	0
Blast
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BLAST of TCONS_00057377 vs. Swiss-Prot (Human)
Match: PBX3 (Pre-B-cell leukemia transcription factor 3 OS=Homo sapiens GN=PBX3 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.082e-62
Identity = 102/152 (67.11%), Postives = 123/152 (80.92%), Query Frame = 2 
Query:  347 PPPPQMLDDENTEMRKQEIGDILHQIMNITDQSLDEAQARKQALNCHRLKPALFTVLCEIKEKTVLNMRSQVEDEPPDPQLMRLDNMLLAEGVAGSDK------SGSTXXXXXXVHDSQIENVDYKMKLSQIRQIYHTELEKYEQACSEFTT 784
            PPPP   +  + + RKQ+IGDILHQIM ITDQSLDEAQA+K ALNCHR+KPALF+VLCEIKEKT L++R   E++PPDPQLMRLDNMLLAEGV+G +K      + + AAA+    D+ IE+ DY+ KL+QIRQIYHTELEKYEQAC+EFTT
Sbjct:   28 PPPPHGHEGADGDGRKQDIGDILHQIMTITDQSLDEAQAKKHALNCHRMKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASGGSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTT 179
The following BLAST results are available for this feature:
BLAST of TCONS_00057377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PBX32.082e-6267.11Pre-B-cell leukemia transcription factor 3 OS=Homo... [more]
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